Clone BS07877 Report

Search the DGRC for BS07877

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG8654-RA
Protein status:BS07877.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07877.3prime Sequence

942 bp (804 high quality bases) assembled on 2006-01-06

> BS07877.3prime
ATGGTCTAGAAAGCTTCTATGCCTGGTCCTTCTTTTTACGCCCGAATGTC
TCTCCGTCCTCCAGGGTTTCCGGCAGTGGAGTTCCACGTGTCTCCGGCAA
GAAAATTGTGCCGAGCATTGCCAGAATGGAGAAAATTCCAAAGATCAGGG
GCGCCACCCACAGACCGTATGCAGCCAGATCGACGATGAGCGGAGCAACA
ATGGAACCTATTCGACCGACCATCGAGCAGAGACCAACCCCACTGGAACG
CACAACCGTGGGAAAGAGCTCTCCGCCGTACAAGTAGACATTCGGAAAGG
TGATTGATGCGCCAAAAAGTCCAATTGTGGCGCAGGTCACACGCACAGCC
TCTGCCTGAGTAGAAAGGCATGCCAATAGGATTAAGCCCAAAGCACTGCA
TCCATTGGAAAGAAGCAGGGTCTTCTTGCGTCCGAGGTACTTGGTCATGA
GCGCACAGAGGCATGTGCCTGGAATGCCCACTCCGGCGGCGATTGCATTG
CTGATGAAGATGTTGCCGCCCAGCGCGGAGACATACTGAGCGGTGCCGTA
GTAGACCATGCAAACCACTAGCCAATTGTTTGCCATGAATATGGTCTTTA
TCCGCATATAGGGTGTCCGGAATAGATCCACGACGGTGCCTTTTTTGACC
GGCTGGCGGGCTGCCAGTGCCCCATAGGCAGCTTCGATCTCCGGCCGAAT
CGTTTCCGTCGGAGCCTTATTACACTTGGCGATCTTCTCCAGAATCTTTA
TGGACTTGTCCAGCTTGCCGGTGGTAAAGAGCCAGCGTGGCGACTCGGGA
ACCAGCCAAATGTAGATCACGAACACGATAGAGAAAATGGTGATGCTGAA
CTGGAACCAGCGCCATTCTCGAATAAAGTANGCAAACAGGGGCAGGGAGG
CGTGGCCGATGTTAAAGGGGATTTGGTAGAGAATGGCTACCA

BS07877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-PA 1509 CG8654-RA 584..1509 942..17 4586 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 2938 CG8654-RD 1344..2269 942..17 4604 99.8 Minus
CG8654-RC 2402 CG8654-RC 663..1588 942..17 4604 99.8 Minus
CG8654-RB 2284 CG8654-RB 690..1615 942..17 4604 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19983156..19984081 942..17 4604 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 19:03:29 has no hits.

BS07877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:35 Download gff for BS07877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 585..1509 17..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:38 Download gff for BS07877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 585..1509 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:11:13 Download gff for BS07877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 691..1621 10..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:31 Download gff for BS07877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 691..1621 10..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:31 Download gff for BS07877.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19983157..19984087 10..941 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:11:13 Download gff for BS07877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15870662..15871592 10..941 99   Minus

BS07877.5prime Sequence

909 bp (818 high quality bases) assembled on 2006-01-06

> BS07877.5prime
GAAGTTATCAGTCGACATGGCCGATCGACCGCAGGATCCAAAGGCTCCAA
AGCCACTGAAACCCGTCACCAAGACAGGTGATCCGATAATTTCGCAGATC
GGCGACTTCCGGCGCTACCAGTTATTCTTTTTCTTCATCGTTCTACTGTG
CAAATTTGGCACGGGATGGCACACCCTCGGCCACATATTCCTCGCAGCAC
CAACGCCGTTATCCTGCAAGACAGAGAACGTCACGGATCCCTGCAGTGAC
GAATGCTCCGAGACCGAGTTCGACACTAGCGTCTTCCAATCCACCATCAT
AACCGAGTGGAATCTCACCTGCGAAAGCAAACAGCTGGCTAGCTTGTCCC
AAAGTATCGTCATGCTGGGCATTTTGTTCGGGAGTATTCTGTTTGGCATG
TTCGCTGATCGGTATGGACGACGCCCTGCCTTCCTGACGTGCTGCTTCAT
GCAGCTGATCACTGGCCTCATCGTCTGCGTATCCCCCTACTACTGGTTCT
ATTGCCTCTTTAGGTTCCTGGTGGCTGTGGCCACGGCGGGAACGATGACC
ACCAGTTTCGTCTTGCTGATGGAAATCGTGGGACCCAAAAAGCGCGAAAT
GGTAGCCATTCTCTACCAAATCCCCTTTAACATCGGCCACGCCTCCCTGG
CCCTGTTTGCCTACTTTATTCGAGAATGGCGCTGGTTCCAGTTCAGCATC
ACCATTTTCTCTATCGTGTTCGTGATCTACATTTGGCTGGTTCCCGAGTC
GCCACGCTGGCTCTTTACCACCGGCAAGCTGGACAAGTCCATAAAGATTC
TGGAGAAGATCGCCAAGTGTAATAAGGCTCCGACGGAAACGATTCGGCCG
GAGATCGAAGCTGCCTATGGGGCACTGGCAGCCCGCCAGCCGGTCAAAAA
GGCACCGTC

BS07877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-PA 1509 CG8654-RA 1..884 17..900 4420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 2938 CG8654-RD 748..1654 3..909 4460 99.6 Plus
CG8654-RC 2402 CG8654-RC 67..973 3..909 4460 99.6 Plus
CG8654-RA 2395 CG8654-RA 205..1111 3..909 4460 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19982307..19982705 15..413 1995 100 Plus
2R 25286936 2R 19983109..19983456 553..900 1740 100 Plus
2R 25286936 2R 19982905..19983049 411..555 725 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:19:22 has no hits.

BS07877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:36 Download gff for BS07877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:39 Download gff for BS07877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:47 Download gff for BS07877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 203..1111 1..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:29:04 Download gff for BS07877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 203..1111 1..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:29:04 Download gff for BS07877.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19982294..19982703 1..411 98 -> Plus
2R 19982906..19983049 412..555 100 -> Plus
2R 19983112..19983466 556..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:47 Download gff for BS07877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15869799..15870208 1..411 98 -> Plus
arm_2R 15870411..15870554 412..555 100 -> Plus
arm_2R 15870617..15870971 556..909 99   Plus

BS07877.complete Sequence

1541 bp (1541 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636018

> BS07877.complete
GAAGTTATCAGTCGACATGGCCGATCGACCGCAGGATCCAAAGGCTCCAA
AGCCACTGAAACCCGTCACCAAGACAGGTGATCCGATAATTTCGCAGATC
GGCGACTTCCGGCGCTACCAGTTATTCTTTTTCTTCATCGTTCTACTGTG
CAAATTTGGCACGGGATGGCACACCCTCGGCCACATATTCCTCGCAGCAC
CAACGCCGTTATCCTGCAAGACAGAGAACGTCACGGATCCCTGCAGTGAC
GAATGCTCCGAGACCGAGTTCGACACTAGCGTCTTCCAATCCACCATCAT
AACCGAGTGGAATCTCACCTGCGAAAGCAAACAGCTGGCTAGCTTGTCCC
AAAGTATCGTCATGCTGGGCATTTTGTTCGGGAGTATTCTGTTTGGCATG
TTCGCTGATCGGTATGGACGACGCCCTGCCTTCCTGACGTGCTGCTTCAT
GCAGCTGATCACTGGCCTCATCGTCTGCGTATCCCCCTACTACTGGTTCT
ATTGCCTCTTTAGGTTCCTGGTGGCTGTGGCCACGGCGGGAACGATGACC
ACCAGTTTCGTCTTGCTGATGGAAATCGTGGGACCCAAAAAGCGCGAAAT
GGTAGCCATTCTCTACCAAATCCCCTTTAACATCGGCCACGCCTCCCTGG
CCCTGTTTGCCTACTTTATTCGAGAATGGCGCTGGTTCCAGTTCAGCATC
ACCATTTTCTCTATCGTGTTCGTGATCTACATTTGGCTGGTTCCCGAGTC
GCCACGCTGGCTCTTTACCACCGGCAAGCTGGACAAGTCCATAAAGATTC
TGGAGAAGATCGCCAAGTGTAATAAGGCTCCGACGGAAACGATTCGGCCG
GAGATCGAAGCTGCCTATGGGGCACTGGCAGCCCGCCAGCCGGTCAAAAA
AGGCACCGTCGTGGATCTATTCCGGACACCCTATATGCGGATAAAGACCA
TATTCATGGCAAACAATTGGCTAGTGGTTTGCATGGTCTACTACGGCACC
GCTCAGTATGTCTCCGCGCTGGGCGGCAACATCTTCATCAGCAATGCAAT
CGCCGCCGGAGTGGGCATTCCAGGCACATGCCTCTGTGCGCTCATGACCA
AGTACCTCGGACGCAAGAAGACCCTGCTTCTTTCCAATGGATGCAGTGCT
TTGGGCTTAATCCTATTGGCATGCCTTTCTACTCAGGCAGAGGCTGTGCG
TGTGACCTGCGCCACAATTGGACTTTTTGGCGCATCAATCACCTTTCCGA
ATGTCTACTTGTACGGCGGAGAGCTCTTTCCCACGGTTGTGCGTTCCAGT
GGGGTTGGTCTCTGCTCGATGGTCGGTCGAATAGGTTCCATTGTTGCTCC
GCTCATCGTCGATCTGGCTGCATACGGTCTGTGGGTGGCGCCCCTGATCT
TTGGAATTTTCTCCATTCTGGCAATGCTCGGCACAATTTTCTTGCCGGAG
ACACGTGGAACTCCACTGCCGGAAACCCTGGAGGACGGAGAGACATTCGG
GCGTAAAAAGAAGGACCAGGCATAGAAGCTTTCTAGACCAT

BS07877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 1509 CG8654-PD 1..1509 17..1525 7545 100 Plus
CG8654-RC 1509 CG8654-PC 1..1509 17..1525 7545 100 Plus
CG8654-RB 1509 CG8654-PB 1..1509 17..1525 7545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 2938 CG8654-RD 759..2269 15..1525 7555 100 Plus
CG8654-RC 2402 CG8654-RC 78..1588 15..1525 7555 100 Plus
CG8654-RB 2284 CG8654-RB 105..1615 15..1525 7555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19983109..19984081 553..1525 4865 100 Plus
2R 25286936 2R 19982307..19982705 15..413 1995 100 Plus
2R 25286936 2R 19982905..19983049 411..555 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:38:47 has no hits.

BS07877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:38 Download gff for BS07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 1..1509 17..1525 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:15 Download gff for BS07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 204..1733 1..1532 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:33 Download gff for BS07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 107..1615 17..1525 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:38 Download gff for BS07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 204..1733 1..1532 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:37 Download gff for BS07877.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 107..1615 17..1525 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:37 Download gff for BS07877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19982309..19982703 17..411 100 -> Plus
2R 19982906..19983049 412..555 100 -> Plus
2R 19983112..19984081 556..1525 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:33 Download gff for BS07877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15869814..15870208 17..411 100 -> Plus
arm_2R 15870411..15870554 412..555 100 -> Plus
arm_2R 15870617..15871586 556..1525 100   Plus

BS07877.pep Sequence

Translation from 16 to 1524

> BS07877.pep
MADRPQDPKAPKPLKPVTKTGDPIISQIGDFRRYQLFFFFIVLLCKFGTG
WHTLGHIFLAAPTPLSCKTENVTDPCSDECSETEFDTSVFQSTIITEWNL
TCESKQLASLSQSIVMLGILFGSILFGMFADRYGRRPAFLTCCFMQLITG
LIVCVSPYYWFYCLFRFLVAVATAGTMTTSFVLLMEIVGPKKREMVAILY
QIPFNIGHASLALFAYFIREWRWFQFSITIFSIVFVIYIWLVPESPRWLF
TTGKLDKSIKILEKIAKCNKAPTETIRPEIEAAYGALAARQPVKKGTVVD
LFRTPYMRIKTIFMANNWLVVCMVYYGTAQYVSALGGNIFISNAIAAGVG
IPGTCLCALMTKYLGRKKTLLLSNGCSALGLILLACLSTQAEAVRVTCAT
IGLFGASITFPNVYLYGGELFPTVVRSSGVGLCSMVGRIGSIVAPLIVDL
AAYGLWVAPLIFGIFSILAMLGTIFLPETRGTPLPETLEDGETFGRKKKD
QA*

BS07877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-PD 502 CG8654-PD 1..502 1..502 2627 100 Plus
CG8654-PC 502 CG8654-PC 1..502 1..502 2627 100 Plus
CG8654-PB 502 CG8654-PB 1..502 1..502 2627 100 Plus
CG8654-PA 502 CG8654-PA 1..502 1..502 2627 100 Plus
Orct-PB 548 CG6331-PB 4..528 22..501 765 32.8 Plus