Clone BS07880 Report

Search the DGRC for BS07880

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptSPE-RA
Protein status:BS07880.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07880.3prime Sequence

917 bp (809 high quality bases) assembled on 2006-01-06

> BS07880.3prime
ATGGTCTAGAAAGCTTTCATGGCTCCAATTTCTGCTTTATCCAATCGATG
AAAGCCCCCGTGCGGGTATAGACGCCGGGCCATCCCTTGAGGCCGCAGGG
CTTCGTCCCGTAGGAGGTGACGCCGGCAATGTAGAAGACATCCCGGCCGC
CCGTGGATATAGGCACCATAAGGGGACCGCCGGAATCGCCACCGCATGTA
TCCACGCCCAACTGGCCGCCGGCACACATCTGAGAATCGTCCAGTTTCAC
CTTGAAGCTGGAGTACTTTTCCTGACAACTCGTTAGGTTCCAAACGTTGA
CGGTGATCTTCAGCTTGATCGCACTTGGCTGCATGTTCTCGGTAAGTCCC
CAGCCGGCCACATCCATGCCGTAGTCCACAAAGTTGTTTTGGACTAAACC
ATCCGTGGGAAGGCATATTGGACGCACGTAGTCGGTGTAGCTAACAATCC
TCTTAAGGCGCACCAACGCAATGTCATTACGCTGATCAACGGAATTGGGA
GCATACATCTCGTGGATGATGCCCTTCTCGACCTCAATGTCGATGTGTTT
CGGTGCACAGATGCGCTGTCCGTTCATCTGGGTGGTGCAGTCAGGATCGG
TACGAGTGTCCCACTCCCCCAGGCGAACGCTGTGTAGAACGGCACCGGAT
TTGTCCAGTTCTCGGCTGGCCAGGCAGTGTCCAGCGGTCAGGACGTAGCG
CGAGTTGAGCAATGCACCGCCGCAGTTGAAAGTGTAGGTTTCAGAAAAAA
GTTTTTTGTACTGCAGCAATACCATCCATGGGAATTCCCAGAGGGTCGTA
TTGGTGCCCCCGAAAATGCGATCAGCGAAAAGGAAGCCGCAGACGTCATT
TCCAGCCAGCACATCCCCCTGCTGCAGTGCATCCCTCGTCGAAGGAGTTG
GTTCCGAGTCCATGATA

BS07880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG16705-PA 1203 CG16705-RA 303..1203 917..17 4480 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1267 CG16705-RA 334..1234 917..17 4490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23687689..23688114 442..17 2130 100 Minus
3R 32079331 3R 23687321..23687630 750..441 1550 100 Minus
3R 32079331 3R 23686938..23687104 917..751 820 99.4 Minus
3R 32079331 3R 23688829..23689014 204..19 495 84.4 Minus
Blast to na_te.dros performed on 2015-01-31 16:25:23 has no hits.

BS07880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:41 Download gff for BS07880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 304..1203 17..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:46 Download gff for BS07880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 304..1203 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:23:43 Download gff for BS07880.3prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 335..1234 17..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:11 Download gff for BS07880.3prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 335..1234 17..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:11 Download gff for BS07880.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23686939..23687104 751..916 99 -> Minus
3R 23687321..23687630 441..750 100 -> Minus
3R 23687691..23688114 17..440 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:23:43 Download gff for BS07880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19512661..19512826 751..916 99 -> Minus
arm_3R 19513043..19513352 441..750 100 -> Minus
arm_3R 19513413..19513836 17..440 100   Minus

BS07880.5prime Sequence

876 bp (812 high quality bases) assembled on 2006-01-06

> BS07880.5prime
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCCATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGT

BS07880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG16705-PA 1203 CG16705-RA 1..860 17..876 4275 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1267 CG16705-RA 28..891 13..876 4290 99.8 Plus
CG18754-RB 1687 CG18754-RB 1432..1511 13..92 385 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23686709..23687104 90..485 1980 100 Plus
3R 32079331 3R 23687321..23687630 486..795 1550 100 Plus
3R 32079331 3R 23687689..23687771 794..876 400 98.8 Plus
3R 32079331 3R 23686282..23686361 13..92 385 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 00:31:31 has no hits.

BS07880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:42 Download gff for BS07880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:47 Download gff for BS07880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:00:09 Download gff for BS07880.5prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 22..891 6..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:12 Download gff for BS07880.5prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 22..891 6..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:12 Download gff for BS07880.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23686276..23686361 6..92 95 -> Plus
3R 23686712..23687104 93..485 100 -> Plus
3R 23687321..23687630 486..795 100 -> Plus
3R 23687691..23687771 796..876 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:00:09 Download gff for BS07880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19511998..19512083 6..92 95 -> Plus
arm_3R 19512434..19512826 93..485 100 -> Plus
arm_3R 19513043..19513352 486..795 100 -> Plus
arm_3R 19513413..19513493 796..876 98   Plus

BS07880.complete Sequence

1235 bp (1235 high quality bases) assembled on 2006-01-10

> BS07880.complete
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCAATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGTGGCCGGCTGGGGACTTACCGAGAA
CATGCAGCCAAGTGCGATCAAGCTGAAGATCACCGTCAACGTTTGGAACC
TAACGAGTTGTCAGGAAAAGTACTCCAGCTTCAAGGTGAAACTGGACGAT
TCTCAGATGTGTGCCGGCGGCCAGTTGGGCGTGGATACATGCGGTGGCGA
TTCCGGCGGTCCCCTTATGGTGCCTATATCCACGGGCGGCCGGGATGTCT
TCTACATTGCCGGCGTCACCTCCTACGGGACGAAGCCCTGCGGCCTCAAG
GGATGGCCCGGCGTCTATACCCGCACGGGGGCTTTCATCGATTGGATAAA
GCAGAAATTGGAGCCATGAAAGCTTTCTAGACCAT

BS07880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1203 CG16705-PA 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1267 CG16705-RA 28..1234 13..1219 6020 99.9 Plus
CG18754-RB 1687 CG18754-RB 1432..1511 13..92 385 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23687689..23688114 794..1219 2130 100 Plus
3R 32079331 3R 23686709..23687104 90..485 1980 100 Plus
3R 32079331 3R 23687321..23687630 486..795 1550 100 Plus
3R 32079331 3R 23688829..23689014 1032..1217 495 84.4 Plus
3R 32079331 3R 23686282..23686361 13..92 385 98.8 Plus
Blast to na_te.dros performed on 2014-11-27 01:16:40 has no hits.

BS07880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:25 Download gff for BS07880.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 1..1203 17..1219 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:59 Download gff for BS07880.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 7..1219 6..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:56 Download gff for BS07880.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 32..1233 17..1218 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:26 Download gff for BS07880.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 7..1219 6..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:23 Download gff for BS07880.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 32..1233 17..1218 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:23 Download gff for BS07880.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23686286..23686361 17..92 100 -> Plus
3R 23686712..23687104 93..485 100 -> Plus
3R 23687321..23687630 486..795 100 -> Plus
3R 23687691..23688113 796..1218 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:56 Download gff for BS07880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19512008..19512083 17..92 100 -> Plus
arm_3R 19512434..19512826 93..485 100 -> Plus
arm_3R 19513043..19513352 486..795 100 -> Plus
arm_3R 19513413..19513835 796..1218 100   Plus

BS07880.pep Sequence

Translation from 16 to 1218

> BS07880.pep
MASTERNFLLLSLVVSALSGLVHRSDAAEISFGSCTPQQSDERGQCVHIT
SCPYLANLLMVEPKTPAQRILLSKSQCGLDNRVEGLVNRILVCCPQSMRG
NIMDSEPTPSTRDALQQGDVLPGNDVCGFLFADRIFGGTNTTLWEFPWMV
LLQYKKLFSETYTFNCGGALLNSRYVLTAGHCLASRELDKSGAVLHSVRL
GEWDTRTDPDCTTQMNGQRICAPKHIDIEVEKGIIHEMYAPNSVDQRNDI
ALVRLKRIVSYTDYVRPICLPTDGLVQNNFVDYGMDVAGWGLTENMQPSA
IKLKITVNVWNLTSCQEKYSSFKVKLDDSQMCAGGQLGVDTCGGDSGGPL
MVPISTGGRDVFYIAGVTSYGTKPCGLKGWPGVYTRTGAFIDWIKQKLEP
*

BS07880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-PA 400 CG16705-PA 1..400 1..400 2140 100 Plus
ea-PA 392 CG4920-PA 9..391 9..399 843 43.5 Plus
MP1-PA 390 CG1102-PA 19..388 25..398 770 43.5 Plus
MP1-PC 399 CG1102-PC 19..397 25..398 758 43.5 Plus
ea-PB 261 CG4920-PB 3..260 141..399 664 49.2 Plus