Clone Sequence Records
BS07880.3prime Sequence
917 bp (809 high quality bases) assembled on 2006-01-06
> BS07880.3prime
ATGGTCTAGAAAGCTTTCATGGCTCCAATTTCTGCTTTATCCAATCGATG
AAAGCCCCCGTGCGGGTATAGACGCCGGGCCATCCCTTGAGGCCGCAGGG
CTTCGTCCCGTAGGAGGTGACGCCGGCAATGTAGAAGACATCCCGGCCGC
CCGTGGATATAGGCACCATAAGGGGACCGCCGGAATCGCCACCGCATGTA
TCCACGCCCAACTGGCCGCCGGCACACATCTGAGAATCGTCCAGTTTCAC
CTTGAAGCTGGAGTACTTTTCCTGACAACTCGTTAGGTTCCAAACGTTGA
CGGTGATCTTCAGCTTGATCGCACTTGGCTGCATGTTCTCGGTAAGTCCC
CAGCCGGCCACATCCATGCCGTAGTCCACAAAGTTGTTTTGGACTAAACC
ATCCGTGGGAAGGCATATTGGACGCACGTAGTCGGTGTAGCTAACAATCC
TCTTAAGGCGCACCAACGCAATGTCATTACGCTGATCAACGGAATTGGGA
GCATACATCTCGTGGATGATGCCCTTCTCGACCTCAATGTCGATGTGTTT
CGGTGCACAGATGCGCTGTCCGTTCATCTGGGTGGTGCAGTCAGGATCGG
TACGAGTGTCCCACTCCCCCAGGCGAACGCTGTGTAGAACGGCACCGGAT
TTGTCCAGTTCTCGGCTGGCCAGGCAGTGTCCAGCGGTCAGGACGTAGCG
CGAGTTGAGCAATGCACCGCCGCAGTTGAAAGTGTAGGTTTCAGAAAAAA
GTTTTTTGTACTGCAGCAATACCATCCATGGGAATTCCCAGAGGGTCGTA
TTGGTGCCCCCGAAAATGCGATCAGCGAAAAGGAAGCCGCAGACGTCATT
TCCAGCCAGCACATCCCCCTGCTGCAGTGCATCCCTCGTCGAAGGAGTTG
GTTCCGAGTCCATGATA
BS07880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16705-PA | 1203 | CG16705-RA | 303..1203 | 917..17 | 4480 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1267 | CG16705-RA | 334..1234 | 917..17 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23687689..23688114 | 442..17 | 2130 | 100 | Minus |
3R | 32079331 | 3R | 23687321..23687630 | 750..441 | 1550 | 100 | Minus |
3R | 32079331 | 3R | 23686938..23687104 | 917..751 | 820 | 99.4 | Minus |
3R | 32079331 | 3R | 23688829..23689014 | 204..19 | 495 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:25:23 has no hits.
BS07880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:41 Download gff for
BS07880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 304..1203 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:46 Download gff for
BS07880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 304..1203 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:23:43 Download gff for
BS07880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 335..1234 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:11 Download gff for
BS07880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 335..1234 | 17..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:11 Download gff for
BS07880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23686939..23687104 | 751..916 | 99 | -> | Minus |
3R | 23687321..23687630 | 441..750 | 100 | -> | Minus |
3R | 23687691..23688114 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:23:43 Download gff for
BS07880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19512661..19512826 | 751..916 | 99 | -> | Minus |
arm_3R | 19513043..19513352 | 441..750 | 100 | -> | Minus |
arm_3R | 19513413..19513836 | 17..440 | 100 | | Minus |
BS07880.5prime Sequence
876 bp (812 high quality bases) assembled on 2006-01-06
> BS07880.5prime
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCCATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGT
BS07880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16705-PA | 1203 | CG16705-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1267 | CG16705-RA | 28..891 | 13..876 | 4290 | 99.8 | Plus |
CG18754-RB | 1687 | CG18754-RB | 1432..1511 | 13..92 | 385 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23686709..23687104 | 90..485 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 23687321..23687630 | 486..795 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 23687689..23687771 | 794..876 | 400 | 98.8 | Plus |
3R | 32079331 | 3R | 23686282..23686361 | 13..92 | 385 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:31:31 has no hits.
BS07880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:42 Download gff for
BS07880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:47 Download gff for
BS07880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:00:09 Download gff for
BS07880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 22..891 | 6..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:12 Download gff for
BS07880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 22..891 | 6..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:12 Download gff for
BS07880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23686276..23686361 | 6..92 | 95 | -> | Plus |
3R | 23686712..23687104 | 93..485 | 100 | -> | Plus |
3R | 23687321..23687630 | 486..795 | 100 | -> | Plus |
3R | 23687691..23687771 | 796..876 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:00:09 Download gff for
BS07880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19511998..19512083 | 6..92 | 95 | -> | Plus |
arm_3R | 19512434..19512826 | 93..485 | 100 | -> | Plus |
arm_3R | 19513043..19513352 | 486..795 | 100 | -> | Plus |
arm_3R | 19513413..19513493 | 796..876 | 98 | | Plus |
BS07880.complete Sequence
1235 bp (1235 high quality bases) assembled on 2006-01-10
> BS07880.complete
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCAATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGTGGCCGGCTGGGGACTTACCGAGAA
CATGCAGCCAAGTGCGATCAAGCTGAAGATCACCGTCAACGTTTGGAACC
TAACGAGTTGTCAGGAAAAGTACTCCAGCTTCAAGGTGAAACTGGACGAT
TCTCAGATGTGTGCCGGCGGCCAGTTGGGCGTGGATACATGCGGTGGCGA
TTCCGGCGGTCCCCTTATGGTGCCTATATCCACGGGCGGCCGGGATGTCT
TCTACATTGCCGGCGTCACCTCCTACGGGACGAAGCCCTGCGGCCTCAAG
GGATGGCCCGGCGTCTATACCCGCACGGGGGCTTTCATCGATTGGATAAA
GCAGAAATTGGAGCCATGAAAGCTTTCTAGACCAT
BS07880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1203 | CG16705-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1267 | CG16705-RA | 28..1234 | 13..1219 | 6020 | 99.9 | Plus |
CG18754-RB | 1687 | CG18754-RB | 1432..1511 | 13..92 | 385 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23687689..23688114 | 794..1219 | 2130 | 100 | Plus |
3R | 32079331 | 3R | 23686709..23687104 | 90..485 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 23687321..23687630 | 486..795 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 23688829..23689014 | 1032..1217 | 495 | 84.4 | Plus |
3R | 32079331 | 3R | 23686282..23686361 | 13..92 | 385 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:16:40 has no hits.
BS07880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:25 Download gff for
BS07880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 1..1203 | 17..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:59 Download gff for
BS07880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 7..1219 | 6..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:56 Download gff for
BS07880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 32..1233 | 17..1218 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:26 Download gff for
BS07880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 7..1219 | 6..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:23 Download gff for
BS07880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 32..1233 | 17..1218 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:23 Download gff for
BS07880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23686286..23686361 | 17..92 | 100 | -> | Plus |
3R | 23686712..23687104 | 93..485 | 100 | -> | Plus |
3R | 23687321..23687630 | 486..795 | 100 | -> | Plus |
3R | 23687691..23688113 | 796..1218 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:56 Download gff for
BS07880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19512008..19512083 | 17..92 | 100 | -> | Plus |
arm_3R | 19512434..19512826 | 93..485 | 100 | -> | Plus |
arm_3R | 19513043..19513352 | 486..795 | 100 | -> | Plus |
arm_3R | 19513413..19513835 | 796..1218 | 100 | | Plus |
BS07880.pep Sequence
Translation from 16 to 1218
> BS07880.pep
MASTERNFLLLSLVVSALSGLVHRSDAAEISFGSCTPQQSDERGQCVHIT
SCPYLANLLMVEPKTPAQRILLSKSQCGLDNRVEGLVNRILVCCPQSMRG
NIMDSEPTPSTRDALQQGDVLPGNDVCGFLFADRIFGGTNTTLWEFPWMV
LLQYKKLFSETYTFNCGGALLNSRYVLTAGHCLASRELDKSGAVLHSVRL
GEWDTRTDPDCTTQMNGQRICAPKHIDIEVEKGIIHEMYAPNSVDQRNDI
ALVRLKRIVSYTDYVRPICLPTDGLVQNNFVDYGMDVAGWGLTENMQPSA
IKLKITVNVWNLTSCQEKYSSFKVKLDDSQMCAGGQLGVDTCGGDSGGPL
MVPISTGGRDVFYIAGVTSYGTKPCGLKGWPGVYTRTGAFIDWIKQKLEP
*
BS07880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-PA | 400 | CG16705-PA | 1..400 | 1..400 | 2140 | 100 | Plus |
ea-PA | 392 | CG4920-PA | 9..391 | 9..399 | 843 | 43.5 | Plus |
MP1-PA | 390 | CG1102-PA | 19..388 | 25..398 | 770 | 43.5 | Plus |
MP1-PC | 399 | CG1102-PC | 19..397 | 25..398 | 758 | 43.5 | Plus |
ea-PB | 261 | CG4920-PB | 3..260 | 141..399 | 664 | 49.2 | Plus |