Clone Sequence Records
BS07881.3prime Sequence
951 bp (777 high quality bases) assembled on 2006-01-06
> BS07881.3prime
ATGGTCTAGAAAGCTTTTAATTGCTGACGCGCTTTGCATGCAGTTGCATA
CGTTTCTCGATCTCGGGCCGGAAGTGACGAATGAGGCCCTGGACTGGCCA
GGCGGCACCATCACCAAGCGCACAAATAGTGTGTCCCTCAATTTGTTTGG
AAATCTCCCACAGCATATCGATCTCAGCGGGCTGGGCGTCACCCTTAACA
AATCGAGTCATGATTTTGTTCATCCAACCGATTCCCTCTCGGCATGGCGT
GCACTGGCCACAGCTCTCATGCTTATAGAATGAAATTAGCCTGGCAATAG
CCTTTATCACATCCGTCGACTTGTCCATTACGATGATAGCCGCAGTACCC
AGCGAAGTCTGAGCGGCAATTAGGCCATCGAAGTCCATGATAACATCGTC
GCAGACATTTTTGGGTATGATGGGGGTGGAAGAGCCGCCGGGAATGACGC
CTAGCAGATTATCCCATCCACCAGTGACGCCTCCGCAGTGGCGCTCAATC
AACTCCTTGAGTGGGATGGACATTTCCTCCTCCACAGTGCAGGGCCTGTT
GACATGTCCCGAAATGTTGAAGAGCTTGGTGCCCGAGTTACGGGTGCGAC
CGAAGCTGGCGAACCATACACCGCCACGACGGCAAATGGTTGGTGCAACG
GCCACGGTCTCCACATTGGTAACTGTGGTTGGGCAACCGAACACACCCAC
ATCAGCTGGGAATGGCGGCTTCAAGCGTGGCTTTCCCTGCTTTCCTTCCA
GCGATTCGATCAGAGCGGTCTCCTCGCCGCAAATGTAAGCTCCAGCGCCG
CGGTGCATGAAGACGTCGAAGTCGTAGCCAGTTCCGCACGCATTCTTTCC
AATCAGACCAGCCTGGTATGCCTCGGCAATGGCCAGTTGCATGTTGGAAG
CCTCGTTGTAGAACTCGCCACGAATGTAGATGTAGGCAGCCTGGGCGCCC
A
BS07881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-PA | 1425 | CG9140-RA | 491..1425 | 951..17 | 4625 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1553 | CG9140-RB | 524..1458 | 951..17 | 4645 | 99.8 | Minus |
CG9140-RA | 1590 | CG9140-RA | 561..1495 | 951..17 | 4645 | 99.8 | Minus |
CG11423-RA | 2143 | CG11423-RA | 1155..2027 | 928..56 | 560 | 71.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6061187..6061934 | 204..951 | 3710 | 99.7 | Plus |
2L | 23513712 | 2L | 6060937..6061124 | 17..204 | 940 | 100 | Plus |
2R | 25286936 | 2R | 17596421..17597293 | 928..56 | 510 | 70.6 | Minus |
Blast to na_te.dros performed 2015-02-09 00:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 5849..5945 | 337..239 | 129 | 61.6 | Minus |
BS07881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:43 Download gff for
BS07881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 492..1425 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:49 Download gff for
BS07881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 492..1425 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:49:18 Download gff for
BS07881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 562..1495 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:04:45 Download gff for
BS07881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 562..1495 | 17..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:04:45 Download gff for
BS07881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6060937..6061123 | 17..203 | 100 | <- | Plus |
2L | 6061187..6061933 | 204..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:49:18 Download gff for
BS07881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6060937..6061123 | 17..203 | 100 | <- | Plus |
arm_2L | 6061187..6061933 | 204..950 | 99 | | Plus |
BS07881.5prime Sequence
901 bp (884 high quality bases) assembled on 2006-01-06
> BS07881.5prime
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGG
A
BS07881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-PA | 1425 | CG9140-RA | 1..885 | 17..901 | 4350 | 99.6 | Plus |
CG11423-PA | 2109 | CG11423-RA | 1007..1109 | 399..501 | 165 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1553 | CG9140-RB | 34..918 | 17..901 | 4380 | 99.7 | Plus |
CG9140-RA | 1590 | CG9140-RA | 71..955 | 17..901 | 4380 | 99.7 | Plus |
CG11423-RA | 2143 | CG11423-RA | 741..1510 | 116..885 | 930 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6061540..6062022 | 901..419 | 2385 | 99.6 | Minus |
2L | 23513712 | 2L | 6062074..6062436 | 424..62 | 1785 | 99.4 | Minus |
2R | 25286936 | 2R | 17596007..17596776 | 116..885 | 925 | 74.7 | Plus |
2L | 23513712 | 2L | 6062642..6062687 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:14:33 has no hits.
BS07881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:44 Download gff for
BS07881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:51 Download gff for
BS07881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:00 Download gff for
BS07881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..954 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:42:13 Download gff for
BS07881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..954 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:42:13 Download gff for
BS07881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6061541..6062021 | 420..900 | 99 | <- | Minus |
2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
2L | 6062642..6062687 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:00 Download gff for
BS07881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6061541..6062021 | 420..900 | 99 | <- | Minus |
arm_2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
arm_2L | 6062642..6062687 | 17..62 | 100 | | Minus |
BS07881.complete Sequence
1457 bp (1457 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636020
> BS07881.complete
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGG
ACATGTCAACAGGCCCTGCACTGTGGAGGAGGAAATGTCCATCCCACTCA
AGGAGTTGATTGAGCGCCACTGCGGAGGCGTCACTGGTGGATGGGATAAT
CTGCTAGGCGTCATTCCCGGCGGCTCTTCCACCCCCATCATACCCAAAAA
TGTCTGCGACGATGTTATCATGGACTTCGATGGCCTAATTGCCGCTCAGA
CTTCGCTGGGTACTGCGGCTATCATCGTAATGGACAAGTCGACGGATGTG
ATAAAGGCTATTGCCAGGCTAATTTCATTCTATAAGCATGAGAGCTGTGG
CCAGTGCACGCCATGCCGAGAGGGAATCGGTTGGATGAACAAAATCATGA
CTCGATTTGTTAAGGGTGACGCCCAGCCCGCTGAGATCGATATGCTGTGG
GAGATTTCCAAACAAATTGAGGGACACACTATTTGTGCGCTTGGTGATGG
TGCCGCCTGGCCAGTCCAGGGCCTCATTCGTCACTTCCGGCCCGAGATCG
AGAAACGTATGCAACTGCATGCAAAGCGCGTCAGCAATTAAAAGCTTTCT
AGACCAT
BS07881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1425 | CG9140-PB | 1..1425 | 17..1441 | 7080 | 99.8 | Plus |
CG9140-RA | 1425 | CG9140-PA | 1..1425 | 17..1441 | 7080 | 99.8 | Plus |
CG11423-RA | 2109 | CG11423-PA | 724..2010 | 116..1402 | 1035 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1553 | CG9140-RB | 34..1458 | 17..1441 | 7080 | 99.8 | Plus |
CG9140-RA | 1590 | CG9140-RA | 71..1495 | 17..1441 | 7080 | 99.8 | Plus |
CG11423-RA | 2143 | CG11423-RA | 741..2027 | 116..1402 | 1035 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6061187..6062022 | 1254..419 | 4150 | 99.8 | Minus |
2L | 23513712 | 2L | 6062074..6062436 | 424..62 | 1785 | 99.4 | Minus |
2R | 25286936 | 2R | 17596007..17597293 | 116..1402 | 1035 | 72 | Plus |
2L | 23513712 | 2L | 6060937..6061124 | 1441..1254 | 940 | 100 | Minus |
2L | 23513712 | 2L | 6062642..6062687 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 5849..5945 | 1121..1219 | 129 | 61.6 | Plus |
BS07881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:27 Download gff for
BS07881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 1..1425 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:00 Download gff for
BS07881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1495 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:40 Download gff for
BS07881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1493 | 17..1439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:27 Download gff for
BS07881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1495 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:04 Download gff for
BS07881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1493 | 17..1439 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:04 Download gff for
BS07881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6060939..6061123 | 1255..1439 | 100 | <- | Minus |
2L | 6061187..6062021 | 420..1254 | 99 | <- | Minus |
2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
2L | 6062642..6062687 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:40 Download gff for
BS07881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6060939..6061123 | 1255..1439 | 100 | <- | Minus |
arm_2L | 6061187..6062021 | 420..1254 | 99 | <- | Minus |
arm_2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
arm_2L | 6062642..6062687 | 17..62 | 100 | | Minus |
BS07881.pep Sequence
Translation from 16 to 1440
> BS07881.pep
MAAIVRFNLLTKPQIVATLPASLHVQRFQSTQAPPPGTPPPQTKTKFGPL
ADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGL
RGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDP
HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKN
ACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGV
FGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRP
CTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV
IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPC
REGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPV
QGLIRHFRPEIEKRMQLHAKRVSN*
BS07881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-PB | 474 | CG9140-PB | 1..474 | 1..474 | 2544 | 100 | Plus |
CG9140-PA | 474 | CG9140-PA | 1..474 | 1..474 | 2544 | 100 | Plus |
CG11423-PA | 702 | CG11423-PA | 240..677 | 32..469 | 1934 | 79.7 | Plus |
CG8102-PA | 481 | CG8102-PA | 43..479 | 35..470 | 1228 | 52.7 | Plus |
CG8102-PB | 462 | CG8102-PB | 43..460 | 35..470 | 1127 | 49.8 | Plus |