Clone BS07881 Report

Search the DGRC for BS07881

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG9140-RA
Protein status:BS07881.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07881.3prime Sequence

951 bp (777 high quality bases) assembled on 2006-01-06

> BS07881.3prime
ATGGTCTAGAAAGCTTTTAATTGCTGACGCGCTTTGCATGCAGTTGCATA
CGTTTCTCGATCTCGGGCCGGAAGTGACGAATGAGGCCCTGGACTGGCCA
GGCGGCACCATCACCAAGCGCACAAATAGTGTGTCCCTCAATTTGTTTGG
AAATCTCCCACAGCATATCGATCTCAGCGGGCTGGGCGTCACCCTTAACA
AATCGAGTCATGATTTTGTTCATCCAACCGATTCCCTCTCGGCATGGCGT
GCACTGGCCACAGCTCTCATGCTTATAGAATGAAATTAGCCTGGCAATAG
CCTTTATCACATCCGTCGACTTGTCCATTACGATGATAGCCGCAGTACCC
AGCGAAGTCTGAGCGGCAATTAGGCCATCGAAGTCCATGATAACATCGTC
GCAGACATTTTTGGGTATGATGGGGGTGGAAGAGCCGCCGGGAATGACGC
CTAGCAGATTATCCCATCCACCAGTGACGCCTCCGCAGTGGCGCTCAATC
AACTCCTTGAGTGGGATGGACATTTCCTCCTCCACAGTGCAGGGCCTGTT
GACATGTCCCGAAATGTTGAAGAGCTTGGTGCCCGAGTTACGGGTGCGAC
CGAAGCTGGCGAACCATACACCGCCACGACGGCAAATGGTTGGTGCAACG
GCCACGGTCTCCACATTGGTAACTGTGGTTGGGCAACCGAACACACCCAC
ATCAGCTGGGAATGGCGGCTTCAAGCGTGGCTTTCCCTGCTTTCCTTCCA
GCGATTCGATCAGAGCGGTCTCCTCGCCGCAAATGTAAGCTCCAGCGCCG
CGGTGCATGAAGACGTCGAAGTCGTAGCCAGTTCCGCACGCATTCTTTCC
AATCAGACCAGCCTGGTATGCCTCGGCAATGGCCAGTTGCATGTTGGAAG
CCTCGTTGTAGAACTCGCCACGAATGTAGATGTAGGCAGCCTGGGCGCCC
A

BS07881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-PA 1425 CG9140-RA 491..1425 951..17 4625 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1553 CG9140-RB 524..1458 951..17 4645 99.8 Minus
CG9140-RA 1590 CG9140-RA 561..1495 951..17 4645 99.8 Minus
CG11423-RA 2143 CG11423-RA 1155..2027 928..56 560 71.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061187..6061934 204..951 3710 99.7 Plus
2L 23513712 2L 6060937..6061124 17..204 940 100 Plus
2R 25286936 2R 17596421..17597293 928..56 510 70.6 Minus
Blast to na_te.dros performed 2015-02-09 00:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 5849..5945 337..239 129 61.6 Minus

BS07881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:43 Download gff for BS07881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 492..1425 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:49 Download gff for BS07881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 492..1425 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:49:18 Download gff for BS07881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 562..1495 17..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:04:45 Download gff for BS07881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 562..1495 17..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:04:45 Download gff for BS07881.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6060937..6061123 17..203 100 <- Plus
2L 6061187..6061933 204..950 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:49:18 Download gff for BS07881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6060937..6061123 17..203 100 <- Plus
arm_2L 6061187..6061933 204..950 99   Plus

BS07881.5prime Sequence

901 bp (884 high quality bases) assembled on 2006-01-06

> BS07881.5prime
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGG
A

BS07881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-PA 1425 CG9140-RA 1..885 17..901 4350 99.6 Plus
CG11423-PA 2109 CG11423-RA 1007..1109 399..501 165 86.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1553 CG9140-RB 34..918 17..901 4380 99.7 Plus
CG9140-RA 1590 CG9140-RA 71..955 17..901 4380 99.7 Plus
CG11423-RA 2143 CG11423-RA 741..1510 116..885 930 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061540..6062022 901..419 2385 99.6 Minus
2L 23513712 2L 6062074..6062436 424..62 1785 99.4 Minus
2R 25286936 2R 17596007..17596776 116..885 925 74.7 Plus
2L 23513712 2L 6062642..6062687 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-09 22:14:33 has no hits.

BS07881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:44 Download gff for BS07881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:51 Download gff for BS07881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:00 Download gff for BS07881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..954 17..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:42:13 Download gff for BS07881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..954 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:42:13 Download gff for BS07881.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6061541..6062021 420..900 99 <- Minus
2L 6062079..6062435 63..419 99 <- Minus
2L 6062642..6062687 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:00 Download gff for BS07881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6061541..6062021 420..900 99 <- Minus
arm_2L 6062079..6062435 63..419 99 <- Minus
arm_2L 6062642..6062687 17..62 100   Minus

BS07881.complete Sequence

1457 bp (1457 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636020

> BS07881.complete
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGG
ACATGTCAACAGGCCCTGCACTGTGGAGGAGGAAATGTCCATCCCACTCA
AGGAGTTGATTGAGCGCCACTGCGGAGGCGTCACTGGTGGATGGGATAAT
CTGCTAGGCGTCATTCCCGGCGGCTCTTCCACCCCCATCATACCCAAAAA
TGTCTGCGACGATGTTATCATGGACTTCGATGGCCTAATTGCCGCTCAGA
CTTCGCTGGGTACTGCGGCTATCATCGTAATGGACAAGTCGACGGATGTG
ATAAAGGCTATTGCCAGGCTAATTTCATTCTATAAGCATGAGAGCTGTGG
CCAGTGCACGCCATGCCGAGAGGGAATCGGTTGGATGAACAAAATCATGA
CTCGATTTGTTAAGGGTGACGCCCAGCCCGCTGAGATCGATATGCTGTGG
GAGATTTCCAAACAAATTGAGGGACACACTATTTGTGCGCTTGGTGATGG
TGCCGCCTGGCCAGTCCAGGGCCTCATTCGTCACTTCCGGCCCGAGATCG
AGAAACGTATGCAACTGCATGCAAAGCGCGTCAGCAATTAAAAGCTTTCT
AGACCAT

BS07881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1425 CG9140-PB 1..1425 17..1441 7080 99.8 Plus
CG9140-RA 1425 CG9140-PA 1..1425 17..1441 7080 99.8 Plus
CG11423-RA 2109 CG11423-PA 724..2010 116..1402 1035 72 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1553 CG9140-RB 34..1458 17..1441 7080 99.8 Plus
CG9140-RA 1590 CG9140-RA 71..1495 17..1441 7080 99.8 Plus
CG11423-RA 2143 CG11423-RA 741..2027 116..1402 1035 72 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061187..6062022 1254..419 4150 99.8 Minus
2L 23513712 2L 6062074..6062436 424..62 1785 99.4 Minus
2R 25286936 2R 17596007..17597293 116..1402 1035 72 Plus
2L 23513712 2L 6060937..6061124 1441..1254 940 100 Minus
2L 23513712 2L 6062642..6062687 62..17 230 100 Minus
Blast to na_te.dros performed 2014-11-27 01:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 5849..5945 1121..1219 129 61.6 Plus

BS07881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:27 Download gff for BS07881.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 1..1425 17..1441 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:00 Download gff for BS07881.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1495 17..1441 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:40 Download gff for BS07881.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1493 17..1439 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:27 Download gff for BS07881.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1495 17..1441 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:04 Download gff for BS07881.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1493 17..1439 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:04 Download gff for BS07881.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6060939..6061123 1255..1439 100 <- Minus
2L 6061187..6062021 420..1254 99 <- Minus
2L 6062079..6062435 63..419 99 <- Minus
2L 6062642..6062687 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:40 Download gff for BS07881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6060939..6061123 1255..1439 100 <- Minus
arm_2L 6061187..6062021 420..1254 99 <- Minus
arm_2L 6062079..6062435 63..419 99 <- Minus
arm_2L 6062642..6062687 17..62 100   Minus

BS07881.pep Sequence

Translation from 16 to 1440

> BS07881.pep
MAAIVRFNLLTKPQIVATLPASLHVQRFQSTQAPPPGTPPPQTKTKFGPL
ADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGL
RGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDP
HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKN
ACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGV
FGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRP
CTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV
IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPC
REGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPV
QGLIRHFRPEIEKRMQLHAKRVSN*

BS07881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-PB 474 CG9140-PB 1..474 1..474 2544 100 Plus
CG9140-PA 474 CG9140-PA 1..474 1..474 2544 100 Plus
CG11423-PA 702 CG11423-PA 240..677 32..469 1934 79.7 Plus
CG8102-PA 481 CG8102-PA 43..479 35..470 1228 52.7 Plus
CG8102-PB 462 CG8102-PB 43..460 35..470 1127 49.8 Plus