Clone BS07882 Report

Search the DGRC for BS07882

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptHk-RD
Protein status:BS07882.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07882.3prime Sequence

936 bp (851 high quality bases) assembled on 2006-01-06

> BS07882.3prime
ATGGTCTAGAAAGCTTTCACCGGAGCGCCAAGGTCGAGATCATCGGCGGC
CGCACCGGCTTGTTTTCCAATATCCTTTCCAGCTCCAGCATAACGCTCGA
TGAGAGTCGTGGCAGCAGCTGCAACGACTGCAGACTTTGGTGCAGCTGCT
CCGCCGATGTGGCGCCCAGCAGCAGGCATTGCACTGGCTCATGTTTCAGC
GACCAGGCGATGGACAGCTGGGTGGGGCTGCAGCCCAGCTTCTCGGCGAG
GGCGGCAAGGTCGCGGAGACGGTCGCAGTGGCGGCGCCCCTCATCGATCC
GGTCCTTACCCCAACTGCCCTGCGGCGACAGAGCGGCATTACGATTGATC
TCGTCCTCGGTCCACGAGAAGCTCTTCGTCTTGAAGGAGCCCTTGGGCAG
GAAAAGCTTGTCCCCATTCTGGGTGTCGCTGAGGGCCATCGAGAGTGGAC
CCCAGGCCATGAGGCCCACTCCGATCTTGTTGTACATCTCCGGCAGGTAG
AGTTCGCACTTTTCGCGACAGAACATATGGTACTCGGACTGCTCCACAAT
GGGCGTGATGCAGTTGAACTGGCGGCAGTTGGTATAGGCCTCCATGATCT
CCACCTGGCTCCATCGAGCGGTGCCCCAATACATTGCCCAGCCCTGCTGT
ATCACGTAGCTCATGGCGCGCACCACCTCCATGGGACACATGGGATCCGC
CTTGTGGATGATGACGATATCGATGTACTGCAGCTGCAATCGCTGCAAAC
TGGCACGAACACATTCGATGATGTGTTTCCGGGAGAGACCACGTTCCTCC
GACTTGGTGCTCCAGTAGACCTTCGTGGTGATGACATAGGCGGTCCTCTT
CCAGCCCGCCCGCTGCAGTATCTTGCCGATCTCCGTCTCCGAGTGCGCCT
CCGAGATGTCGAACAGATTGATACCGCTCTCGATGG

BS07882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32688-PA 1644 Hk-RA 725..1644 936..17 4600 100 Minus
CG32688-PB 1179 Hk-RB 260..1179 936..17 4600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RM 3548 CG43388-RM 1431..2350 936..17 4600 100 Minus
Hk-RL 3548 CG43388-RL 1431..2350 936..17 4600 100 Minus
Hk-RK 8450 CG43388-RK 1434..2353 936..17 4600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10240680..10241019 337..676 1700 100 Plus
X 23542271 X 10239679..10239897 119..337 1095 100 Plus
X 23542271 X 10241416..10241550 802..936 675 100 Plus
X 23542271 X 10241114..10241241 676..803 640 100 Plus
X 23542271 X 10239444..10239551 17..124 540 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:08:08 has no hits.

BS07882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:45 Download gff for BS07882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32688-PA 725..1644 17..936 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:52 Download gff for BS07882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32688-PB 260..1179 17..936 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:03:39 Download gff for BS07882.3prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RK 1434..2353 17..936 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:08 Download gff for BS07882.3prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RK 1434..2353 17..936 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:08 Download gff for BS07882.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10239444..10239545 17..118 100 <- Plus
X 10239679..10239897 119..337 100 <- Plus
X 10240681..10241018 338..675 100 <- Plus
X 10241114..10241241 676..803 100 <- Plus
X 10241418..10241550 804..936 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:03:39 Download gff for BS07882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10133477..10133578 17..118 100 <- Plus
arm_X 10133712..10133930 119..337 100 <- Plus
arm_X 10134714..10135051 338..675 100 <- Plus
arm_X 10135147..10135274 676..803 100 <- Plus
arm_X 10135451..10135583 804..936 100   Plus

BS07882.5prime Sequence

833 bp (755 high quality bases) assembled on 2006-01-06

> BS07882.5prime
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCTTCAAGA

BS07882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32688-PB 1179 Hk-RB 1..817 17..833 4085 100 Plus
CG32688-PA 1644 Hk-RA 539..1282 90..833 3720 100 Plus
CG32688-PA 1644 Hk-RA 495..540 19..64 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RG 7021 CG43388-RG 1156..1973 16..833 4090 100 Plus
Hk-RF 3788 CG43388-RF 1411..2228 16..833 4090 100 Plus
Hk-RD 4046 CG43388-RD 1669..2486 16..833 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10241416..10241737 410..89 1610 100 Minus
X 23542271 X 10240722..10241019 833..536 1490 100 Minus
X 23542271 X 10241114..10241241 536..409 640 100 Minus
X 23542271 X 10242808..10242884 91..15 370 98.7 Minus
Blast to na_te.dros performed on 2015-02-04 02:07:25 has no hits.

BS07882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:26:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:53 Download gff for BS07882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32688-PB 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:47:28 Download gff for BS07882.5prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RF 1411..2227 16..832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:15 Download gff for BS07882.5prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RD 1669..2485 16..832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:15 Download gff for BS07882.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10240723..10241018 537..832 100 <- Minus
X 10241114..10241241 409..536 100 <- Minus
X 10241418..10241736 90..408 100 <- Minus
X 10242810..10242890 8..89 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:47:28 Download gff for BS07882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10134756..10135051 537..832 100 <- Minus
arm_X 10135147..10135274 409..536 100 <- Minus
arm_X 10135451..10135769 90..408 100 <- Minus
arm_X 10136843..10136923 8..89 93   Minus

BS07882.complete Sequence

1211 bp (1211 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636021

> BS07882.complete
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCTTCAAGACGAAGAGCTTCTCGTGG
ACCGAGGACGAGATCAATCGTAATGCCGCTCTGTCGCCGCAGGGCAGTTG
GGGTAAGGACCGGATCGATGAGGGGCGCCGCCACTGCGACCGTCTCCGCG
ACCTTGCCGCCCTCGCCGAGAAGCTGGGCTGCAGCCCCACCCAGCTGTCC
ATCGCCTGGTCGCTGAAACATGAGCCAGTGCAATGCCTGCTGCTGGGCGC
CACATCGGCGGAGCAGCTGCACCAAAGTCTGCAGTCGTTGCAGCTGCTGC
CACGACTCTCATCGAGCGTTATGCTGGAGCTGGAAAGGATATTGGAAAAC
AAGCCGGTGCGGCCGCCGATGATCTCGACCTTGGCGCTCCGGTGAAAGCT
TTCTAGACCAT

BS07882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RF 2097 CG43388-PF 918..2097 16..1195 5900 100 Plus
Hk-RG 1179 CG43388-PG 1..1179 17..1195 5895 100 Plus
Hk-RD 1179 CG43388-PD 1..1179 17..1195 5895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RG 7021 CG43388-RG 1156..2335 16..1195 5900 100 Plus
Hk-RF 3788 CG43388-RF 1411..2590 16..1195 5900 100 Plus
Hk-RD 4046 CG43388-RD 1669..2848 16..1195 5900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10240680..10241019 875..536 1700 100 Minus
X 23542271 X 10241416..10241737 410..89 1610 100 Minus
X 23542271 X 10239679..10239897 1093..875 1095 100 Minus
X 23542271 X 10241114..10241241 536..409 640 100 Minus
X 23542271 X 10239444..10239551 1195..1088 540 100 Minus
X 23542271 X 10242808..10242884 91..15 370 98.7 Minus
Blast to na_te.dros performed on 2014-11-27 06:37:31 has no hits.

BS07882.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:28 Download gff for BS07882.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..1179 17..1195 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:34 Download gff for BS07882.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 300..1479 16..1195 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:46 Download gff for BS07882.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RF 1412..2589 17..1194 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:28 Download gff for BS07882.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 300..1479 16..1195 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:58 Download gff for BS07882.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RD 1670..2847 17..1194 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:58 Download gff for BS07882.complete
Subject Subject Range Query Range Percent Splice Strand
X 10239445..10239545 1094..1194 100 <- Minus
X 10239679..10239897 875..1093 100 <- Minus
X 10240681..10241018 537..874 100 <- Minus
X 10241114..10241241 409..536 100 <- Minus
X 10241418..10241736 90..408 100 <- Minus
X 10242810..10242882 17..89 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:46 Download gff for BS07882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10133478..10133578 1094..1194 100 <- Minus
arm_X 10133712..10133930 875..1093 100 <- Minus
arm_X 10134714..10135051 537..874 100 <- Minus
arm_X 10135147..10135274 409..536 100 <- Minus
arm_X 10135451..10135769 90..408 100 <- Minus
arm_X 10136843..10136915 17..89 98   Minus

BS07882.pep Sequence

Translation from 16 to 1194

> BS07882.pep
MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY
KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA
HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL
QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI
MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP
LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI
DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ
LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALR*

BS07882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-PG 392 CG43388-PG 1..392 1..392 2063 100 Plus
Hk-PD 392 CG43388-PD 1..392 1..392 2063 100 Plus
Hk-PF 698 CG43388-PF 307..698 1..392 2063 100 Plus
Hk-PI 393 CG43388-PI 1..393 1..392 2051 99.7 Plus
Hk-PK 548 CG43388-PK 166..548 2..392 1992 98 Plus