Clone Sequence Records
BS07882.3prime Sequence
936 bp (851 high quality bases) assembled on 2006-01-06
> BS07882.3prime
ATGGTCTAGAAAGCTTTCACCGGAGCGCCAAGGTCGAGATCATCGGCGGC
CGCACCGGCTTGTTTTCCAATATCCTTTCCAGCTCCAGCATAACGCTCGA
TGAGAGTCGTGGCAGCAGCTGCAACGACTGCAGACTTTGGTGCAGCTGCT
CCGCCGATGTGGCGCCCAGCAGCAGGCATTGCACTGGCTCATGTTTCAGC
GACCAGGCGATGGACAGCTGGGTGGGGCTGCAGCCCAGCTTCTCGGCGAG
GGCGGCAAGGTCGCGGAGACGGTCGCAGTGGCGGCGCCCCTCATCGATCC
GGTCCTTACCCCAACTGCCCTGCGGCGACAGAGCGGCATTACGATTGATC
TCGTCCTCGGTCCACGAGAAGCTCTTCGTCTTGAAGGAGCCCTTGGGCAG
GAAAAGCTTGTCCCCATTCTGGGTGTCGCTGAGGGCCATCGAGAGTGGAC
CCCAGGCCATGAGGCCCACTCCGATCTTGTTGTACATCTCCGGCAGGTAG
AGTTCGCACTTTTCGCGACAGAACATATGGTACTCGGACTGCTCCACAAT
GGGCGTGATGCAGTTGAACTGGCGGCAGTTGGTATAGGCCTCCATGATCT
CCACCTGGCTCCATCGAGCGGTGCCCCAATACATTGCCCAGCCCTGCTGT
ATCACGTAGCTCATGGCGCGCACCACCTCCATGGGACACATGGGATCCGC
CTTGTGGATGATGACGATATCGATGTACTGCAGCTGCAATCGCTGCAAAC
TGGCACGAACACATTCGATGATGTGTTTCCGGGAGAGACCACGTTCCTCC
GACTTGGTGCTCCAGTAGACCTTCGTGGTGATGACATAGGCGGTCCTCTT
CCAGCCCGCCCGCTGCAGTATCTTGCCGATCTCCGTCTCCGAGTGCGCCT
CCGAGATGTCGAACAGATTGATACCGCTCTCGATGG
BS07882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32688-PA | 1644 | Hk-RA | 725..1644 | 936..17 | 4600 | 100 | Minus |
CG32688-PB | 1179 | Hk-RB | 260..1179 | 936..17 | 4600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RM | 3548 | CG43388-RM | 1431..2350 | 936..17 | 4600 | 100 | Minus |
Hk-RL | 3548 | CG43388-RL | 1431..2350 | 936..17 | 4600 | 100 | Minus |
Hk-RK | 8450 | CG43388-RK | 1434..2353 | 936..17 | 4600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10240680..10241019 | 337..676 | 1700 | 100 | Plus |
X | 23542271 | X | 10239679..10239897 | 119..337 | 1095 | 100 | Plus |
X | 23542271 | X | 10241416..10241550 | 802..936 | 675 | 100 | Plus |
X | 23542271 | X | 10241114..10241241 | 676..803 | 640 | 100 | Plus |
X | 23542271 | X | 10239444..10239551 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:08:08 has no hits.
BS07882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:45 Download gff for
BS07882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32688-PA | 725..1644 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:52 Download gff for
BS07882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32688-PB | 260..1179 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:03:39 Download gff for
BS07882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RK | 1434..2353 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:08 Download gff for
BS07882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RK | 1434..2353 | 17..936 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:08 Download gff for
BS07882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10239444..10239545 | 17..118 | 100 | <- | Plus |
X | 10239679..10239897 | 119..337 | 100 | <- | Plus |
X | 10240681..10241018 | 338..675 | 100 | <- | Plus |
X | 10241114..10241241 | 676..803 | 100 | <- | Plus |
X | 10241418..10241550 | 804..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:03:39 Download gff for
BS07882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10133477..10133578 | 17..118 | 100 | <- | Plus |
arm_X | 10133712..10133930 | 119..337 | 100 | <- | Plus |
arm_X | 10134714..10135051 | 338..675 | 100 | <- | Plus |
arm_X | 10135147..10135274 | 676..803 | 100 | <- | Plus |
arm_X | 10135451..10135583 | 804..936 | 100 | | Plus |
BS07882.5prime Sequence
833 bp (755 high quality bases) assembled on 2006-01-06
> BS07882.5prime
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCTTCAAGA
BS07882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32688-PB | 1179 | Hk-RB | 1..817 | 17..833 | 4085 | 100 | Plus |
CG32688-PA | 1644 | Hk-RA | 539..1282 | 90..833 | 3720 | 100 | Plus |
CG32688-PA | 1644 | Hk-RA | 495..540 | 19..64 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RG | 7021 | CG43388-RG | 1156..1973 | 16..833 | 4090 | 100 | Plus |
Hk-RF | 3788 | CG43388-RF | 1411..2228 | 16..833 | 4090 | 100 | Plus |
Hk-RD | 4046 | CG43388-RD | 1669..2486 | 16..833 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10241416..10241737 | 410..89 | 1610 | 100 | Minus |
X | 23542271 | X | 10240722..10241019 | 833..536 | 1490 | 100 | Minus |
X | 23542271 | X | 10241114..10241241 | 536..409 | 640 | 100 | Minus |
X | 23542271 | X | 10242808..10242884 | 91..15 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:07:25 has no hits.
BS07882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:26:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:53 Download gff for
BS07882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32688-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:47:28 Download gff for
BS07882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RF | 1411..2227 | 16..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:15 Download gff for
BS07882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RD | 1669..2485 | 16..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:15 Download gff for
BS07882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10240723..10241018 | 537..832 | 100 | <- | Minus |
X | 10241114..10241241 | 409..536 | 100 | <- | Minus |
X | 10241418..10241736 | 90..408 | 100 | <- | Minus |
X | 10242810..10242890 | 8..89 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:47:28 Download gff for
BS07882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10134756..10135051 | 537..832 | 100 | <- | Minus |
arm_X | 10135147..10135274 | 409..536 | 100 | <- | Minus |
arm_X | 10135451..10135769 | 90..408 | 100 | <- | Minus |
arm_X | 10136843..10136923 | 8..89 | 93 | | Minus |
BS07882.complete Sequence
1211 bp (1211 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636021
> BS07882.complete
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCTTCAAGACGAAGAGCTTCTCGTGG
ACCGAGGACGAGATCAATCGTAATGCCGCTCTGTCGCCGCAGGGCAGTTG
GGGTAAGGACCGGATCGATGAGGGGCGCCGCCACTGCGACCGTCTCCGCG
ACCTTGCCGCCCTCGCCGAGAAGCTGGGCTGCAGCCCCACCCAGCTGTCC
ATCGCCTGGTCGCTGAAACATGAGCCAGTGCAATGCCTGCTGCTGGGCGC
CACATCGGCGGAGCAGCTGCACCAAAGTCTGCAGTCGTTGCAGCTGCTGC
CACGACTCTCATCGAGCGTTATGCTGGAGCTGGAAAGGATATTGGAAAAC
AAGCCGGTGCGGCCGCCGATGATCTCGACCTTGGCGCTCCGGTGAAAGCT
TTCTAGACCAT
BS07882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RF | 2097 | CG43388-PF | 918..2097 | 16..1195 | 5900 | 100 | Plus |
Hk-RG | 1179 | CG43388-PG | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Hk-RD | 1179 | CG43388-PD | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RG | 7021 | CG43388-RG | 1156..2335 | 16..1195 | 5900 | 100 | Plus |
Hk-RF | 3788 | CG43388-RF | 1411..2590 | 16..1195 | 5900 | 100 | Plus |
Hk-RD | 4046 | CG43388-RD | 1669..2848 | 16..1195 | 5900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10240680..10241019 | 875..536 | 1700 | 100 | Minus |
X | 23542271 | X | 10241416..10241737 | 410..89 | 1610 | 100 | Minus |
X | 23542271 | X | 10239679..10239897 | 1093..875 | 1095 | 100 | Minus |
X | 23542271 | X | 10241114..10241241 | 536..409 | 640 | 100 | Minus |
X | 23542271 | X | 10239444..10239551 | 1195..1088 | 540 | 100 | Minus |
X | 23542271 | X | 10242808..10242884 | 91..15 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:37:31 has no hits.
BS07882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:28 Download gff for
BS07882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RB | 1..1179 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:34 Download gff for
BS07882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RB | 300..1479 | 16..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:46 Download gff for
BS07882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RF | 1412..2589 | 17..1194 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:28 Download gff for
BS07882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RB | 300..1479 | 16..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:58 Download gff for
BS07882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RD | 1670..2847 | 17..1194 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:58 Download gff for
BS07882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10239445..10239545 | 1094..1194 | 100 | <- | Minus |
X | 10239679..10239897 | 875..1093 | 100 | <- | Minus |
X | 10240681..10241018 | 537..874 | 100 | <- | Minus |
X | 10241114..10241241 | 409..536 | 100 | <- | Minus |
X | 10241418..10241736 | 90..408 | 100 | <- | Minus |
X | 10242810..10242882 | 17..89 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:46 Download gff for
BS07882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10133478..10133578 | 1094..1194 | 100 | <- | Minus |
arm_X | 10133712..10133930 | 875..1093 | 100 | <- | Minus |
arm_X | 10134714..10135051 | 537..874 | 100 | <- | Minus |
arm_X | 10135147..10135274 | 409..536 | 100 | <- | Minus |
arm_X | 10135451..10135769 | 90..408 | 100 | <- | Minus |
arm_X | 10136843..10136915 | 17..89 | 98 | | Minus |
BS07882.pep Sequence
Translation from 16 to 1194
> BS07882.pep
MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY
KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA
HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL
QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI
MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP
LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI
DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ
LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALR*
BS07882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-PG | 392 | CG43388-PG | 1..392 | 1..392 | 2063 | 100 | Plus |
Hk-PD | 392 | CG43388-PD | 1..392 | 1..392 | 2063 | 100 | Plus |
Hk-PF | 698 | CG43388-PF | 307..698 | 1..392 | 2063 | 100 | Plus |
Hk-PI | 393 | CG43388-PI | 1..393 | 1..392 | 2051 | 99.7 | Plus |
Hk-PK | 548 | CG43388-PK | 166..548 | 2..392 | 1992 | 98 | Plus |