Clone Sequence Records
BS07884.3prime Sequence
815 bp (786 high quality bases) assembled on 2006-01-06
> BS07884.3prime
ATGGTCTAGAAAGCTTCTAAAAGGCTTCTTCCTGAGGCGTATGTCCATTT
AGTGAGCCCAAAGCGGGCACGGGCATTCCTGCAGCTTTCATCTCCGCCAC
AATCCGCTTGTTGATAATGTTTCGGATGTTGGCATTCACATCCGGCAGAA
GTCCACCTGTTCGAGCTGCGTGCTCAATTCGCTGGACGACGTCGATTTCG
CGGCGCGATGATATCAGGTTCGTGACTAGCGCCTTGTCCATGTTGCCCAC
CCGACCGATCCTGCCACAACGATGGATATAATCGGAGACGTGGAGCGGAA
AGTCAAAGTTGACCACATGTCGAGCTCGTGTGGTATCCAGGCCACGACTT
CCCACATCGGTGGTGGAAAGGACGTCGCAGTGACCGTTTTGGAACTGCTC
GAAGCGGCCAAGACGGATCTTCATCAGCATATCCCCATTCAGATTTAAGC
AGTTCACTCCGCTGTTGTTCAGGAAGATGGAAACGAAGTCACTGGTGGTG
GACTTGTTGCTGAACACGATAAGAGGGCGACGTTTGGCAAGATCATGCTT
CACGAGTGACAGAAGTGTGGCGGGCCGATCGGCCTTCGACAGCCGCAGGA
ACTTCTGCGTCACATGAGACATCAGTCGGTGCAGGTGCGGACTGACGACC
TCACGGATGGTGTCCACGTCTATGACTTTGTGAAGGATCTCTCTGGTGTT
CGTGGGCATGGTGGCCGAGGCCAGGATCATCTGGGTGCCAGCATCCTCCT
TTTGCACCAAGTGGAAGGGAAATCTCCTGAGGAAGTAGGAAAGTTTGTCT
GTGAACGTATCATCT
BS07884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3561-PA | 1611 | CG3561-RA | 813..1611 | 815..17 | 3995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1732 | CG3561-RA | 865..1663 | 815..17 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 812562..813311 | 766..17 | 3750 | 100 | Minus |
| 2L | 23513712 | 2L | 812448..812496 | 815..767 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:30:22 has no hits.
BS07884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:50 Download gff for
BS07884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 813..1611 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:57 Download gff for
BS07884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 813..1611 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:03:46 Download gff for
BS07884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 865..1667 | 12..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:35:05 Download gff for
BS07884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 865..1667 | 12..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:35:05 Download gff for
BS07884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 812448..812496 | 767..815 | 100 | -> | Minus |
| 2L | 812562..813315 | 12..766 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:03:46 Download gff for
BS07884.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 812448..812496 | 767..815 | 100 | -> | Minus |
| arm_2L | 812562..813315 | 12..766 | 99 | | Minus |
BS07884.5prime Sequence
893 bp (786 high quality bases) assembled on 2006-01-06
> BS07884.5prime
GAAGTTATCAGTCGACATGCTGAACTTGTCCGTGGTGCTCCGGGTGCAAT
CATCGCGCCATGTGGCTTCATATGCCACAGCGGCGGCGGCGGCAGTTAAG
ACGAAGCCACCAAAGGCAAAGTCCAAGGGCAAAAAGCAGAAGGGGGAGCC
CCTAATCTCCTGCAGAAGAAGCCAGTTCGATTTAACCCAATACGAGCAGA
CGGATGCCAAGTTTGGGAGTCTTTCGCTGGCCTCCAAGGGCTGGCTGCAC
AACAAATCCAAGGGAGACTTCTTCATCTTGAACGCCAGCGTGCGAGGTGA
GGAACTCCAGCAGGAAATGCAGACCGTCGATGAGTTCCTCGAGAGCACGG
GGATGCAGATTCATCCGCAACTCCTTGAGAACTTGCGAGTCGAGCTGGGC
ATCAAATTACTGACGGGAATCCAAAAACAGGGAATGCCCGTTGTCCATGG
AAATGAGCACTGCCTCATTGCCGCTGAAACTGGGTGTGGAAAAACAATTA
CATATCTCCTGCCTATCGTAGACAAACTCCTCCAGAAAGAAGTGGTCACC
GAACGAAAACTCAACACCCCCCGTGTCTTGATCCTCACTCCCGGCAGAGA
ACTAGCCACGCAGATTGCTGGGGTCACGGAGAAGCTCACCCAGGGCACCA
ATCTCAAAGTGCAATCTTTACTTGGCGGCAATACCAAGCAGCTTATGATG
AACCCACAGTTCGAGGAGGTGGACATACTGGTCGCCACTCTGGGTGCACT
TAGCAAACTGGTGACCACTGGCATCTACCGCATGGAGCAGGTTCGTCATC
TGGTTCTAGACGAAGCGGACACCCTCCTAGATGATACGTTCACAGACAAA
CTTTCCTACTTCCTCAGGAGATTTCCCTTTCACTTGGTGCAAA
BS07884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3561-PA | 1611 | CG3561-RA | 1..877 | 17..893 | 4335 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1732 | CG3561-RA | 52..929 | 16..893 | 4360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 811635..812496 | 16..877 | 4295 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:56:03 has no hits.
BS07884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:52 Download gff for
BS07884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:58 Download gff for
BS07884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:05 Download gff for
BS07884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 52..926 | 16..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:59 Download gff for
BS07884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 52..926 | 16..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:59 Download gff for
BS07884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 811635..812496 | 16..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:05 Download gff for
BS07884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 811635..812496 | 16..877 | 99 | | Plus |
BS07884.complete Sequence
1643 bp (1643 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636023
> BS07884.complete
GAAGTTATCAGTCGACATGCTGAACTTGTCCGTGGTGCTCCGGGTGCAAT
CATCGCGCCATGTGGCTTCATATGCCACAGCGGCGGCGGCGGCAGTTAAG
ACGAAGCCACCAAAGGCAAAGTCCAAGGGCAAAAAGCAGAAGGGGGAGCC
CCTAATCTCCTGCAGAAGAAGCCAGTTCGATTTAACCCAATACGAGCAGA
CGGATGCCAAGTTTGGGAGTCTTTCGCTGGCCTCCAAGGGCTGGCTGCAC
AACAAATCCAAGGGAGACTTCTTCATCTTGAACGCCAGCGTGCGAGGTGA
GGAACTCCAGCAGGAAATGCAGACCGTCGATGAGTTCCTCGAGAGCACGG
GGATGCAGATTCATCCGCAACTCCTTGAGAACTTGCGAGTCGAGCTGGGC
ATCAAATTACTGACGGGAATCCAAAAACAGGGAATGCCCGTTGTCCATGG
AAATGAGCACTGCCTCATTGCCGCTGAAACTGGGTGTGGAAAAACAATTA
CATATCTCCTGCCTATCGTAGACAAACTCCTCCAGAAAGAAGTGGTCACC
GAACGAAAACTCAACACCCCCCGTGTCTTGATCCTCACTCCCGGCAGAGA
ACTAGCCACGCAGATTGCTGGGGTCACGGAGAAGCTCACCCAGGGCACCA
ATCTCAAAGTGCAATCTTTACTTGGCGGCAATACCAAGCAGCTTATGATG
AACCCACAGTTCGAGGAGGTGGACATACTGGTCGCCACTCTGGGTGCACT
TAGCAAACTGGTGACCACTGGCATCTACCGCATGGAGCAGGTTCGTCATC
TGGTTCTAGACGAAGCGGACACCCTCCTAGATGATACGTTCACAGACAAA
CTTTCCTACTTCCTCAGGAGATTTCCCTTCCACTTGGTGCAAAAGGAGGA
TGCTGGCACCCAGATGATCCTGGCCTCGGCCACCATGCCCACGAACACCA
GAGAGATCCTTCACAAAGTCATAGACGTGGACACCATCCGTGAGGTCGTC
AGTCCGCACCTGCACCGACTGATGTCTCATGTGACGCAGAAGTTCCTGCG
GCTGTCGAAGGCCGATCGGCCCGCCACACTTCTGTCACTCGTGAAGCATG
ATCTTGCCAAACGTCGCCCTCTTATCGTGTTCAGCAACAAGTCCACCACC
AGTGACTTCGTTTCCATCTTCCTGAACAACAGCGGAGTGAACTGCTTAAA
TCTGAATGGGGATATGCTGATGAAGATCCGTCTTGGCCGCTTCGAGCAGT
TCCAAAACGGTCACTGCGACGTCCTTTCCACCACCGATGTGGGAAGTCGT
GGCCTGGATACCACACGAGCTCGACATGTGGTCAACTTTGACTTTCCGCT
CCACGTCTCCGATTATATCCATCGTTGTGGCAGGATCGGTCGGGTGGGCA
ACATGGACAAGGCGCTAGTCACGAACCTGATATCATCGCGCCGCGAAATC
GACGTCGTCCAGCGAATTGAGCACGCAGCTCGAACAGGTGGACTTCTGCC
GGATGTGAATGCCAACATCCGAAACATTATCAACAAGCGGATTGTGGCGG
AGATGAAAGCTGCAGGAATGCCCGTGCCCGCTTTGGGCTCACTAAATGGA
CATACGCCTCAGGAAGAAGCCTTTTAGAAGCTTTCTAGACCAT
BS07884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1611 | CG3561-PA | 1..1611 | 17..1627 | 8040 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1732 | CG3561-RA | 52..1663 | 16..1627 | 8045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 811635..812496 | 16..877 | 4295 | 99.9 | Plus |
| 2L | 23513712 | 2L | 812562..813311 | 878..1627 | 3750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:48:04 has no hits.
BS07884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:29 Download gff for
BS07884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KH1-RA | 1..1611 | 17..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:02 Download gff for
BS07884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KH1-RA | 2..1619 | 15..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:12 Download gff for
BS07884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 53..1663 | 17..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:29 Download gff for
BS07884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KH1-RA | 2..1619 | 15..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:16 Download gff for
BS07884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 53..1663 | 17..1627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:16 Download gff for
BS07884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 811636..812496 | 17..877 | 99 | -> | Plus |
| 2L | 812562..813311 | 878..1627 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:12 Download gff for
BS07884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 811636..812496 | 17..877 | 99 | -> | Plus |
| arm_2L | 812562..813311 | 878..1627 | 100 | | Plus |
BS07884.pep Sequence
Translation from 16 to 1626
> BS07884.pep
MLNLSVVLRVQSSRHVASYATAAAAAVKTKPPKAKSKGKKQKGEPLISCR
RSQFDLTQYEQTDAKFGSLSLASKGWLHNKSKGDFFILNASVRGEELQQE
MQTVDEFLESTGMQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEHCL
IAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTPGRELATQI
AGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVT
TGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQM
ILASATMPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKAD
RPATLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDM
LMKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDY
IHRCGRIGRVGNMDKALVTNLISSRREIDVVQRIEHAARTGGLLPDVNAN
IRNIINKRIVAEMKAAGMPVPALGSLNGHTPQEEAF*
BS07884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-PA | 536 | CG3561-PA | 1..536 | 1..536 | 2715 | 100 | Plus |
| vas-PA | 661 | CG3506-PA | 235..615 | 92..490 | 406 | 29.8 | Plus |
| vas-PC | 661 | CG43081-PC | 235..615 | 92..490 | 406 | 29.8 | Plus |
| bel-PA | 798 | CG9748-PA | 283..659 | 108..466 | 399 | 29.5 | Plus |
| bel-PB | 801 | CG9748-PB | 283..659 | 108..466 | 399 | 29.5 | Plus |
