Clone BS07888 Report

Search the DGRC for BS07888

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptBCL7-like-RA
Protein status:BS07888.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07888.5prime Sequence

495 bp (494 high quality bases) assembled on 2006-01-06

> BS07888.5prime
GAAGTTATCAGTCGACATGTCGCGCAGCGTGCGGGCGGAGACGCGCAGCC
GGGCGAAGGATGACATCAAGCGGGTGATGCAGGCGGTGGACAAGGTGCGC
CACTGGGAGAAGAAGTGGGTGACCATCAGCGACACCACCATGAAAATCTA
CAAATGGGTGCCCATCGCCTCCGCCAGTGAGAAGAAGGCCAAGCTGGAGT
CCTCGCCGGGATCGGCTGCTGTCCGGAGACCGCCCCCCGGCTCGGGCGTT
ACGCCGGTCGGCGGCAGCAAGAGCGATAAGGAGAACTCTCAGAAGGGCAC
GCCCACGCCGCCGCAGATCACGCCCAGCTACCAGGGACTAACCGCCGAGG
ACTCTAACACCTGTTTCTCCGTCGTGTCCGACAGCCAGGGCGCCGACTTC
GTGTCGAGTATGCCCTTCTCTGAGGACTCGAACTCGCAGGGCAGCGATGG
ACCCGTGAAGCGATTGAAGACGAGCGACTAGAAGCTTTCTAGACC

BS07888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17252-PA 465 BCL7-like-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like-RA 1664 CG17252-RA 284..751 14..481 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9356917..9357267 14..364 1755 100 Plus
X 23542271 X 9357563..9357681 363..481 595 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:57:41 has no hits.

BS07888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:00 Download gff for BS07888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17252-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:11 Download gff for BS07888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17252-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:34:45 Download gff for BS07888.5prime
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 280..761 9..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:25 Download gff for BS07888.5prime
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 280..761 9..489 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:25 Download gff for BS07888.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9356913..9357265 9..362 99 -> Plus
X 9357563..9357691 363..489 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:34:45 Download gff for BS07888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9250946..9251298 9..362 99 -> Plus
arm_X 9251596..9251724 363..489 96   Plus

BS07888.3prime Sequence

495 bp (494 high quality bases) assembled on 2006-01-06

> BS07888.3prime
ATGGTCTAGAAAGCTTCTAGTCGCTCGTCTTCAATCGCTTCACGGGTCCA
TCGCTGCCCTGCGAGTTCGAGTCCTCAGAGAAGGGCATACTCGACACGAA
GTCGGCGCCCTGGCTGTCGGACACGACGGAGAAACAGGTGTTAGAGTCCT
CGGCGGTTAGTCCCTGGTAGCTGGGCGTGATCTGCGGCGGCGTGGGCGTG
CCCTTCTGAGAGTTCTCCTTATCGCTCTTGCTGCCGCCGACCGGCGTAAC
GCCCGAGCCGGGGGGCGGTCTCCGGACAGCAGCCGATCCCGGCGAGGACT
CCAGCTTGGCCTTCTTCTCACTGGCGGAGGCGATGGGCACCCATTTGTAG
ATTTTCATGGTGGTGTCGCTGATGGTCACCCACTTCTTCTCCCAGTGGCG
CACCTTGTCCACCGCCTGCATCACCCGCTTGATGTCATCCTTCGCCCGGC
TGCGCGTCTCCGCCCGCACGCTGCGCGACATGTCGACTGATAACT

BS07888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17252-PA 465 BCL7-like-RA 1..465 481..17 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like-RA 1664 CG17252-RA 284..751 484..17 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9356917..9357267 484..134 1755 100 Minus
X 23542271 X 9357563..9357681 135..17 595 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:43:06 has no hits.

BS07888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:59 Download gff for BS07888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17252-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:09 Download gff for BS07888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17252-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:16 Download gff for BS07888.3prime
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 280..761 9..489 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:25 Download gff for BS07888.3prime
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 280..761 9..489 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:25 Download gff for BS07888.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9356913..9357265 136..489 99 -> Minus
X 9357563..9357691 9..135 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:16 Download gff for BS07888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9250946..9251298 136..489 99 -> Minus
arm_X 9251596..9251724 9..135 96   Minus

BS07888.complete Sequence

497 bp (497 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636024

> BS07888.complete
GAAGTTATCAGTCGACATGTCGCGCAGCGTGCGGGCGGAGACGCGCAGCC
GGGCGAAGGATGACATCAAGCGGGTGATGCAGGCGGTGGACAAGGTGCGC
CACTGGGAGAAGAAGTGGGTGACCATCAGCGACACCACCATGAAAATCTA
CAAATGGGTGCCCATCGCCTCCGCCAGTGAGAAGAAGGCCAAGCTGGAGT
CCTCGCCGGGATCGGCTGCTGTCCGGAGACCGCCCCCCGGCTCGGGCGTT
ACGCCGGTCGGCGGCAGCAAGAGCGATAAGGAGAACTCTCAGAAGGGCAC
GCCCACGCCGCCGCAGATCACGCCCAGCTACCAGGGACTAACCGCCGAGG
ACTCTAACACCTGTTTCTCCGTCGTGTCCGACAGCCAGGGCGCCGACTTC
GTGTCGAGTATGCCCTTCTCTGAGGACTCGAACTCGCAGGGCAGCGATGG
ACCCGTGAAGCGATTGAAGACGAGCGACTAGAAGCTTTCTAGACCAT

BS07888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like-RA 465 CG17252-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like-RA 1664 CG17252-RA 284..751 14..481 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9356917..9357267 14..364 1755 100 Plus
X 23542271 X 9357563..9357681 363..481 595 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:37:59 has no hits.

BS07888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:56 Download gff for BS07888.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:12 Download gff for BS07888.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 268..749 9..489 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:00 Download gff for BS07888.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 287..751 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:56 Download gff for BS07888.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 268..749 9..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:05 Download gff for BS07888.complete
Subject Subject Range Query Range Percent Splice Strand
BCL7-like-RA 287..751 17..481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:05 Download gff for BS07888.complete
Subject Subject Range Query Range Percent Splice Strand
X 9356920..9357265 17..362 100 -> Plus
X 9357563..9357681 363..481 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:00 Download gff for BS07888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9250953..9251298 17..362 100 -> Plus
arm_X 9251596..9251714 363..481 100   Plus

BS07888.pep Sequence

Translation from 16 to 480

> BS07888.pep
MSRSVRAETRSRAKDDIKRVMQAVDKVRHWEKKWVTISDTTMKIYKWVPI
ASASEKKAKLESSPGSAAVRRPPPGSGVTPVGGSKSDKENSQKGTPTPPQ
ITPSYQGLTAEDSNTCFSVVSDSQGADFVSSMPFSEDSNSQGSDGPVKRL
KTSD*

BS07888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
BCL7-like-PA 154 CG17252-PA 1..154 1..154 794 100 Plus