Clone BS07889 Report

Search the DGRC for BS07889

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG12207-RB
Protein status:BS07889.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07889.3prime Sequence

967 bp (818 high quality bases) assembled on 2006-01-06

> BS07889.3prime
ATGGTCTAGAAAGCTTCTACAACTCAAAGAAGTCGTCCTGCTGCTTCTCC
AGCCGCTTCAGCGAATTCTGGACTCGTCGCGTCTGCGTCGTGTTCAGCAG
GTGCGCCGTATCCGAGGAGTTCCCGCTGCCCGTCGAGCTGTGGCGCTGAT
ACTGCGACGGACGGTCGTTGTTGTTGGTCTTGTAGGAGTTGTTCAGCGGA
TGGCGGCGCTGCGGGAAAACGTCGGCGGTGGCACTGATGCAGATGTCCGC
ATCACTCTGACTGCTGACCAGGTCCTTAGAGCGCTCCACATATTTGCGCG
ACTCAGAAATGGTGTTGTCTATCTTGTTAAGGAAGTCGTTCATGCATTTC
CTGTTCTCCTCCTCGGGCGTCATTGCGGCCACCGAGTCCAGGCTCTTGCT
CTGCTTGCCGCTGCAACCACCGTGGCCGTGCATCATCGATGGATCCTCGT
CGCCGGCCTGCACCACCAGCAGCTCCCCGGCAATGGAGTAGGGACGTTGT
GGGGGCTGTTGCTGCTGCTGCTGTTGGTTGCCGCCGGAACGCGATCCTCC
GGAAATGGGGCCGGTGCCACTTGTGTTGCAGCTGCTGCTGCTCCCACTGC
TGCTGCTGCTACTGCTGCTGCTGATGTCGTTGCTCTTCATGAAGCTCTTG
TTGCTCTGGCTCAGATTATTGGCATTGTTGTGCGCCTCCCGCTGTCCATT
GGCATCCGGAGTGCCCGGTGGCGTGGCCAGCACGGCGTCGAAAGCGGCTA
TCGAATCGCCAGGCACCTGGGGATAGTACGGTGAGTTCTTCTCCACTGGA
ACGAGGAGAAACTGACGCAGGAACAGGCTGTCCGAGGCGAAGAGGCGGTT
GGCCCGTCTTATTTGCTCCGTCGTGCAGCCGTACTTGAGGGCGATGCCCT
GCAGCGTGTCCGTCTTCTCGACGATGTGCCGGAATGAGGGTCTCATTTGT
TCCGGAGGCTGTTGCAG

BS07889.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PB 1101 CG12207-RB 185..1101 933..17 4585 100 Minus
CG12207-PC 1101 CG12207-RC 185..1101 933..17 4585 100 Minus
CG12207-PA 1032 CG12207-RA 116..1032 933..17 4585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 2535 CG12207-RG 794..1742 967..17 4705 99.8 Minus
CG12207-RF 2113 CG12207-RF 372..1320 967..17 4705 99.8 Minus
CG12207-RE 1927 CG12207-RE 186..1134 967..17 4705 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14300419..14301018 872..273 3000 100 Minus
3R 32079331 3R 14301228..14301483 272..17 1280 100 Minus
3R 32079331 3R 14298894..14298987 967..872 380 97.9 Minus
Blast to na_te.dros performed 2015-02-02 20:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 661..496 319 68.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 659..496 275 66.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 681..514 220 61.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 639..484 216 63.7 Minus
roo 9092 roo DM_ROO 9092bp 1062..1157 592..493 165 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 611..496 161 64.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 646..496 149 58.2 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 662..496 146 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 695..493 138 56.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 591..496 130 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 536..496 120 79.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 536..496 120 79.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2842 582..489 115 59.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2376 533..493 111 76.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6758 528..496 111 81.8 Minus

BS07889.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:01 Download gff for BS07889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-PB 153..1101 17..967 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:12 Download gff for BS07889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-PA 84..1032 17..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:49 Download gff for BS07889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RD 317..1265 17..967 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:11 Download gff for BS07889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RE 186..1134 17..967 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:11 Download gff for BS07889.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14298894..14298987 872..967 97 -> Minus
3R 14300420..14301018 273..871 100 -> Minus
3R 14301228..14301483 17..272 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:49 Download gff for BS07889.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10124616..10124709 872..967 97 -> Minus
arm_3R 10126142..10126740 273..871 100 -> Minus
arm_3R 10126950..10127205 17..272 100   Minus

BS07889.5prime Sequence

899 bp (769 high quality bases) assembled on 2006-01-06

> BS07889.5prime
GAAGTTATCAGTCGACATGGATTACATTGTGAAGGCCTACAAGGATTGGA
AACTGCATTCGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAA
TTCATGTTCAACGAGAAGCAATCGATCCGGGACTCCGGGCGCACCCTCAA
GCGCTACGGGAGCACCTGCTGCAACAGCCTCCGGAACAATGAGACCCTCA
TCCGGCACATCGTCGAGAAGACGGACACGCTGCAGGGCATCGCCCTCAAG
TACGGCTGCACGACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGCCTC
GGACAGCCTGTTCCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGAACT
CACCGTACTATCCCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGACGCC
GTGCTGGCCACGCCACCGGGCACTCCGGATGCCAATGGACAGCGGGAGGC
GCACAACAATGCCAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGA
GCAACGACATCAGCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGCAGC
AGCTGCAACACAAGTGGCACCGGCCCCATTTCCGGAGGATCGCGTTCCGG
CGGCAACCAACAGCAGCAGCAGCAACAGCCCCCACAACGTCCCTACTCCA
TTGCCGGGGAGCTGCTGGTGGTGCAGGCCGGCGACGAGGATCCATCGATG
ATGCACGGCCACGGTGGTTGCAGCGGCAAGCAGAGCAAGAGCCTGGACTC
GGTGGCCGCAATGACGCCCGAGGAGGAGAACAGGAAATGCATGAACGACT
TCCCTTACAAGATAGACAACACCATTTCTGAGTCGCGCAAATATGTGGAG
CGCTCTAAGGACCTGGTCAGCAGTCAGAGTGATGCGGACATCTGCATCA

BS07889.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PB 1101 CG12207-RB 1..883 17..899 4365 99.7 Plus
CG12207-PC 1101 CG12207-RC 1..883 17..899 4365 99.7 Plus
CG12207-PA 1032 CG12207-RA 1..814 86..899 4020 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 2535 CG12207-RG 642..1524 17..899 4385 99.8 Plus
CG12207-RF 2113 CG12207-RF 220..1102 17..899 4385 99.8 Plus
CG12207-RC 1997 CG12207-RC 104..986 17..899 4385 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14300419..14301018 262..861 2970 99.7 Plus
3R 32079331 3R 14298786..14298987 61..262 1010 100 Plus
3R 32079331 3R 14290773..14290820 17..64 240 100 Plus
3R 32079331 3R 14301228..14301265 862..899 190 100 Plus
Blast to na_te.dros performed 2015-02-11 09:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 473..638 319 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 475..638 275 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 453..620 220 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 495..650 216 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1157 542..641 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 523..638 161 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 488..638 149 58.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 472..638 146 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 439..641 138 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 543..638 130 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 598..638 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 598..638 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2842 552..645 115 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2376 601..641 111 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6758 606..638 111 81.8 Plus

BS07889.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:02 Download gff for BS07889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-PB 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:13 Download gff for BS07889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-PC 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:09:02 Download gff for BS07889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 419..1303 14..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:41 Download gff for BS07889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 101..985 14..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:41 Download gff for BS07889.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14290770..14290820 14..64 98 -> Plus
3R 14298790..14298987 65..262 100 -> Plus
3R 14300420..14301018 263..861 99 -> Plus
3R 14301228..14301264 862..898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:09:02 Download gff for BS07889.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10116492..10116542 14..64 98 -> Plus
arm_3R 10124512..10124709 65..262 100 -> Plus
arm_3R 10126142..10126740 263..861 99 -> Plus
arm_3R 10126950..10126986 862..898 100   Plus

BS07889.complete Sequence

1133 bp (1133 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636025

> BS07889.complete
GAAGTTATCAGTCGACATGGATTACATTGTGAAGGCCTACAAGGATTGGA
AACTGCATTCGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAA
TTCATGTTCAACGAGAAGCAATCGATCCGGGACTCCGGGCGCACCCTCAA
GCGCTACGGGAGCACCTGCTGCAACAGCCTCCGGAACAATGAGACCCTCA
TCCGGCACATCGTCGAGAAGACGGACACGCTGCAGGGCATCGCCCTCAAG
TACGGCTGCACGACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGCCTC
GGACAGCCTGTTCCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGAACT
CACCGTACTATCCCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGACGCC
GTGCTGGCCACGCCACCGGGCACTCCGGATGCCAATGGACAGCGGGAGGC
GCACAACAATGCCAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGA
GCAACGACATCAGCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGCAGC
AGCTGCAACACAAGTGGCACCGGCCCCATTTCCGGAGGATCGCGTTCCGG
CGGCAACCAACAGCAGCAGCAGCAACAGCCCCCACAACGTCCCTACTCCA
TTGCCGGGGAGCTGCTGGTGGTGCAGGCCGGCGACGAGGATCCATCGATG
ATGCACGGCCACGGTGGTTGCAGCGGCAAGCAGAGCAAGAGCCTGGACTC
GGTGGCCGCAATGACGCCCGAGGAGGAGAACAGGAAATGCATGAACGACT
TCCTTAACAAGATAGACAACACCATTTCTGAGTCGCGCAAATATGTGGAG
CGCTCTAAGGACCTGGTCAGCAGTCAGAGTGATGCGGACATCTGCATCAG
TGCCACCGCCGACGTTTTCCCGCAGCGCCGCCATCCGCTGAACAACTCCT
ACAAGACCAACAACAACGACCGTCCGTCGCAGTATCAGCGCCACAGCTCG
ACGGGCAGCGGGAACTCCTCGGATACGGCGCACCTGCTGAACACGACGCA
GACGCGACGAGTCCAGAATTCGCTGAAGCGGCTGGAGAAGCAGCAGGACG
ACTTCTTTGAGTTGTAGAAGCTTTCTAGACCAT

BS07889.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 1101 CG12207-PG 1..1101 17..1117 5505 100 Plus
CG12207-RF 1101 CG12207-PF 1..1101 17..1117 5505 100 Plus
CG12207-RC 1101 CG12207-PC 1..1101 17..1117 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 2535 CG12207-RG 642..1742 17..1117 5505 100 Plus
CG12207-RF 2113 CG12207-RF 220..1320 17..1117 5505 100 Plus
CG12207-RC 1997 CG12207-RC 104..1204 17..1117 5505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14300419..14301018 262..861 3000 100 Plus
3R 32079331 3R 14301228..14301483 862..1117 1280 100 Plus
3R 32079331 3R 14298786..14298987 61..262 1010 100 Plus
3R 32079331 3R 14290773..14290820 17..64 240 100 Plus
Blast to na_te.dros performed 2014-11-28 05:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 473..638 319 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 475..638 275 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 453..620 220 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 495..650 216 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1157 542..641 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 523..638 161 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 488..638 149 58.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 472..638 146 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 439..641 138 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 543..638 130 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 598..638 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 598..638 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2376 601..641 111 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6758 606..638 111 81.8 Plus

BS07889.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:30 Download gff for BS07889.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 1..1101 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:26 Download gff for BS07889.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 66..1166 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:27 Download gff for BS07889.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 422..1522 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:31 Download gff for BS07889.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 63..1166 14..1117 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:34 Download gff for BS07889.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 104..1204 17..1117 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:34 Download gff for BS07889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14290773..14290820 17..64 100 -> Plus
3R 14298790..14298987 65..262 100 -> Plus
3R 14300420..14301018 263..861 100 -> Plus
3R 14301228..14301483 862..1117 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:27 Download gff for BS07889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10116495..10116542 17..64 100 -> Plus
arm_3R 10124512..10124709 65..262 100 -> Plus
arm_3R 10126142..10126740 263..861 100 -> Plus
arm_3R 10126950..10127205 862..1117 100   Plus

BS07889.pep Sequence

Translation from 16 to 1116

> BS07889.pep
MDYIVKAYKDWKLHSQFQEIVPDMDDSEFMFNEKQSIRDSGRTLKRYGST
CCNSLRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFL
RQFLLVPVEKNSPYYPQVPGDSIAAFDAVLATPPGTPDANGQREAHNNAN
NLSQSNKSFMKSNDISSSSSSSSSGSSSSCNTSGTGPISGGSRSGGNQQQ
QQQQPPQRPYSIAGELLVVQAGDEDPSMMHGHGGCSGKQSKSLDSVAAMT
PEEENRKCMNDFLNKIDNTISESRKYVERSKDLVSSQSDADICISATADV
FPQRRHPLNNSYKTNNNDRPSQYQRHSSTGSGNSSDTAHLLNTTQTRRVQ
NSLKRLEKQQDDFFEL*

BS07889.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PG 366 CG12207-PG 1..366 1..366 1904 100 Plus
CG12207-PF 366 CG12207-PF 1..366 1..366 1904 100 Plus
CG12207-PC 366 CG12207-PC 1..366 1..366 1904 100 Plus
CG12207-PB 366 CG12207-PB 1..366 1..366 1904 100 Plus
CG12207-PE 343 CG12207-PE 1..343 24..366 1777 100 Plus