Clone BS07890 Report

Search the DGRC for BS07890

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptZnT63C-RC
Protein status:BS07890.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07890.3prime Sequence

891 bp (762 high quality bases) assembled on 2006-01-06

> BS07890.3prime
ATGGTCTAGAAAGCTTTCAAACCAAATCGCTCTTCGGCGTTGACGTGGCC
CCTATCGCAGCCACGGGCGCTCCTGTGCTGGCCCCACCAGTGGCTCCCTG
GTTGCCACTGGACGTGGCCTCCAGCAGGGAACCCGCCTCCACATCGCCGG
CCTGTCGGGCGGCATTCCGCTGGCGGCACAGATACGGCGAGTTGGTGGGT
GAGGGCAGTTGGTTCAATTTGTTGTTGTTTTGGCAGCACGTGGCCTTGAC
ACATCCTTCTTCCGTGGTAGGACAATCCAACGCGCAGCAGTCGGAGCCGC
TGATGTTGATGCTGGAGGTGCCATCGGACATGTTGCAGCCTTCGATCTCG
CTGAACTCTGGCTGAATGGTGGTAGAGTGGATACCCTCGTTGTGGAAGAA
CTCCTTCACCTTTTCGGCAATCTTCATGTACTCCGAAAGGTTACGGCACC
TAATATGGGCAGAGGCGATGATGCGGTCGCCGGCCAGTTGCCACACATGG
AACTCGTGCACAGCCAGCACGCCATCAACTTTCTCCAGAAGCCTCTTCTG
AATGGCATCCACCTGGATGTGGGTGGGCACCGTTTGGAGCAGAATTAAAG
CGGACTCGCGCAGCAGCGGCCACACGGAGTGCAGGATCAAAACAACCAAA
ACGATGGACAGAGCGGGATCCATGTAGTACCGGTACTTCCACTCCGTCTT
CCACACCACCACAGCACTGATTACGACAATGATGCTGCCAAGGGCATCGC
TCAAAACGTGCAAGAAGGCGCCGCGCATATTCATCTGGCCGGGATCATGG
CTGTGTCCATGGCTGGATTTCTTGACCGGTGCCTTTTCCTTCTGCTTCTC
GTANGCAAAGTCGTTTTGCTCATCCTCGCCCTCGTCCATGT

BS07890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17723-PA 1350 CG17723-RA 476..1350 891..17 4356 99.8 Minus
CG17723-PB 1350 CG17723-RB 476..1350 891..17 4356 99.8 Minus
CG17723-PC 1350 CG17723-RC 476..1350 891..17 4356 99.8 Minus
CG17723-PD 1350 CG17723-RD 476..1350 891..17 4356 99.8 Minus
CG17723-PE 1350 CG17723-RE 476..1350 891..17 4356 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1959 CG17723-RG 621..1495 891..17 4364 99.9 Minus
ZnT63C-RF 2033 CG17723-RF 695..1569 891..17 4364 99.9 Minus
ZnT63C-RE 1955 CG17723-RE 617..1491 891..17 4364 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3311961..3312405 891..447 2214 99.8 Minus
3L 28110227 3L 3312512..3312749 452..215 1190 100 Minus
3L 28110227 3L 3312814..3313012 215..17 995 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:02:19 has no hits.

BS07890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:04 Download gff for BS07890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PA 476..1350 17..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:15 Download gff for BS07890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PE 476..1350 17..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:33:03 Download gff for BS07890.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 617..1491 17..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:10 Download gff for BS07890.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 617..1491 17..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:10 Download gff for BS07890.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3311961..3312402 450..891 99 -> Minus
3L 3312515..3312749 215..449 100 -> Minus
3L 3312815..3313012 17..214 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:33:03 Download gff for BS07890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3311961..3312402 450..891 99 -> Minus
arm_3L 3312515..3312749 215..449 100 -> Minus
arm_3L 3312815..3313012 17..214 100   Minus

BS07890.5prime Sequence

890 bp (833 high quality bases) assembled on 2006-01-06

> BS07890.5prime
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGAG
AAAGTTGATGGCGTGCTGGCTGTGCACGAGTTCCATGTGT

BS07890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17723-PA 1350 CG17723-RA 1..874 17..890 4345 99.8 Plus
CG17723-PB 1350 CG17723-RB 1..874 17..890 4345 99.8 Plus
CG17723-PC 1350 CG17723-RC 1..874 17..890 4345 99.8 Plus
CG17723-PD 1350 CG17723-RD 1..874 17..890 4345 99.8 Plus
CG17723-PE 1350 CG17723-RE 1..874 17..890 4345 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1959 CG17723-RG 146..1019 17..890 4355 99.9 Plus
ZnT63C-RF 2033 CG17723-RF 220..1093 17..890 4355 99.9 Plus
ZnT63C-RE 1955 CG17723-RE 142..1015 17..890 4355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3311885..3312359 416..890 2375 100 Plus
3L 28110227 3L 3310530..3310706 17..193 885 100 Plus
3L 28110227 3L 3310770..3310896 192..318 620 99.2 Plus
3L 28110227 3L 3311728..3311827 317..416 500 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:44:14 has no hits.

BS07890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:05 Download gff for BS07890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:17 Download gff for BS07890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PE 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:49 Download gff for BS07890.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..1015 17..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:38 Download gff for BS07890.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..1015 17..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:38 Download gff for BS07890.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3310530..3310706 17..193 100 -> Plus
3L 3310772..3310896 194..318 99 -> Plus
3L 3311730..3311827 319..416 100 -> Plus
3L 3311886..3312359 417..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:49 Download gff for BS07890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3310530..3310706 17..193 100 -> Plus
arm_3L 3310772..3310896 194..318 99 -> Plus
arm_3L 3311730..3311827 319..416 100 -> Plus
arm_3L 3311886..3312359 417..890 100   Plus

BS07890.complete Sequence

1382 bp (1382 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636026

> BS07890.complete
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGAG
AAAGTTGATGGCGTGCTGGCTGTGCACGAGTTCCATGTGTGGCAACTGGC
CGGCGACCGCATCATCGCCTCTGCCCATATTAGGTGCCGTAACCTTTCGG
AGTACATGAAGATTGCCGAAAAGGTGAAGGAGTTCTTCCACAACGAGGGT
ATCCACTCTACCACCATTCAGCCAGAGTTCAGCGAGATCGAAGGCTGCAA
CATGTCCGATGGCACCTCCAGCATCAACATCAGCGGCTCCGACTGCTGCG
CGTTGGATTGTCCTACCACGGAAGAAGGATGTGTCAAGGCCACGTGCTGC
CAAAACAACAACAAATTGAACCAACTGCCCTCACCCACCAACTCGCCGTA
TCTGTGCCGCCAGCGGAATGCCGCCCGACAGGCCGGCGATGTGGAGGCGG
GTTCCCTGCTGGAGGCCACGTCCAGTGGCAACCAGGGAGCCACTGGTGGG
GCCAGCACAGGAGCGCCCGTGGCTGCGATAGGGGCCACGTCAACGCCGAA
GAGCGATTTGGTTTGAAAGCTTTCTAGACCAT

BS07890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1350 CG17723-PG 1..1350 17..1366 6735 99.9 Plus
ZnT63C-RF 1638 CG17723-PF 1..1350 17..1366 6735 99.9 Plus
ZnT63C-RE 1350 CG17723-PE 1..1350 17..1366 6735 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1959 CG17723-RG 146..1495 17..1366 6735 99.9 Plus
ZnT63C-RF 2033 CG17723-RF 220..1569 17..1366 6735 99.9 Plus
ZnT63C-RE 1955 CG17723-RE 142..1491 17..1366 6735 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3311885..3312405 416..936 2605 100 Plus
3L 28110227 3L 3312512..3312749 931..1168 1190 100 Plus
3L 28110227 3L 3312814..3313012 1168..1366 995 100 Plus
3L 28110227 3L 3310530..3310706 17..193 885 100 Plus
3L 28110227 3L 3310770..3310896 192..318 620 99.2 Plus
3L 28110227 3L 3311728..3311827 317..416 500 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:06:46 has no hits.

BS07890.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:17 Download gff for BS07890.complete
Subject Subject Range Query Range Percent Splice Strand
CG17723-RC 1..1350 17..1366 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:42 Download gff for BS07890.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RC 375..1724 17..1366 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:36 Download gff for BS07890.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..1490 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:17 Download gff for BS07890.complete
Subject Subject Range Query Range Percent Splice Strand
CG17723-RC 375..1724 17..1366 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:29 Download gff for BS07890.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..1490 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:29 Download gff for BS07890.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3311730..3311827 319..416 100 -> Plus
3L 3310530..3310706 17..193 100 -> Plus
3L 3310772..3310896 194..318 99 -> Plus
3L 3311886..3312402 417..933 100 -> Plus
3L 3312515..3312749 934..1168 100 -> Plus
3L 3312815..3313011 1169..1365 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:36 Download gff for BS07890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3310530..3310706 17..193 100 -> Plus
arm_3L 3310772..3310896 194..318 99 -> Plus
arm_3L 3311730..3311827 319..416 100 -> Plus
arm_3L 3311886..3312402 417..933 100 -> Plus
arm_3L 3312515..3312749 934..1168 100 -> Plus
arm_3L 3312815..3313011 1169..1365 100   Plus

BS07890.pep Sequence

Translation from 16 to 1365

> BS07890.pep
MAKYSGKKCRLLSMMWLTAFFFFVEIIVGYVTNSMALVADSFHMLGDIAA
LVISFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITIEACK
RFIEEEPIHEPELLVIVGALGLLVNVIGLCLLYEHGGHHGHSHGGGLTRN
HSRLTELANMDEGEDEQNDFAYEKQKEKAPVKKSSHGHSHDPGQMNMRGA
FLHVLSDALGSIIVVISAVVVWKTEWKYRYYMDPALSIVLVVLILHSVWP
LLRESALILLQTVPTHIQVDAIQKRLLEKVDGVLAVHEFHVWQLAGDRII
ASAHIRCRNLSEYMKIAEKVKEFFHNEGIHSTTIQPEFSEIEGCNMSDGT
SSINISGSDCCALDCPTTEEGCVKATCCQNNNKLNQLPSPTNSPYLCRQR
NAARQAGDVEAGSLLEATSSGNQGATGGASTGAPVAAIGATSTPKSDLV*

BS07890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-PG 449 CG17723-PG 1..449 1..449 2342 100 Plus
ZnT63C-PF 545 CG17723-PF 1..449 1..449 2342 100 Plus
ZnT63C-PE 449 CG17723-PE 1..449 1..449 2342 100 Plus
ZnT63C-PD 449 CG17723-PD 1..449 1..449 2342 100 Plus
ZnT63C-PC 449 CG17723-PC 1..449 1..449 2342 100 Plus