Clone Sequence Records
BS07890.3prime Sequence
891 bp (762 high quality bases) assembled on 2006-01-06
> BS07890.3prime
ATGGTCTAGAAAGCTTTCAAACCAAATCGCTCTTCGGCGTTGACGTGGCC
CCTATCGCAGCCACGGGCGCTCCTGTGCTGGCCCCACCAGTGGCTCCCTG
GTTGCCACTGGACGTGGCCTCCAGCAGGGAACCCGCCTCCACATCGCCGG
CCTGTCGGGCGGCATTCCGCTGGCGGCACAGATACGGCGAGTTGGTGGGT
GAGGGCAGTTGGTTCAATTTGTTGTTGTTTTGGCAGCACGTGGCCTTGAC
ACATCCTTCTTCCGTGGTAGGACAATCCAACGCGCAGCAGTCGGAGCCGC
TGATGTTGATGCTGGAGGTGCCATCGGACATGTTGCAGCCTTCGATCTCG
CTGAACTCTGGCTGAATGGTGGTAGAGTGGATACCCTCGTTGTGGAAGAA
CTCCTTCACCTTTTCGGCAATCTTCATGTACTCCGAAAGGTTACGGCACC
TAATATGGGCAGAGGCGATGATGCGGTCGCCGGCCAGTTGCCACACATGG
AACTCGTGCACAGCCAGCACGCCATCAACTTTCTCCAGAAGCCTCTTCTG
AATGGCATCCACCTGGATGTGGGTGGGCACCGTTTGGAGCAGAATTAAAG
CGGACTCGCGCAGCAGCGGCCACACGGAGTGCAGGATCAAAACAACCAAA
ACGATGGACAGAGCGGGATCCATGTAGTACCGGTACTTCCACTCCGTCTT
CCACACCACCACAGCACTGATTACGACAATGATGCTGCCAAGGGCATCGC
TCAAAACGTGCAAGAAGGCGCCGCGCATATTCATCTGGCCGGGATCATGG
CTGTGTCCATGGCTGGATTTCTTGACCGGTGCCTTTTCCTTCTGCTTCTC
GTANGCAAAGTCGTTTTGCTCATCCTCGCCCTCGTCCATGT
BS07890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17723-PA | 1350 | CG17723-RA | 476..1350 | 891..17 | 4356 | 99.8 | Minus |
CG17723-PB | 1350 | CG17723-RB | 476..1350 | 891..17 | 4356 | 99.8 | Minus |
CG17723-PC | 1350 | CG17723-RC | 476..1350 | 891..17 | 4356 | 99.8 | Minus |
CG17723-PD | 1350 | CG17723-RD | 476..1350 | 891..17 | 4356 | 99.8 | Minus |
CG17723-PE | 1350 | CG17723-RE | 476..1350 | 891..17 | 4356 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1959 | CG17723-RG | 621..1495 | 891..17 | 4364 | 99.9 | Minus |
ZnT63C-RF | 2033 | CG17723-RF | 695..1569 | 891..17 | 4364 | 99.9 | Minus |
ZnT63C-RE | 1955 | CG17723-RE | 617..1491 | 891..17 | 4364 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3311961..3312405 | 891..447 | 2214 | 99.8 | Minus |
3L | 28110227 | 3L | 3312512..3312749 | 452..215 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 3312814..3313012 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:02:19 has no hits.
BS07890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:04 Download gff for
BS07890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PA | 476..1350 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:15 Download gff for
BS07890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PE | 476..1350 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:33:03 Download gff for
BS07890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 617..1491 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:10 Download gff for
BS07890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 617..1491 | 17..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:10 Download gff for
BS07890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3311961..3312402 | 450..891 | 99 | -> | Minus |
3L | 3312515..3312749 | 215..449 | 100 | -> | Minus |
3L | 3312815..3313012 | 17..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:33:03 Download gff for
BS07890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3311961..3312402 | 450..891 | 99 | -> | Minus |
arm_3L | 3312515..3312749 | 215..449 | 100 | -> | Minus |
arm_3L | 3312815..3313012 | 17..214 | 100 | | Minus |
BS07890.5prime Sequence
890 bp (833 high quality bases) assembled on 2006-01-06
> BS07890.5prime
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGAG
AAAGTTGATGGCGTGCTGGCTGTGCACGAGTTCCATGTGT
BS07890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17723-PA | 1350 | CG17723-RA | 1..874 | 17..890 | 4345 | 99.8 | Plus |
CG17723-PB | 1350 | CG17723-RB | 1..874 | 17..890 | 4345 | 99.8 | Plus |
CG17723-PC | 1350 | CG17723-RC | 1..874 | 17..890 | 4345 | 99.8 | Plus |
CG17723-PD | 1350 | CG17723-RD | 1..874 | 17..890 | 4345 | 99.8 | Plus |
CG17723-PE | 1350 | CG17723-RE | 1..874 | 17..890 | 4345 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1959 | CG17723-RG | 146..1019 | 17..890 | 4355 | 99.9 | Plus |
ZnT63C-RF | 2033 | CG17723-RF | 220..1093 | 17..890 | 4355 | 99.9 | Plus |
ZnT63C-RE | 1955 | CG17723-RE | 142..1015 | 17..890 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3311885..3312359 | 416..890 | 2375 | 100 | Plus |
3L | 28110227 | 3L | 3310530..3310706 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 3310770..3310896 | 192..318 | 620 | 99.2 | Plus |
3L | 28110227 | 3L | 3311728..3311827 | 317..416 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:44:14 has no hits.
BS07890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:05 Download gff for
BS07890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:17 Download gff for
BS07890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PE | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:49 Download gff for
BS07890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..1015 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:38 Download gff for
BS07890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..1015 | 17..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:38 Download gff for
BS07890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
3L | 3311886..3312359 | 417..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:49 Download gff for
BS07890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
arm_3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
arm_3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
arm_3L | 3311886..3312359 | 417..890 | 100 | | Plus |
BS07890.complete Sequence
1382 bp (1382 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636026
> BS07890.complete
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGAG
AAAGTTGATGGCGTGCTGGCTGTGCACGAGTTCCATGTGTGGCAACTGGC
CGGCGACCGCATCATCGCCTCTGCCCATATTAGGTGCCGTAACCTTTCGG
AGTACATGAAGATTGCCGAAAAGGTGAAGGAGTTCTTCCACAACGAGGGT
ATCCACTCTACCACCATTCAGCCAGAGTTCAGCGAGATCGAAGGCTGCAA
CATGTCCGATGGCACCTCCAGCATCAACATCAGCGGCTCCGACTGCTGCG
CGTTGGATTGTCCTACCACGGAAGAAGGATGTGTCAAGGCCACGTGCTGC
CAAAACAACAACAAATTGAACCAACTGCCCTCACCCACCAACTCGCCGTA
TCTGTGCCGCCAGCGGAATGCCGCCCGACAGGCCGGCGATGTGGAGGCGG
GTTCCCTGCTGGAGGCCACGTCCAGTGGCAACCAGGGAGCCACTGGTGGG
GCCAGCACAGGAGCGCCCGTGGCTGCGATAGGGGCCACGTCAACGCCGAA
GAGCGATTTGGTTTGAAAGCTTTCTAGACCAT
BS07890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1350 | CG17723-PG | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
ZnT63C-RF | 1638 | CG17723-PF | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
ZnT63C-RE | 1350 | CG17723-PE | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1959 | CG17723-RG | 146..1495 | 17..1366 | 6735 | 99.9 | Plus |
ZnT63C-RF | 2033 | CG17723-RF | 220..1569 | 17..1366 | 6735 | 99.9 | Plus |
ZnT63C-RE | 1955 | CG17723-RE | 142..1491 | 17..1366 | 6735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3311885..3312405 | 416..936 | 2605 | 100 | Plus |
3L | 28110227 | 3L | 3312512..3312749 | 931..1168 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 3312814..3313012 | 1168..1366 | 995 | 100 | Plus |
3L | 28110227 | 3L | 3310530..3310706 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 3310770..3310896 | 192..318 | 620 | 99.2 | Plus |
3L | 28110227 | 3L | 3311728..3311827 | 317..416 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:46 has no hits.
BS07890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:17 Download gff for
BS07890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-RC | 1..1350 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:42 Download gff for
BS07890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RC | 375..1724 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:36 Download gff for
BS07890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..1490 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:17 Download gff for
BS07890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-RC | 375..1724 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:29 Download gff for
BS07890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..1490 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:29 Download gff for
BS07890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
3L | 3311886..3312402 | 417..933 | 100 | -> | Plus |
3L | 3312515..3312749 | 934..1168 | 100 | -> | Plus |
3L | 3312815..3313011 | 1169..1365 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:36 Download gff for
BS07890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
arm_3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
arm_3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
arm_3L | 3311886..3312402 | 417..933 | 100 | -> | Plus |
arm_3L | 3312515..3312749 | 934..1168 | 100 | -> | Plus |
arm_3L | 3312815..3313011 | 1169..1365 | 100 | | Plus |
BS07890.pep Sequence
Translation from 16 to 1365
> BS07890.pep
MAKYSGKKCRLLSMMWLTAFFFFVEIIVGYVTNSMALVADSFHMLGDIAA
LVISFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITIEACK
RFIEEEPIHEPELLVIVGALGLLVNVIGLCLLYEHGGHHGHSHGGGLTRN
HSRLTELANMDEGEDEQNDFAYEKQKEKAPVKKSSHGHSHDPGQMNMRGA
FLHVLSDALGSIIVVISAVVVWKTEWKYRYYMDPALSIVLVVLILHSVWP
LLRESALILLQTVPTHIQVDAIQKRLLEKVDGVLAVHEFHVWQLAGDRII
ASAHIRCRNLSEYMKIAEKVKEFFHNEGIHSTTIQPEFSEIEGCNMSDGT
SSINISGSDCCALDCPTTEEGCVKATCCQNNNKLNQLPSPTNSPYLCRQR
NAARQAGDVEAGSLLEATSSGNQGATGGASTGAPVAAIGATSTPKSDLV*
BS07890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-PG | 449 | CG17723-PG | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PF | 545 | CG17723-PF | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PE | 449 | CG17723-PE | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PD | 449 | CG17723-PD | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PC | 449 | CG17723-PC | 1..449 | 1..449 | 2342 | 100 | Plus |