Clone BS07893 Report

Search the DGRC for BS07893

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptpasha-RA
Protein status:BS07893.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07893.3prime Sequence

930 bp (830 high quality bases) assembled on 2006-01-06

> BS07893.3prime
ATGGTCTAGAAAGCTTTCAAAGTTCCACGTTGTTCAAATTGGACCCGGAG
GAAGTGGGCAGATCGACGTCGCTTGGCGGCACAAAAGTGCCCATGGTTAG
GACGCTCTCCTGCTTGGCACACAGTTTCAACATCTCGGATTTAAGTTTGT
CCAGTATGGCGTAGTTGGGTTGGTTGACTGCCGCCTTGCTCTGCAGCACG
GTGATCTCCTGCTCCTCCAGCTTCTTCTCCTTGAAGGTCTTTATGGAGTT
GTTGCCGTAGAGGCGCAACAAGGAACCCCAGGTCTGGATGTGCGGATGCA
AAATCTGGAGGATTGCTTGCGAAGCCAACTGCTTGCCCTCCCGCTTGTTT
TTACACACCACTTTGGCAGTATGTTTGCCCACGGTCATGGTAAACTCGTT
CTTGTTATTCGCGGTGCGGTTGATCTCCTGGCTGATCTGAACATCGCTGC
CGTAGTTGCGCTGCAAGCAAGTCAGCAGAATGGCGTTGGGAGATGGCTCC
GTCGTCTTGTTGCAGAATTCGGTGACTCGGGGATCTTCGATGCGGATGTC
ATCGAAAACAGACAGATCGCTCTGCGCTTTCTTCGCAGTGCCGCTCTTTT
GGTCCTTATTGTTGCCCGTTATCTTGTCCTTGACATCGGGAATGAGTATT
TCCAGCGTTTCCCGAGCCGCCTCTGACTTGGCCTGCTTTTTACTGGTGCC
ATAGCCCGTGCCATACTTGAGATTGTTCACCGATACGGTGGCGGAGTAAG
GCGTGGCTGCGTTTTGGAGCTCCTTGAACTCATAGGTGGGCTGCGTTTTC
AGAGCATGCTGCACGTACTCGTGCAGGATGCAGACGAAGCTCTTGCCATT
GGGATTCATGATCCACTCCTTCCGACCGCGCGGGTTCGTTGATCCTTTCG
CAGCATTCGCTAGTATTGGGAACTTAATAG

BS07893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1800-PA 1929 pasha-RA 1049..1929 897..17 4405 100 Minus
CG1800-PA 1929 pasha-RA 1017..1045 929..901 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 2579 CG1800-RC 1127..2039 929..17 4520 99.8 Minus
pasha-RB 2123 CG1800-RB 854..1766 929..17 4520 99.8 Minus
pasha-RA 2847 CG1800-RA 1578..2490 929..17 4520 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31620090..31620461 929..558 1815 99.2 Minus
3R 32079331 3R 31620827..31621117 307..17 1455 100 Minus
3R 32079331 3R 31620516..31620770 559..305 1275 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:10:53 has no hits.

BS07893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:10 Download gff for BS07893.3prime
Subject Subject Range Query Range Percent Splice Strand
pasha-PA 1015..1929 17..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:24 Download gff for BS07893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1800-PA 1015..1929 17..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:41:33 Download gff for BS07893.3prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1576..2490 17..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:05 Download gff for BS07893.3prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1576..2490 17..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:05 Download gff for BS07893.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31620088..31620459 560..930 99 -> Minus
3R 31620516..31620770 305..559 100 -> Minus
3R 31620830..31621117 17..304 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:41:33 Download gff for BS07893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27445810..27446181 560..930 99 -> Minus
arm_3R 27446238..27446492 305..559 100 -> Minus
arm_3R 27446552..27446839 17..304 100   Minus

BS07893.5prime Sequence

843 bp (772 high quality bases) assembled on 2006-01-06

> BS07893.5prime
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATGTTACG

BS07893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1800-PA 1929 pasha-RA 1..821 17..837 4105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 2579 CG1800-RC 111..938 17..843 4115 99.9 Plus
pasha-RA 2847 CG1800-RA 562..1389 17..843 4115 99.9 Plus
pasha-RB 2123 CG1800-RB 65..665 244..843 2980 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31619508..31619894 451..837 1935 100 Plus
3R 32079331 3R 31618538..31618769 17..248 1160 100 Plus
3R 32079331 3R 31619238..31619444 246..452 1035 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:41:50 has no hits.

BS07893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:11 Download gff for BS07893.5prime
Subject Subject Range Query Range Percent Splice Strand
pasha-PA 1..828 17..843 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:25 Download gff for BS07893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1800-PA 1..828 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:24 Download gff for BS07893.5prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 555..1389 9..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:22 Download gff for BS07893.5prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 555..1389 9..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:22 Download gff for BS07893.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31618531..31618769 9..248 98 -> Plus
3R 31619241..31619444 249..452 100 -> Plus
3R 31619510..31619901 453..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:24 Download gff for BS07893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27444253..27444491 9..248 98 -> Plus
arm_3R 27444963..27445166 249..452 100 -> Plus
arm_3R 27445232..27445623 453..843 99   Plus

BS07893.complete Sequence

1961 bp assembled on 2008-01-03

GenBank Submission: FJ636027

> BS07893.complete
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATTGTTACGGTCAAC
GAGAATACCCAAAAGGAATCCATTACACCGGAGCAACTAAACACCTACTG
CCAGAAACTCTTCAAATTCAAGGTGATTCGTGTGCTGCGATTTCGGAGTT
GGAATGCTCGCCGCAAGTTCACCAAAAACCGCAAACACATCAAGAATATT
CAACGACCCACGCTGCCGGATGGCACTAAGCTTATTAAGTTCCCAATACT
AGCGAATGCTGGCGAAGGATCAACGAACCCGCGCGGTCGGAAGGAGTGGA
TCATGAATCCCAATGGCAAGAGCTTCGTCTGCATCCTGCACGAGTACGTG
CAGCATGCTCTGAAAACGCAGCCCACCTATGAGTTCAAGGAGCTCCAAAA
CGCAGCCACGCCTTACTCCGCCACCGTATCGGTGAACAATCTCAAGTATG
GCACGGGCTATGGCACCAGTAAAAAGCAGGCCAAGTCAGAGGCGGCTCGG
GAAACGCTGGAAATACTCATTCCCGATGTCAAGGACAAGATAACGGGCAA
CAATAAGGACCAAAAGAGCGGCACTGCGAAGAAAGCGCAGAGCGATCTGT
CTGTTTTCGATGACATCCGCATCGAAGATCCCCGAGTCACCGAATTCTGC
AACAAGACGACGGAGCCATCTCCCAACGCCATTCTGCTGACTTGCTTGCA
GCGCAACTACGGCAGCGATGTTCAGATCAGCCAGGAGATCAACCGCACCG
CGAATAACAAGAACGAGTTTACCATGACCGTGGGCAAACATACTGCCAAA
GTGGTGTGTAAAAACAAGCGGGAGGGCAAGCAGTTGGCTTCGCAAGCAAT
CCTCCAGATTTTGCATCCGCACATCCAGACCTGGGGTTCCTTGTTGCGCC
TCTACGGCAACAACTCCATAAAGACCTTCAAGGAGAAGAAGCTGGAGGAG
CAGGAGATCACCGTGCTGCAGAGCAAGGCGGCAGTCAACCAACCCAACTA
CGCCATACTGGACAAACTTAAATCCGAGATGTTGAAACTGTGTGCCAAGC
AGGAGAGCGTCCTAACCATGGGCACTTTTGTGCCGCCAAGCGACGTCGAT
CTGCCCACTTCCTCCGGGTCCAATTTGAACAACGTGGAACTTTGAAAGCT
TTCTAGACCAT

BS07893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 1929 CG1800-PC 1..1929 17..1945 9645 100 Plus
pasha-RA 1929 CG1800-PA 1..1929 17..1945 9645 100 Plus
pasha-RB 1743 CG1800-PB 42..1743 244..1945 8510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 2579 CG1800-RC 111..2039 17..1945 9645 100 Plus
pasha-RA 2847 CG1800-RA 562..2490 17..1945 9645 100 Plus
pasha-RB 2123 CG1800-RB 65..1766 244..1945 8510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31619508..31620461 451..1404 4770 100 Plus
3R 32079331 3R 31620827..31621117 1655..1945 1455 100 Plus
3R 32079331 3R 31620516..31620770 1403..1657 1275 100 Plus
3R 32079331 3R 31618538..31618769 17..248 1160 100 Plus
3R 32079331 3R 31619238..31619444 246..452 1035 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:39:04 has no hits.

BS07893.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:30 Download gff for BS07893.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1..1929 17..1945 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:01 Download gff for BS07893.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 562..2489 17..1944 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:22 Download gff for BS07893.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 562..2489 17..1944 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:30 Download gff for BS07893.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 555..2490 9..1945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:54 Download gff for BS07893.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 562..2489 17..1944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:54 Download gff for BS07893.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31620516..31620770 1403..1657 100 -> Plus
3R 31618538..31618769 17..248 100 -> Plus
3R 31619241..31619444 249..452 100 -> Plus
3R 31619510..31620459 453..1402 100 -> Plus
3R 31620830..31621116 1658..1944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:22 Download gff for BS07893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27444260..27444491 17..248 100 -> Plus
arm_3R 27444963..27445166 249..452 100 -> Plus
arm_3R 27445232..27446181 453..1402 100 -> Plus
arm_3R 27446238..27446492 1403..1657 100 -> Plus
arm_3R 27446552..27446838 1658..1944 100   Plus

BS07893.pep Sequence

Translation from 16 to 1944

> BS07893.pep
MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ
NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD
GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN
HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG
AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE
NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK
FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE
GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY
SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK
SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS
DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH
PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK
LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVEL*

BS07893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-PC 642 CG1800-PC 1..642 1..642 3334 100 Plus
pasha-PA 642 CG1800-PA 1..642 1..642 3334 100 Plus
pasha-PB 580 CG1800-PB 15..580 77..642 2946 100 Plus