Clone Sequence Records
BS07893.3prime Sequence
930 bp (830 high quality bases) assembled on 2006-01-06
> BS07893.3prime
ATGGTCTAGAAAGCTTTCAAAGTTCCACGTTGTTCAAATTGGACCCGGAG
GAAGTGGGCAGATCGACGTCGCTTGGCGGCACAAAAGTGCCCATGGTTAG
GACGCTCTCCTGCTTGGCACACAGTTTCAACATCTCGGATTTAAGTTTGT
CCAGTATGGCGTAGTTGGGTTGGTTGACTGCCGCCTTGCTCTGCAGCACG
GTGATCTCCTGCTCCTCCAGCTTCTTCTCCTTGAAGGTCTTTATGGAGTT
GTTGCCGTAGAGGCGCAACAAGGAACCCCAGGTCTGGATGTGCGGATGCA
AAATCTGGAGGATTGCTTGCGAAGCCAACTGCTTGCCCTCCCGCTTGTTT
TTACACACCACTTTGGCAGTATGTTTGCCCACGGTCATGGTAAACTCGTT
CTTGTTATTCGCGGTGCGGTTGATCTCCTGGCTGATCTGAACATCGCTGC
CGTAGTTGCGCTGCAAGCAAGTCAGCAGAATGGCGTTGGGAGATGGCTCC
GTCGTCTTGTTGCAGAATTCGGTGACTCGGGGATCTTCGATGCGGATGTC
ATCGAAAACAGACAGATCGCTCTGCGCTTTCTTCGCAGTGCCGCTCTTTT
GGTCCTTATTGTTGCCCGTTATCTTGTCCTTGACATCGGGAATGAGTATT
TCCAGCGTTTCCCGAGCCGCCTCTGACTTGGCCTGCTTTTTACTGGTGCC
ATAGCCCGTGCCATACTTGAGATTGTTCACCGATACGGTGGCGGAGTAAG
GCGTGGCTGCGTTTTGGAGCTCCTTGAACTCATAGGTGGGCTGCGTTTTC
AGAGCATGCTGCACGTACTCGTGCAGGATGCAGACGAAGCTCTTGCCATT
GGGATTCATGATCCACTCCTTCCGACCGCGCGGGTTCGTTGATCCTTTCG
CAGCATTCGCTAGTATTGGGAACTTAATAG
BS07893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1800-PA | 1929 | pasha-RA | 1049..1929 | 897..17 | 4405 | 100 | Minus |
CG1800-PA | 1929 | pasha-RA | 1017..1045 | 929..901 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 2579 | CG1800-RC | 1127..2039 | 929..17 | 4520 | 99.8 | Minus |
pasha-RB | 2123 | CG1800-RB | 854..1766 | 929..17 | 4520 | 99.8 | Minus |
pasha-RA | 2847 | CG1800-RA | 1578..2490 | 929..17 | 4520 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31620090..31620461 | 929..558 | 1815 | 99.2 | Minus |
3R | 32079331 | 3R | 31620827..31621117 | 307..17 | 1455 | 100 | Minus |
3R | 32079331 | 3R | 31620516..31620770 | 559..305 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:10:53 has no hits.
BS07893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:10 Download gff for
BS07893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-PA | 1015..1929 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:24 Download gff for
BS07893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1800-PA | 1015..1929 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:41:33 Download gff for
BS07893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 1576..2490 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:50:05 Download gff for
BS07893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 1576..2490 | 17..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:50:05 Download gff for
BS07893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31620088..31620459 | 560..930 | 99 | -> | Minus |
3R | 31620516..31620770 | 305..559 | 100 | -> | Minus |
3R | 31620830..31621117 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:41:33 Download gff for
BS07893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27445810..27446181 | 560..930 | 99 | -> | Minus |
arm_3R | 27446238..27446492 | 305..559 | 100 | -> | Minus |
arm_3R | 27446552..27446839 | 17..304 | 100 | | Minus |
BS07893.5prime Sequence
843 bp (772 high quality bases) assembled on 2006-01-06
> BS07893.5prime
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATGTTACG
BS07893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1800-PA | 1929 | pasha-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 2579 | CG1800-RC | 111..938 | 17..843 | 4115 | 99.9 | Plus |
pasha-RA | 2847 | CG1800-RA | 562..1389 | 17..843 | 4115 | 99.9 | Plus |
pasha-RB | 2123 | CG1800-RB | 65..665 | 244..843 | 2980 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31619508..31619894 | 451..837 | 1935 | 100 | Plus |
3R | 32079331 | 3R | 31618538..31618769 | 17..248 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 31619238..31619444 | 246..452 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:41:50 has no hits.
BS07893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:11 Download gff for
BS07893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-PA | 1..828 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:25 Download gff for
BS07893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1800-PA | 1..828 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:24 Download gff for
BS07893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 555..1389 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:22 Download gff for
BS07893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 555..1389 | 9..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:22 Download gff for
BS07893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31618531..31618769 | 9..248 | 98 | -> | Plus |
3R | 31619241..31619444 | 249..452 | 100 | -> | Plus |
3R | 31619510..31619901 | 453..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:24 Download gff for
BS07893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27444253..27444491 | 9..248 | 98 | -> | Plus |
arm_3R | 27444963..27445166 | 249..452 | 100 | -> | Plus |
arm_3R | 27445232..27445623 | 453..843 | 99 | | Plus |
BS07893.complete Sequence
1961 bp assembled on 2008-01-03
GenBank Submission: FJ636027
> BS07893.complete
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATTGTTACGGTCAAC
GAGAATACCCAAAAGGAATCCATTACACCGGAGCAACTAAACACCTACTG
CCAGAAACTCTTCAAATTCAAGGTGATTCGTGTGCTGCGATTTCGGAGTT
GGAATGCTCGCCGCAAGTTCACCAAAAACCGCAAACACATCAAGAATATT
CAACGACCCACGCTGCCGGATGGCACTAAGCTTATTAAGTTCCCAATACT
AGCGAATGCTGGCGAAGGATCAACGAACCCGCGCGGTCGGAAGGAGTGGA
TCATGAATCCCAATGGCAAGAGCTTCGTCTGCATCCTGCACGAGTACGTG
CAGCATGCTCTGAAAACGCAGCCCACCTATGAGTTCAAGGAGCTCCAAAA
CGCAGCCACGCCTTACTCCGCCACCGTATCGGTGAACAATCTCAAGTATG
GCACGGGCTATGGCACCAGTAAAAAGCAGGCCAAGTCAGAGGCGGCTCGG
GAAACGCTGGAAATACTCATTCCCGATGTCAAGGACAAGATAACGGGCAA
CAATAAGGACCAAAAGAGCGGCACTGCGAAGAAAGCGCAGAGCGATCTGT
CTGTTTTCGATGACATCCGCATCGAAGATCCCCGAGTCACCGAATTCTGC
AACAAGACGACGGAGCCATCTCCCAACGCCATTCTGCTGACTTGCTTGCA
GCGCAACTACGGCAGCGATGTTCAGATCAGCCAGGAGATCAACCGCACCG
CGAATAACAAGAACGAGTTTACCATGACCGTGGGCAAACATACTGCCAAA
GTGGTGTGTAAAAACAAGCGGGAGGGCAAGCAGTTGGCTTCGCAAGCAAT
CCTCCAGATTTTGCATCCGCACATCCAGACCTGGGGTTCCTTGTTGCGCC
TCTACGGCAACAACTCCATAAAGACCTTCAAGGAGAAGAAGCTGGAGGAG
CAGGAGATCACCGTGCTGCAGAGCAAGGCGGCAGTCAACCAACCCAACTA
CGCCATACTGGACAAACTTAAATCCGAGATGTTGAAACTGTGTGCCAAGC
AGGAGAGCGTCCTAACCATGGGCACTTTTGTGCCGCCAAGCGACGTCGAT
CTGCCCACTTCCTCCGGGTCCAATTTGAACAACGTGGAACTTTGAAAGCT
TTCTAGACCAT
BS07893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 1929 | CG1800-PC | 1..1929 | 17..1945 | 9645 | 100 | Plus |
pasha-RA | 1929 | CG1800-PA | 1..1929 | 17..1945 | 9645 | 100 | Plus |
pasha-RB | 1743 | CG1800-PB | 42..1743 | 244..1945 | 8510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 2579 | CG1800-RC | 111..2039 | 17..1945 | 9645 | 100 | Plus |
pasha-RA | 2847 | CG1800-RA | 562..2490 | 17..1945 | 9645 | 100 | Plus |
pasha-RB | 2123 | CG1800-RB | 65..1766 | 244..1945 | 8510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31619508..31620461 | 451..1404 | 4770 | 100 | Plus |
3R | 32079331 | 3R | 31620827..31621117 | 1655..1945 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 31620516..31620770 | 1403..1657 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 31618538..31618769 | 17..248 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 31619238..31619444 | 246..452 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:39:04 has no hits.
BS07893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:30 Download gff for
BS07893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 1..1929 | 17..1945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:01 Download gff for
BS07893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 562..2489 | 17..1944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:22 Download gff for
BS07893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 562..2489 | 17..1944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:30 Download gff for
BS07893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 555..2490 | 9..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:54 Download gff for
BS07893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 562..2489 | 17..1944 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:54 Download gff for
BS07893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31620516..31620770 | 1403..1657 | 100 | -> | Plus |
3R | 31618538..31618769 | 17..248 | 100 | -> | Plus |
3R | 31619241..31619444 | 249..452 | 100 | -> | Plus |
3R | 31619510..31620459 | 453..1402 | 100 | -> | Plus |
3R | 31620830..31621116 | 1658..1944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:22 Download gff for
BS07893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27444260..27444491 | 17..248 | 100 | -> | Plus |
arm_3R | 27444963..27445166 | 249..452 | 100 | -> | Plus |
arm_3R | 27445232..27446181 | 453..1402 | 100 | -> | Plus |
arm_3R | 27446238..27446492 | 1403..1657 | 100 | -> | Plus |
arm_3R | 27446552..27446838 | 1658..1944 | 100 | | Plus |
BS07893.pep Sequence
Translation from 16 to 1944
> BS07893.pep
MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ
NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD
GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN
HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG
AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE
NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK
FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE
GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY
SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK
SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS
DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH
PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK
LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVEL*
BS07893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-PC | 642 | CG1800-PC | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PA | 642 | CG1800-PA | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PB | 580 | CG1800-PB | 15..580 | 77..642 | 2946 | 100 | Plus |