Clone Sequence Records
BS07913.3prime Sequence
928 bp (812 high quality bases) assembled on 2006-01-06
> BS07913.3prime
ATGGTCTAGAAAGCTTTTACGTGCATATTTCGCTGCTGGTGGCGCAGGAA
TTACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAAC
CGGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGG
AGTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTC
TTGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGC
ATCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCA
CTTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAAC
TTGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAG
AATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGG
CCGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAG
TGAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCT
GATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGAT
ACACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCC
GGCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGATCTTGTCACC
GCGCACCGCGGGTGCATCGGGCGTCTGGTTGGTCACCACTTGGCCATCCT
GGAAGGCTCCTGCGTTGTACATGCTTCGAACCTCGTTGAGGATCTTCAGG
CCCGTCTCCATCCCCAGGAAGTCGTCCACCACGGACAGACCATACTGGTT
CATGTCGCTGATGATGTTACGGCACAGATCCTCATAGCGGCGCTCACGCT
TGTCCAAAAGTTCCCGAAAGTACTGCTC
BS07913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PA | 978 | Hph-RA | 67..978 | 928..17 | 4560 | 100 | Minus |
CG31543-PC | 1437 | Hph-RC | 557..1437 | 897..17 | 4405 | 100 | Minus |
CG31543-PB | 837 | Hph-RB | 1..837 | 853..17 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 2337 | CG44015-RA | 668..1579 | 928..17 | 4560 | 100 | Minus |
Hph-RD | 3171 | CG44015-RD | 1085..1965 | 897..17 | 4405 | 100 | Minus |
Hph-RC | 2496 | CG44015-RC | 1085..1965 | 897..17 | 4405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267840 | 396..17 | 1900 | 100 | Minus |
3R | 32079331 | 3R | 5266752..5267032 | 897..617 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 5267262..5267402 | 536..396 | 705 | 100 | Minus |
3R | 32079331 | 3R | 5267117..5267202 | 620..535 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:39:21 has no hits.
BS07913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:36 Download gff for
BS07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PA | 67..978 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:57 Download gff for
BS07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PA | 67..978 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:44:27 Download gff for
BS07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 668..1579 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:44 Download gff for
BS07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 668..1579 | 17..928 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:44 Download gff for
BS07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5265606..5265637 | 897..928 | 100 | -> | Minus |
3R | 5266753..5267032 | 617..896 | 100 | -> | Minus |
3R | 5267121..5267201 | 536..616 | 100 | -> | Minus |
3R | 5267263..5267402 | 396..535 | 100 | -> | Minus |
3R | 5267462..5267836 | 21..395 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:44:27 Download gff for
BS07913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1091328..1091359 | 897..928 | 100 | -> | Minus |
arm_3R | 1092475..1092754 | 617..896 | 100 | -> | Minus |
arm_3R | 1092843..1092923 | 536..616 | 100 | -> | Minus |
arm_3R | 1092985..1093124 | 396..535 | 100 | -> | Minus |
arm_3R | 1093184..1093558 | 21..395 | 100 | -> | Minus |
BS07913.5prime Sequence
926 bp (761 high quality bases) assembled on 2006-01-06
> BS07913.5prime
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCT
GAACCAGACTCCACCACCCACACACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCGGTTAGCATGTCCACGG
BS07913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PA | 978 | Hph-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG31543-PC | 1437 | Hph-RC | 557..1311 | 114..868 | 3775 | 100 | Plus |
CG31543-PB | 837 | Hph-RB | 1..711 | 158..868 | 3555 | 100 | Plus |
CG31543-PA | 978 | Hph-RA | 857..910 | 873..926 | 270 | 100 | Plus |
CG31543-PC | 1437 | Hph-RC | 1316..1369 | 873..926 | 270 | 100 | Plus |
CG31543-PB | 837 | Hph-RB | 716..769 | 873..926 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 2337 | CG44015-RA | 602..1511 | 17..926 | 4505 | 99.8 | Plus |
Hph-RD | 3171 | CG44015-RD | 1085..1897 | 114..926 | 4020 | 99.8 | Plus |
Hph-RC | 2496 | CG44015-RC | 1085..1897 | 114..926 | 4020 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267772 | 615..926 | 1500 | 98.7 | Plus |
3R | 32079331 | 3R | 5266752..5267032 | 114..394 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 475..615 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5265540..5265637 | 17..114 | 490 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 391..476 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:20:57 has no hits.
BS07913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:37 Download gff for
BS07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:58 Download gff for
BS07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:59:22 Download gff for
BS07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 591..1511 | 7..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:09 Download gff for
BS07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 591..1511 | 7..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:09 Download gff for
BS07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5265529..5265637 | 7..114 | 96 | -> | Plus |
3R | 5266753..5267032 | 115..394 | 100 | -> | Plus |
3R | 5267121..5267201 | 395..475 | 100 | -> | Plus |
3R | 5267263..5267402 | 476..615 | 100 | -> | Plus |
3R | 5267462..5267772 | 616..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:59:22 Download gff for
BS07913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1091251..1091359 | 7..114 | 96 | -> | Plus |
arm_3R | 1092475..1092754 | 115..394 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 395..475 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 476..615 | 100 | -> | Plus |
arm_3R | 1093184..1093494 | 616..926 | 99 | | Plus |
BS07913.complete Sequence
1010 bp (1010 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636028
> BS07913.complete
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCT
GAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATG
TGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACGTAAAAGCTT
TCTAGACCAT
BS07913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 978 | CG44015-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Hph-RD | 1437 | CG44015-PD | 557..1437 | 114..994 | 4405 | 100 | Plus |
Hph-RC | 1437 | CG44015-PC | 557..1437 | 114..994 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 2337 | CG44015-RA | 602..1579 | 17..994 | 4890 | 100 | Plus |
Hph-RD | 3171 | CG44015-RD | 1085..1965 | 114..994 | 4405 | 100 | Plus |
Hph-RC | 2496 | CG44015-RC | 1085..1965 | 114..994 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267840 | 615..994 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 5266752..5267032 | 114..394 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 475..615 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5265540..5265637 | 17..114 | 490 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 391..476 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:57 has no hits.
BS07913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:18 Download gff for
BS07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 1..978 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:31 Download gff for
BS07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 588..1576 | 7..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:23 Download gff for
BS07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 602..1577 | 17..992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:18 Download gff for
BS07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 588..1576 | 7..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:10 Download gff for
BS07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 602..1577 | 17..992 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:10 Download gff for
BS07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5266753..5267032 | 115..394 | 100 | -> | Plus |
3R | 5267121..5267201 | 395..475 | 100 | -> | Plus |
3R | 5267263..5267402 | 476..615 | 100 | -> | Plus |
3R | 5265540..5265637 | 17..114 | 100 | -> | Plus |
3R | 5267462..5267838 | 616..992 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:23 Download gff for
BS07913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1091262..1091359 | 17..114 | 100 | -> | Plus |
arm_3R | 1092475..1092754 | 115..394 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 395..475 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 476..615 | 100 | -> | Plus |
arm_3R | 1093184..1093560 | 616..992 | 100 | | Plus |
BS07913.pep Sequence
Translation from 16 to 993
> BS07913.pep
MITSTTTDYKNFFKHSAHPANAEQYFRELLDKRERRYEDLCRNIISDMNQ
YGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAVRGD
KIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYHIRE
RTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGGILR
IRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYFDAK
EREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSLPVS
MSTGTGALNANVSSNSCATSSEICT*
BS07913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-PA | 325 | CG44015-PA | 1..325 | 1..325 | 1719 | 100 | Plus |
Hph-PD | 478 | CG44015-PD | 187..478 | 34..325 | 1543 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 187..478 | 34..325 | 1543 | 100 | Plus |
Hph-PB | 278 | CG44015-PB | 1..278 | 48..325 | 1468 | 100 | Plus |