Clone BS07913 Report

Search the DGRC for BS07913

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptHph-RA
Protein status:BS07913.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07913.3prime Sequence

928 bp (812 high quality bases) assembled on 2006-01-06

> BS07913.3prime
ATGGTCTAGAAAGCTTTTACGTGCATATTTCGCTGCTGGTGGCGCAGGAA
TTACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAAC
CGGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGG
AGTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTC
TTGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGC
ATCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCA
CTTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAAC
TTGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAG
AATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGG
CCGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAG
TGAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCT
GATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGAT
ACACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCC
GGCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGATCTTGTCACC
GCGCACCGCGGGTGCATCGGGCGTCTGGTTGGTCACCACTTGGCCATCCT
GGAAGGCTCCTGCGTTGTACATGCTTCGAACCTCGTTGAGGATCTTCAGG
CCCGTCTCCATCCCCAGGAAGTCGTCCACCACGGACAGACCATACTGGTT
CATGTCGCTGATGATGTTACGGCACAGATCCTCATAGCGGCGCTCACGCT
TGTCCAAAAGTTCCCGAAAGTACTGCTC

BS07913.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PA 978 Hph-RA 67..978 928..17 4560 100 Minus
CG31543-PC 1437 Hph-RC 557..1437 897..17 4405 100 Minus
CG31543-PB 837 Hph-RB 1..837 853..17 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 2337 CG44015-RA 668..1579 928..17 4560 100 Minus
Hph-RD 3171 CG44015-RD 1085..1965 897..17 4405 100 Minus
Hph-RC 2496 CG44015-RC 1085..1965 897..17 4405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267840 396..17 1900 100 Minus
3R 32079331 3R 5266752..5267032 897..617 1405 100 Minus
3R 32079331 3R 5267262..5267402 536..396 705 100 Minus
3R 32079331 3R 5267117..5267202 620..535 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:39:21 has no hits.

BS07913.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:36 Download gff for BS07913.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PA 67..978 17..928 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:57 Download gff for BS07913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 67..978 17..928 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:44:27 Download gff for BS07913.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 668..1579 17..928 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:44 Download gff for BS07913.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 668..1579 17..928 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:44 Download gff for BS07913.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5265606..5265637 897..928 100 -> Minus
3R 5266753..5267032 617..896 100 -> Minus
3R 5267121..5267201 536..616 100 -> Minus
3R 5267263..5267402 396..535 100 -> Minus
3R 5267462..5267836 21..395 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:44:27 Download gff for BS07913.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1091328..1091359 897..928 100 -> Minus
arm_3R 1092475..1092754 617..896 100 -> Minus
arm_3R 1092843..1092923 536..616 100 -> Minus
arm_3R 1092985..1093124 396..535 100 -> Minus
arm_3R 1093184..1093558 21..395 100 -> Minus

BS07913.5prime Sequence

926 bp (761 high quality bases) assembled on 2006-01-06

> BS07913.5prime
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCT
GAACCAGACTCCACCACCCACACACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCGGTTAGCATGTCCACGG

BS07913.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PA 978 Hph-RA 1..852 17..868 4260 100 Plus
CG31543-PC 1437 Hph-RC 557..1311 114..868 3775 100 Plus
CG31543-PB 837 Hph-RB 1..711 158..868 3555 100 Plus
CG31543-PA 978 Hph-RA 857..910 873..926 270 100 Plus
CG31543-PC 1437 Hph-RC 1316..1369 873..926 270 100 Plus
CG31543-PB 837 Hph-RB 716..769 873..926 270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 2337 CG44015-RA 602..1511 17..926 4505 99.8 Plus
Hph-RD 3171 CG44015-RD 1085..1897 114..926 4020 99.8 Plus
Hph-RC 2496 CG44015-RC 1085..1897 114..926 4020 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267772 615..926 1500 98.7 Plus
3R 32079331 3R 5266752..5267032 114..394 1405 100 Plus
3R 32079331 3R 5267262..5267402 475..615 705 100 Plus
3R 32079331 3R 5265540..5265637 17..114 490 100 Plus
3R 32079331 3R 5267117..5267202 391..476 430 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:20:57 has no hits.

BS07913.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:37 Download gff for BS07913.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:22:58 Download gff for BS07913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:59:22 Download gff for BS07913.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 591..1511 7..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:09 Download gff for BS07913.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 591..1511 7..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:09 Download gff for BS07913.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5265529..5265637 7..114 96 -> Plus
3R 5266753..5267032 115..394 100 -> Plus
3R 5267121..5267201 395..475 100 -> Plus
3R 5267263..5267402 476..615 100 -> Plus
3R 5267462..5267772 616..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:59:22 Download gff for BS07913.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1091251..1091359 7..114 96 -> Plus
arm_3R 1092475..1092754 115..394 100 -> Plus
arm_3R 1092843..1092923 395..475 100 -> Plus
arm_3R 1092985..1093124 476..615 100 -> Plus
arm_3R 1093184..1093494 616..926 99   Plus

BS07913.complete Sequence

1010 bp (1010 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636028

> BS07913.complete
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCT
GAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATG
TGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACGTAAAAGCTT
TCTAGACCAT

BS07913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 978 CG44015-PA 1..978 17..994 4890 100 Plus
Hph-RD 1437 CG44015-PD 557..1437 114..994 4405 100 Plus
Hph-RC 1437 CG44015-PC 557..1437 114..994 4405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 2337 CG44015-RA 602..1579 17..994 4890 100 Plus
Hph-RD 3171 CG44015-RD 1085..1965 114..994 4405 100 Plus
Hph-RC 2496 CG44015-RC 1085..1965 114..994 4405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267840 615..994 1900 100 Plus
3R 32079331 3R 5266752..5267032 114..394 1405 100 Plus
3R 32079331 3R 5267262..5267402 475..615 705 100 Plus
3R 32079331 3R 5265540..5265637 17..114 490 100 Plus
3R 32079331 3R 5267117..5267202 391..476 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:27:57 has no hits.

BS07913.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:18 Download gff for BS07913.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 1..978 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:31 Download gff for BS07913.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 588..1576 7..994 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:23 Download gff for BS07913.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 602..1577 17..992 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:18 Download gff for BS07913.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 588..1576 7..994 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:10 Download gff for BS07913.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 602..1577 17..992 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:10 Download gff for BS07913.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5266753..5267032 115..394 100 -> Plus
3R 5267121..5267201 395..475 100 -> Plus
3R 5267263..5267402 476..615 100 -> Plus
3R 5265540..5265637 17..114 100 -> Plus
3R 5267462..5267838 616..992 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:23 Download gff for BS07913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1091262..1091359 17..114 100 -> Plus
arm_3R 1092475..1092754 115..394 100 -> Plus
arm_3R 1092843..1092923 395..475 100 -> Plus
arm_3R 1092985..1093124 476..615 100 -> Plus
arm_3R 1093184..1093560 616..992 100   Plus

BS07913.pep Sequence

Translation from 16 to 993

> BS07913.pep
MITSTTTDYKNFFKHSAHPANAEQYFRELLDKRERRYEDLCRNIISDMNQ
YGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAVRGD
KIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYHIRE
RTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGGILR
IRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYFDAK
EREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSLPVS
MSTGTGALNANVSSNSCATSSEICT*

BS07913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PA 325 CG44015-PA 1..325 1..325 1719 100 Plus
Hph-PD 478 CG44015-PD 187..478 34..325 1543 100 Plus
Hph-PC 478 CG44015-PC 187..478 34..325 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 48..325 1468 100 Plus