Clone Sequence Records
BS07917.3prime Sequence
976 bp (818 high quality bases) assembled on 2006-01-06
> BS07917.3prime
ATGGTCTAGAAAGCTTTTAAATGCACATTTTGCTAACCTGCTGCAGCAAC
AGATTACGGCGTTCGCCCTTTGGTTCATTGTTTACAAACGGCACCAGAAT
GCCCAAAGCTGAAGTATACGACTCCAGTGCTGCGTCCAGCTTCCGCTCGT
AGAGGTATAGCTCACCCTTCCGTCCGATTTCCAGGCCAGTCTTCATGGAC
GGACTTGAGTTCGAAAGGGCATATAGCTGTTTATAGCGGGAATCCGGTTC
CAGCATTTCTGCAACACGCGAGCTGCTTGGCTGCGCAGCGGGCACCTGGG
TAGCTGAAGATGGCTCTTGGTTAGCTGTGGCAGCTGTAGCCGCCTGCCGT
TGACGTTCAGCCAACATTCTGTATTCGTCCTCGATTATGCAATTCTTGAT
TTCCTCGGCGCGCTTTGTGTAGGACAAGGCACGATTGCGCAATGCCAGCC
GCTTGGTGGCGTCCGTCTCCTCCGTGATAAGCGGCACAAAATACTGCAGG
GCACTGCAGTACAGATAGTAAGCCTCCTTGTAATTGTGTTTCTCATCGTA
TGCGCATGCTTGCGTGACCAAATCAATGGCCTTTTGCAGAGTGTGCTCCG
TGGGAAACGTCTTGAGATCGAGAAAGGGATGCGCAAAGAAGTCTGCAAAC
GAAATGCGCGCCGTGGGCTCGTGGGCCAAAAGGCGGCGCAAGAGATCATG
GCACTCGTTGCTGATCCGAGCGTTTGGTGGCAGTGTTATGGCCTCGGCCT
TCCTAATCCTCAGCAATAGCTCCTCAATGGTTCGCGAACTATACGGCGCC
TTGCCGAATAGGCATTCGTAGAGGATGACCCCGATGCTCCAGAGATCCGC
CTTGGCATCGTACTGATGCTTGCGCACAATCTCTGGGGCCATGTAGAGCG
GCGATCCCTTCAGCTGTTGATTGATTTCGCCTAGTTTGAGGTGCTGAGCA
AACCCCAAGTCTGCCACCTTCAGGGA
BS07917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-PB | 1398 | CG8866-RB | 439..1398 | 976..17 | 4775 | 99.8 | Minus |
CG8866-PA | 1563 | CG8866-RA | 439..1377 | 976..38 | 4670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 2113 | CG8866-RB | 556..1515 | 976..17 | 4785 | 99.9 | Minus |
CG8866-RA | 1684 | CG8866-RA | 556..1494 | 976..38 | 4680 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9332930..9333661 | 223..954 | 3660 | 100 | Plus |
3R | 32079331 | 3R | 9332662..9332867 | 17..222 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:40:48 has no hits.
BS07917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:45 Download gff for
BS07917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PB | 440..1398 | 17..975 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:07 Download gff for
BS07917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PB | 440..1398 | 17..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:59 Download gff for
BS07917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 557..1519 | 12..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:41 Download gff for
BS07917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 557..1519 | 12..975 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:41 Download gff for
BS07917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9332658..9332867 | 12..222 | 99 | <- | Plus |
3R | 9332930..9333660 | 223..953 | 100 | <- | Plus |
3R | 9333721..9333742 | 954..975 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:59 Download gff for
BS07917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5158380..5158589 | 12..222 | 99 | <- | Plus |
arm_3R | 5158652..5159382 | 223..953 | 100 | <- | Plus |
arm_3R | 5159443..5159464 | 954..975 | 95 | | Plus |
BS07917.5prime Sequence
856 bp (847 high quality bases) assembled on 2006-01-06
> BS07917.5prime
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATT
BS07917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-PA | 1563 | CG8866-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
CG8866-PB | 1398 | CG8866-RB | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 2113 | CG8866-RB | 116..957 | 15..856 | 4210 | 100 | Plus |
CG8866-RA | 1684 | CG8866-RA | 116..957 | 15..856 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9333282..9333661 | 856..477 | 1900 | 100 | Minus |
3R | 32079331 | 3R | 9333719..9333945 | 479..253 | 1135 | 100 | Minus |
3R | 32079331 | 3R | 9334294..9334442 | 252..104 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9334511..9334599 | 103..15 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:31:27 has no hits.
BS07917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:46 Download gff for
BS07917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:09 Download gff for
BS07917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PB | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:51 Download gff for
BS07917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RA | 116..957 | 15..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:37 Download gff for
BS07917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RA | 116..957 | 15..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:37 Download gff for
BS07917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9333282..9333660 | 478..856 | 100 | <- | Minus |
3R | 9333721..9333945 | 253..477 | 100 | <- | Minus |
3R | 9334294..9334442 | 104..252 | 100 | <- | Minus |
3R | 9334511..9334599 | 15..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:51 Download gff for
BS07917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5159004..5159382 | 478..856 | 100 | <- | Minus |
arm_3R | 5159443..5159667 | 253..477 | 100 | <- | Minus |
arm_3R | 5160016..5160164 | 104..252 | 100 | <- | Minus |
arm_3R | 5160233..5160321 | 15..103 | 100 | | Minus |
BS07917.complete Sequence
1430 bp (1430 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636029
> BS07917.complete
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATTGATTTGGTCACGCAAGCATGCGCATACGATGAGAAACACAATTA
CAAGGAGGCTTACTATCTGTACTGCAGTGCCCTGCAGTATTTTGTGCCGC
TTATCACGGAGGAGACGGACGCCACCAAGCGGCTGGCATTGCGCAATCGT
GCCTTGTCCTACACAAAGCGCGCCGAGGAAATCAAGAATTGCATAATCGA
GGACGAATACAGAATGTTGGCTGAACGTCAACGGCAGGCGGCTACAGCTG
CCACAGCTAACCAAGAGCCATCTTCAGCTACCCAGGTGCCCGCTGCGCAG
CCAAGCAGCTCGCGTGTTGCAGAAATGCTGGAACCGGATTCCCGCTATAA
ACAGCTATATGCCCTTTCGAACTCAAGTCCGTCCATGAAGACTGGCCTGG
AAATCGGACGGAAGGGTGAGCTATACCTCTACGAGCGGAAGCTGGACGCA
GCACTGGAGTCGTATACTTCAGCTTTGGGCATTCTGGTGCCGTTTGTAAA
CAATGAACCAAAGGGCGAACGCCGTAATCTGTTGCTGCAGCAGGTTAGCA
AAATGTGCATTTAAAAGCTTTCTAGACCAT
BS07917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 1398 | CG8866-PB | 1..1398 | 17..1414 | 6990 | 100 | Plus |
CG8866-RA | 1563 | CG8866-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 2113 | CG8866-RB | 116..1515 | 15..1414 | 7000 | 100 | Plus |
CG8866-RA | 1684 | CG8866-RA | 116..1494 | 15..1393 | 6895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9332930..9333661 | 1208..477 | 3660 | 100 | Minus |
3R | 32079331 | 3R | 9333719..9333945 | 479..253 | 1135 | 100 | Minus |
3R | 32079331 | 3R | 9332662..9332867 | 1414..1209 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 9334294..9334442 | 252..104 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9334511..9334599 | 103..15 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:59:11 has no hits.
BS07917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:20 Download gff for
BS07917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 1..1398 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:45 Download gff for
BS07917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 116..1519 | 15..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:39 Download gff for
BS07917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 118..1513 | 17..1412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:20 Download gff for
BS07917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 116..1519 | 15..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:31 Download gff for
BS07917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 118..1513 | 17..1412 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:31 Download gff for
BS07917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9332664..9332867 | 1209..1412 | 100 | <- | Minus |
3R | 9332930..9333660 | 478..1208 | 100 | <- | Minus |
3R | 9333721..9333945 | 253..477 | 100 | <- | Minus |
3R | 9334294..9334442 | 104..252 | 100 | <- | Minus |
3R | 9334511..9334597 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:39 Download gff for
BS07917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5159443..5159667 | 253..477 | 100 | <- | Minus |
arm_3R | 5160016..5160164 | 104..252 | 100 | <- | Minus |
arm_3R | 5160233..5160319 | 17..103 | 100 | | Minus |
arm_3R | 5158386..5158589 | 1209..1412 | 100 | <- | Minus |
arm_3R | 5158652..5159382 | 478..1208 | 100 | <- | Minus |
BS07917.pep Sequence
Translation from 16 to 1413
> BS07917.pep
MSLPRITDFEILEKLGAGSYATVYKARHKKQRTYHAIKYVEMSTLSQTSR
ENLITEIRLLRELKHKYIVTLQDFFWDDKNIYIVLEYCNAGNLSAFIRTK
KALPESTCRYFLRQLAAAVQYMRANDVSHFDLKPQNLLLTRGANNVSLKV
ADFGFAQHLKLGEINQQLKGSPLYMAPEIVRKHQYDAKADLWSIGVILYE
CLFGKAPYSSRTIEELLLRIRKAEAITLPPNARISNECHDLLRRLLAHEP
TARISFADFFAHPFLDLKTFPTEHTLQKAIDLVTQACAYDEKHNYKEAYY
LYCSALQYFVPLITEETDATKRLALRNRALSYTKRAEEIKNCIIEDEYRM
LAERQRQAATAATANQEPSSATQVPAAQPSSSRVAEMLEPDSRYKQLYAL
SNSSPSMKTGLEIGRKGELYLYERKLDAALESYTSALGILVPFVNNEPKG
ERRNLLLQQVSKMCI*
BS07917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-PB | 465 | CG8866-PB | 1..465 | 1..465 | 2380 | 100 | Plus |
CG8866-PA | 520 | CG8866-PA | 1..460 | 1..460 | 2350 | 99.8 | Plus |
Atg1-PA | 835 | CG10967-PA | 8..277 | 8..268 | 470 | 39.3 | Plus |
Atg1-PB | 855 | CG10967-PB | 8..277 | 8..268 | 470 | 39.3 | Plus |
Sik2-PA | 1398 | CG4290-PA | 137..392 | 5..265 | 401 | 34.4 | Plus |