Clone BS07917 Report

Search the DGRC for BS07917

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG8866-RB
Protein status:BS07917.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07917.3prime Sequence

976 bp (818 high quality bases) assembled on 2006-01-06

> BS07917.3prime
ATGGTCTAGAAAGCTTTTAAATGCACATTTTGCTAACCTGCTGCAGCAAC
AGATTACGGCGTTCGCCCTTTGGTTCATTGTTTACAAACGGCACCAGAAT
GCCCAAAGCTGAAGTATACGACTCCAGTGCTGCGTCCAGCTTCCGCTCGT
AGAGGTATAGCTCACCCTTCCGTCCGATTTCCAGGCCAGTCTTCATGGAC
GGACTTGAGTTCGAAAGGGCATATAGCTGTTTATAGCGGGAATCCGGTTC
CAGCATTTCTGCAACACGCGAGCTGCTTGGCTGCGCAGCGGGCACCTGGG
TAGCTGAAGATGGCTCTTGGTTAGCTGTGGCAGCTGTAGCCGCCTGCCGT
TGACGTTCAGCCAACATTCTGTATTCGTCCTCGATTATGCAATTCTTGAT
TTCCTCGGCGCGCTTTGTGTAGGACAAGGCACGATTGCGCAATGCCAGCC
GCTTGGTGGCGTCCGTCTCCTCCGTGATAAGCGGCACAAAATACTGCAGG
GCACTGCAGTACAGATAGTAAGCCTCCTTGTAATTGTGTTTCTCATCGTA
TGCGCATGCTTGCGTGACCAAATCAATGGCCTTTTGCAGAGTGTGCTCCG
TGGGAAACGTCTTGAGATCGAGAAAGGGATGCGCAAAGAAGTCTGCAAAC
GAAATGCGCGCCGTGGGCTCGTGGGCCAAAAGGCGGCGCAAGAGATCATG
GCACTCGTTGCTGATCCGAGCGTTTGGTGGCAGTGTTATGGCCTCGGCCT
TCCTAATCCTCAGCAATAGCTCCTCAATGGTTCGCGAACTATACGGCGCC
TTGCCGAATAGGCATTCGTAGAGGATGACCCCGATGCTCCAGAGATCCGC
CTTGGCATCGTACTGATGCTTGCGCACAATCTCTGGGGCCATGTAGAGCG
GCGATCCCTTCAGCTGTTGATTGATTTCGCCTAGTTTGAGGTGCTGAGCA
AACCCCAAGTCTGCCACCTTCAGGGA

BS07917.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-PB 1398 CG8866-RB 439..1398 976..17 4775 99.8 Minus
CG8866-PA 1563 CG8866-RA 439..1377 976..38 4670 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 2113 CG8866-RB 556..1515 976..17 4785 99.9 Minus
CG8866-RA 1684 CG8866-RA 556..1494 976..38 4680 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9332930..9333661 223..954 3660 100 Plus
3R 32079331 3R 9332662..9332867 17..222 1030 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:40:48 has no hits.

BS07917.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:45 Download gff for BS07917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PB 440..1398 17..975 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:07 Download gff for BS07917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PB 440..1398 17..975 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:59 Download gff for BS07917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 557..1519 12..975 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:41 Download gff for BS07917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 557..1519 12..975 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:41 Download gff for BS07917.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9332658..9332867 12..222 99 <- Plus
3R 9332930..9333660 223..953 100 <- Plus
3R 9333721..9333742 954..975 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:59 Download gff for BS07917.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5158380..5158589 12..222 99 <- Plus
arm_3R 5158652..5159382 223..953 100 <- Plus
arm_3R 5159443..5159464 954..975 95   Plus

BS07917.5prime Sequence

856 bp (847 high quality bases) assembled on 2006-01-06

> BS07917.5prime
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATT

BS07917.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-PA 1563 CG8866-RA 1..840 17..856 4200 100 Plus
CG8866-PB 1398 CG8866-RB 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 2113 CG8866-RB 116..957 15..856 4210 100 Plus
CG8866-RA 1684 CG8866-RA 116..957 15..856 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9333282..9333661 856..477 1900 100 Minus
3R 32079331 3R 9333719..9333945 479..253 1135 100 Minus
3R 32079331 3R 9334294..9334442 252..104 745 100 Minus
3R 32079331 3R 9334511..9334599 103..15 445 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:31:27 has no hits.

BS07917.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:46 Download gff for BS07917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:09 Download gff for BS07917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PB 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:51 Download gff for BS07917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RA 116..957 15..856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:37 Download gff for BS07917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RA 116..957 15..856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:37 Download gff for BS07917.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9333282..9333660 478..856 100 <- Minus
3R 9333721..9333945 253..477 100 <- Minus
3R 9334294..9334442 104..252 100 <- Minus
3R 9334511..9334599 15..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:51 Download gff for BS07917.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5159004..5159382 478..856 100 <- Minus
arm_3R 5159443..5159667 253..477 100 <- Minus
arm_3R 5160016..5160164 104..252 100 <- Minus
arm_3R 5160233..5160321 15..103 100   Minus

BS07917.complete Sequence

1430 bp (1430 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636029

> BS07917.complete
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATTGATTTGGTCACGCAAGCATGCGCATACGATGAGAAACACAATTA
CAAGGAGGCTTACTATCTGTACTGCAGTGCCCTGCAGTATTTTGTGCCGC
TTATCACGGAGGAGACGGACGCCACCAAGCGGCTGGCATTGCGCAATCGT
GCCTTGTCCTACACAAAGCGCGCCGAGGAAATCAAGAATTGCATAATCGA
GGACGAATACAGAATGTTGGCTGAACGTCAACGGCAGGCGGCTACAGCTG
CCACAGCTAACCAAGAGCCATCTTCAGCTACCCAGGTGCCCGCTGCGCAG
CCAAGCAGCTCGCGTGTTGCAGAAATGCTGGAACCGGATTCCCGCTATAA
ACAGCTATATGCCCTTTCGAACTCAAGTCCGTCCATGAAGACTGGCCTGG
AAATCGGACGGAAGGGTGAGCTATACCTCTACGAGCGGAAGCTGGACGCA
GCACTGGAGTCGTATACTTCAGCTTTGGGCATTCTGGTGCCGTTTGTAAA
CAATGAACCAAAGGGCGAACGCCGTAATCTGTTGCTGCAGCAGGTTAGCA
AAATGTGCATTTAAAAGCTTTCTAGACCAT

BS07917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 1398 CG8866-PB 1..1398 17..1414 6990 100 Plus
CG8866-RA 1563 CG8866-PA 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 2113 CG8866-RB 116..1515 15..1414 7000 100 Plus
CG8866-RA 1684 CG8866-RA 116..1494 15..1393 6895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9332930..9333661 1208..477 3660 100 Minus
3R 32079331 3R 9333719..9333945 479..253 1135 100 Minus
3R 32079331 3R 9332662..9332867 1414..1209 1030 100 Minus
3R 32079331 3R 9334294..9334442 252..104 745 100 Minus
3R 32079331 3R 9334511..9334599 103..15 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:59:11 has no hits.

BS07917.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:20 Download gff for BS07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:45 Download gff for BS07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 116..1519 15..1419 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:39 Download gff for BS07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 118..1513 17..1412 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:20 Download gff for BS07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 116..1519 15..1419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:31 Download gff for BS07917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 118..1513 17..1412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:31 Download gff for BS07917.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9332664..9332867 1209..1412 100 <- Minus
3R 9332930..9333660 478..1208 100 <- Minus
3R 9333721..9333945 253..477 100 <- Minus
3R 9334294..9334442 104..252 100 <- Minus
3R 9334511..9334597 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:39 Download gff for BS07917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5159443..5159667 253..477 100 <- Minus
arm_3R 5160016..5160164 104..252 100 <- Minus
arm_3R 5160233..5160319 17..103 100   Minus
arm_3R 5158386..5158589 1209..1412 100 <- Minus
arm_3R 5158652..5159382 478..1208 100 <- Minus

BS07917.pep Sequence

Translation from 16 to 1413

> BS07917.pep
MSLPRITDFEILEKLGAGSYATVYKARHKKQRTYHAIKYVEMSTLSQTSR
ENLITEIRLLRELKHKYIVTLQDFFWDDKNIYIVLEYCNAGNLSAFIRTK
KALPESTCRYFLRQLAAAVQYMRANDVSHFDLKPQNLLLTRGANNVSLKV
ADFGFAQHLKLGEINQQLKGSPLYMAPEIVRKHQYDAKADLWSIGVILYE
CLFGKAPYSSRTIEELLLRIRKAEAITLPPNARISNECHDLLRRLLAHEP
TARISFADFFAHPFLDLKTFPTEHTLQKAIDLVTQACAYDEKHNYKEAYY
LYCSALQYFVPLITEETDATKRLALRNRALSYTKRAEEIKNCIIEDEYRM
LAERQRQAATAATANQEPSSATQVPAAQPSSSRVAEMLEPDSRYKQLYAL
SNSSPSMKTGLEIGRKGELYLYERKLDAALESYTSALGILVPFVNNEPKG
ERRNLLLQQVSKMCI*

BS07917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-PB 465 CG8866-PB 1..465 1..465 2380 100 Plus
CG8866-PA 520 CG8866-PA 1..460 1..460 2350 99.8 Plus
Atg1-PA 835 CG10967-PA 8..277 8..268 470 39.3 Plus
Atg1-PB 855 CG10967-PB 8..277 8..268 470 39.3 Plus
Sik2-PA 1398 CG4290-PA 137..392 5..265 401 34.4 Plus