Clone BS07918 Report

Search the DGRC for BS07918

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptEst-Q-RA
Protein status:BS07918.pep: full length peptide match
Sequenced Size:1712

Clone Sequence Records

BS07918.3prime Sequence

907 bp (768 high quality bases) assembled on 2006-01-06

> BS07918.3prime
ATGGTCTAGAAAGCTTTTAAAACTCCATGTCTTCTCGCTGTAGTCTTCCA
TTGTCAGGATCGTCAATAGCGGCAGTTAAAGTGTCCAACAAATCGTCGCC
CTTAGTTACTTCCAAATTAAGTTTGTTATACGGACCACTTGCGCTACTTA
GCGGACTAAGATTTCTGGGAACACCTTCGATGGCAAATGAAGTCCACACA
TCGACCATTTTCTGAGACATCTGAGTGTCCTGCCCCTCCAGGGGATGCGT
GGCGAAGAGGTAGATGTTGTCGTTCGAGTGATGCACTCCTCCATTGAAGG
GATAGTGCGAGTTGCCGAACTCATATCCAAATCGAGTGTATGTTCCCTCG
TACTCAAAACTGTAGACGTAAACTGGCGTGGACCGTTGCTGGGTGTACAT
TTTGGTAGCCAGAGTTATTACCGGGGACTTCATGAAGATGTTCGTAGTGA
GATCGAAGTACGAGGACACTGCTGCACTATGATCATGACTGTTAAGCGCC
TGAGGCTTAAAGAGCAACCGATTTAATATGTTATCCGTGAGTCCCGATGT
GTCATTGACCAGATCATTGATACCCTGGGAAAACTGACGGACACTTAATG
AACTCACATTGGCCACCTTTGCAGCCAGCGCATCATAATAGCTTGCTAGC
ACAAAGGAACCATCGTGTTGAGTGAATCCTGTCAGAATAGGAATCTGTCT
GCGATAGCTTTTCACCAGCTCACTGGGCTGTTGTGGGAGGATGCCGTGAA
GGTCTCCAACAATCGGCGAANAGGATTCTGAGGCCGTGGCCTTTAGAATG
TCTATAACTTTCGCTTTTTGAATACACTTCACAAGCTGATCGTGTTGCTC
ACAGCCAGAACATCCCAACTGAATACAGATACGTCTAGATTGTGCCTTCG
GATCCTT

BS07918.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7529-PA 1680 CG7529-RA 790..1680 907..17 4436 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Est-Q-RA 1827 CG7529-RA 834..1728 907..13 4449 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21503422..21503860 451..13 2180 99.8 Minus
3L 28110227 3L 21502851..21503116 907..642 1319 99.6 Minus
3L 28110227 3L 21503173..21503363 642..452 955 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:35:44 has no hits.

BS07918.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:47 Download gff for BS07918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7529-PA 790..1680 17..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:10 Download gff for BS07918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7529-PA 790..1680 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:39:51 Download gff for BS07918.3prime
Subject Subject Range Query Range Percent Splice Strand
Est-Q-RA 834..1728 13..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:10 Download gff for BS07918.3prime
Subject Subject Range Query Range Percent Splice Strand
Est-Q-RA 834..1728 13..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:10 Download gff for BS07918.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21502851..21503115 643..907 99 -> Minus
3L 21503173..21503363 452..642 100 -> Minus
3L 21503422..21503860 13..451 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:39:51 Download gff for BS07918.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21496273..21496463 452..642 100 -> Minus
arm_3L 21495951..21496215 643..907 99 -> Minus
arm_3L 21496522..21496960 13..451 99   Minus

BS07918.5prime Sequence

863 bp (813 high quality bases) assembled on 2006-01-06

> BS07918.5prime
GAAGTTATCAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGC
TGTGCGGGGTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTC
ACCGGCGGCCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGA
ACTGTATAATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCT
GGACGGATCGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCA
CCAATAGAGGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGAC
AGGCACCCTCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAA
ATCTAGATAGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTG
TCGGTATACACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATAT
CTACGGCGGCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACT
ACCTTCTGGAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGA
GCCCTCGGCTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCC
CATAGCCGATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTA
GCTTTGGCGGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGC
GCTGGAGTAGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATAT
GTTCAAGAGAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAA
TCAACAAGGATCCGAAAGCACAATCTAGACGTATCTGTATTCAGTTGGGA
TGTTCTGGCTGTG

BS07918.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7529-PA 1680 CG7529-RA 1..847 17..863 4210 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Est-Q-RA 1827 CG7529-RA 45..891 17..863 4220 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21502464..21502908 419..863 2210 99.8 Plus
3L 28110227 3L 21501465..21501722 17..274 1290 100 Plus
3L 28110227 3L 21502165..21502309 274..418 725 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:43:31 has no hits.

BS07918.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:48 Download gff for BS07918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7529-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:11 Download gff for BS07918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7529-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:42 Download gff for BS07918.5prime
Subject Subject Range Query Range Percent Splice Strand
Est-Q-RA 36..891 8..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:33 Download gff for BS07918.5prime
Subject Subject Range Query Range Percent Splice Strand
Est-Q-RA 36..891 8..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:33 Download gff for BS07918.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21501456..21501722 8..274 98 -> Plus
3L 21502166..21502309 275..418 100 -> Plus
3L 21502464..21502908 419..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:42 Download gff for BS07918.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21494556..21494822 8..274 98 -> Plus
arm_3L 21495266..21495409 275..418 100 -> Plus
arm_3L 21495564..21496008 419..863 99   Plus

BS07918.complete Sequence

1712 bp assembled on 2009-08-24

GenBank Submission: KX800598

> BS07918.complete
GAAGTTATCAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGC
TGTGCGGGGTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTC
ACCGGCGGCCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGA
ACTGTATAATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCT
GGACGGATCGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCA
CCAATAGAGGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGAC
AGGCACCCTCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAA
ATCTAGATAGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTG
TCGGTATACACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATAT
CTACGGCGGCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACT
ACCTTCTGGAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGA
GCCCTCGGCTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCC
CATAGCCGATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTA
GCTTTGGCGGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGC
GCTGGAGTAGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATAT
GTTCAAGAGAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAA
TCAACAAGGATCCGAAGGCACAATCTAGACGTATCTGTATTCAGTTGGGA
TGTTCTGGCTGTGAGCAACACGATCAGCTTGTGAAGTGTATTCAAAAAGC
GAAAGTTATAGACATTCTAAAGGCCACGGCCTCAGAATCCTTTTCGCCGA
TTGTTGGAGACCTTCACGGCATCCTCCCACAACAGCCCAGTGAGCTGGTG
AAAAGCTATCGCAGACAGATTCCTATTCTGACAGGATTCACTCAACACGA
TGGTTCCTTTGTGCTAGCAAGCTATTATGATGCGCTGGCTGCAAAGGTGG
CCAATGTGAGTTCATTAAGTGTCCGTCAGTTTTCCCAGGGTATCAATGAT
CTGGTCAATGACACATCGGGACTCACGGATAACATATTAAATCGGTTGCT
CTTTAAGCCTCAGGCGCTTAACAGTCATGATCATAGTGCAGCAGTGTCCT
CGTACTTCGATCTCACTACGAACATCTTCATGAAGTCCCCGGTAATAACT
CTGGCTACCAAAATGTACACCCAGCAACGGTCCACGCCAGTTTACGTCTA
CAGTTTTGAGTACGAGGGAACATACACTCGATTTGGATATGAGTTCGGCA
ACTCGCACTATCCCTTCAATGGAGGAGTGCATCACTCGAACGACAACATC
TACCTCTTCGCCACGCATCCCCTGGAGGGGCAGGACACTCAGATGTCTCA
GAAAATGGTCGATGTGTGGACTTCATTTGCCATCGAAGGTGTTCCCAGAA
ATCTTAGTCCGCTAAGTAGCGCAAGTGGTCCGTATAACAAACTTAATTTG
GAAGTAACTAAGGGCGACGATTTGTTGGACACTTTAACTGCCGCTATTGA
CGATCCTGACAATGGAAGACTACAGCGAGAAGACATGGAGTTTTAAAAGC
TTTCTAGACCAT

BS07918.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Est-Q-RA 1680 CG7529-PA 1..1680 17..1696 8400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Est-Q-RA 1827 CG7529-RA 45..1728 17..1700 8405 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21502464..21503116 419..1071 3265 100 Plus
3L 28110227 3L 21503422..21503860 1262..1700 2180 99.8 Plus
3L 28110227 3L 21501465..21501722 17..274 1290 100 Plus
3L 28110227 3L 21503173..21503363 1071..1261 955 100 Plus
3L 28110227 3L 21502165..21502309 274..418 725 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:32:44 has no hits.

BS07918.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:52 Download gff for BS07918.complete
Subject Subject Range Query Range Percent Splice Strand
CG7529-RA 37..1714 17..1694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:40 Download gff for BS07918.complete
Subject Subject Range Query Range Percent Splice Strand
Est-Q-RA 45..1722 17..1694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:06 Download gff for BS07918.complete
Subject Subject Range Query Range Percent Splice Strand
Est-Q-RA 45..1722 17..1694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:06 Download gff for BS07918.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21501465..21501722 17..274 100 -> Plus
3L 21502166..21502309 275..418 100 -> Plus
3L 21502464..21503115 419..1070 100 -> Plus
3L 21503173..21503363 1071..1261 100 -> Plus
3L 21503422..21503854 1262..1694 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:40 Download gff for BS07918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21494565..21494822 17..274 100 -> Plus
arm_3L 21495266..21495409 275..418 100 -> Plus
arm_3L 21495564..21496215 419..1070 100 -> Plus
arm_3L 21496273..21496463 1071..1261 100 -> Plus
arm_3L 21496522..21496954 1262..1694 100   Plus

BS07918.pep Sequence

Translation from 16 to 1695

> BS07918.pep
MRRRGVYVMLTLCGVLTAGLTAFLVIFLTGGQGADASETATVTVELYNGQ
GTVLGNYAYTAWTDRAFMQFRGIPFAEPPIEELRFRPPVARSPWTGTLNA
LNFGQRCPVITNLDSQMSDAELEDCLTLSVYTKNLSASQPVMFYIYGGGF
YNGSSEDHPPNYLLEKDVVLVVPQYRVGALGWLSTYTEELPGNAPIADIL
MALDWVQMHISSFGGDPQKVTIFGQSAGAGVASSLLLSPKTGDNMFKRAI
VQSGSIFASWAINKDPKAQSRRICIQLGCSGCEQHDQLVKCIQKAKVIDI
LKATASESFSPIVGDLHGILPQQPSELVKSYRRQIPILTGFTQHDGSFVL
ASYYDALAAKVANVSSLSVRQFSQGINDLVNDTSGLTDNILNRLLFKPQA
LNSHDHSAAVSSYFDLTTNIFMKSPVITLATKMYTQQRSTPVYVYSFEYE
GTYTRFGYEFGNSHYPFNGGVHHSNDNIYLFATHPLEGQDTQMSQKMVDV
WTSFAIEGVPRNLSPLSSASGPYNKLNLEVTKGDDLLDTLTAAIDDPDNG
RLQREDMEF*

BS07918.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Est-Q-PA 559 CG7529-PA 1..559 1..559 2917 100 Plus
CG9289-PA 674 CG9289-PA 67..609 31..550 711 33.4 Plus
CG9287-PA 625 CG9287-PA 24..569 32..550 658 30.6 Plus
Glt-PD 1026 CG9280-PD 68..562 51..523 513 28.8 Plus
Glt-PA 1026 CG9280-PA 68..562 51..523 513 28.8 Plus