Clone Sequence Records
BS07918.3prime Sequence
907 bp (768 high quality bases) assembled on 2006-01-06
> BS07918.3prime
ATGGTCTAGAAAGCTTTTAAAACTCCATGTCTTCTCGCTGTAGTCTTCCA
TTGTCAGGATCGTCAATAGCGGCAGTTAAAGTGTCCAACAAATCGTCGCC
CTTAGTTACTTCCAAATTAAGTTTGTTATACGGACCACTTGCGCTACTTA
GCGGACTAAGATTTCTGGGAACACCTTCGATGGCAAATGAAGTCCACACA
TCGACCATTTTCTGAGACATCTGAGTGTCCTGCCCCTCCAGGGGATGCGT
GGCGAAGAGGTAGATGTTGTCGTTCGAGTGATGCACTCCTCCATTGAAGG
GATAGTGCGAGTTGCCGAACTCATATCCAAATCGAGTGTATGTTCCCTCG
TACTCAAAACTGTAGACGTAAACTGGCGTGGACCGTTGCTGGGTGTACAT
TTTGGTAGCCAGAGTTATTACCGGGGACTTCATGAAGATGTTCGTAGTGA
GATCGAAGTACGAGGACACTGCTGCACTATGATCATGACTGTTAAGCGCC
TGAGGCTTAAAGAGCAACCGATTTAATATGTTATCCGTGAGTCCCGATGT
GTCATTGACCAGATCATTGATACCCTGGGAAAACTGACGGACACTTAATG
AACTCACATTGGCCACCTTTGCAGCCAGCGCATCATAATAGCTTGCTAGC
ACAAAGGAACCATCGTGTTGAGTGAATCCTGTCAGAATAGGAATCTGTCT
GCGATAGCTTTTCACCAGCTCACTGGGCTGTTGTGGGAGGATGCCGTGAA
GGTCTCCAACAATCGGCGAANAGGATTCTGAGGCCGTGGCCTTTAGAATG
TCTATAACTTTCGCTTTTTGAATACACTTCACAAGCTGATCGTGTTGCTC
ACAGCCAGAACATCCCAACTGAATACAGATACGTCTAGATTGTGCCTTCG
GATCCTT
BS07918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7529-PA | 1680 | CG7529-RA | 790..1680 | 907..17 | 4436 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-Q-RA | 1827 | CG7529-RA | 834..1728 | 907..13 | 4449 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21503422..21503860 | 451..13 | 2180 | 99.8 | Minus |
3L | 28110227 | 3L | 21502851..21503116 | 907..642 | 1319 | 99.6 | Minus |
3L | 28110227 | 3L | 21503173..21503363 | 642..452 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:35:44 has no hits.
BS07918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:47 Download gff for
BS07918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7529-PA | 790..1680 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:10 Download gff for
BS07918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7529-PA | 790..1680 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:39:51 Download gff for
BS07918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-Q-RA | 834..1728 | 13..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:10 Download gff for
BS07918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-Q-RA | 834..1728 | 13..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:10 Download gff for
BS07918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21502851..21503115 | 643..907 | 99 | -> | Minus |
3L | 21503173..21503363 | 452..642 | 100 | -> | Minus |
3L | 21503422..21503860 | 13..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:39:51 Download gff for
BS07918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21496273..21496463 | 452..642 | 100 | -> | Minus |
arm_3L | 21495951..21496215 | 643..907 | 99 | -> | Minus |
arm_3L | 21496522..21496960 | 13..451 | 99 | | Minus |
BS07918.5prime Sequence
863 bp (813 high quality bases) assembled on 2006-01-06
> BS07918.5prime
GAAGTTATCAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGC
TGTGCGGGGTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTC
ACCGGCGGCCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGA
ACTGTATAATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCT
GGACGGATCGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCA
CCAATAGAGGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGAC
AGGCACCCTCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAA
ATCTAGATAGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTG
TCGGTATACACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATAT
CTACGGCGGCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACT
ACCTTCTGGAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGA
GCCCTCGGCTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCC
CATAGCCGATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTA
GCTTTGGCGGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGC
GCTGGAGTAGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATAT
GTTCAAGAGAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAA
TCAACAAGGATCCGAAAGCACAATCTAGACGTATCTGTATTCAGTTGGGA
TGTTCTGGCTGTG
BS07918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7529-PA | 1680 | CG7529-RA | 1..847 | 17..863 | 4210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-Q-RA | 1827 | CG7529-RA | 45..891 | 17..863 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21502464..21502908 | 419..863 | 2210 | 99.8 | Plus |
3L | 28110227 | 3L | 21501465..21501722 | 17..274 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 21502165..21502309 | 274..418 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:43:31 has no hits.
BS07918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:48 Download gff for
BS07918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7529-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:11 Download gff for
BS07918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7529-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:42 Download gff for
BS07918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-Q-RA | 36..891 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:33 Download gff for
BS07918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-Q-RA | 36..891 | 8..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:33 Download gff for
BS07918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21501456..21501722 | 8..274 | 98 | -> | Plus |
3L | 21502166..21502309 | 275..418 | 100 | -> | Plus |
3L | 21502464..21502908 | 419..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:42 Download gff for
BS07918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21494556..21494822 | 8..274 | 98 | -> | Plus |
arm_3L | 21495266..21495409 | 275..418 | 100 | -> | Plus |
arm_3L | 21495564..21496008 | 419..863 | 99 | | Plus |
BS07918.complete Sequence
1712 bp assembled on 2009-08-24
GenBank Submission: KX800598
> BS07918.complete
GAAGTTATCAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGC
TGTGCGGGGTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTC
ACCGGCGGCCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGA
ACTGTATAATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCT
GGACGGATCGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCA
CCAATAGAGGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGAC
AGGCACCCTCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAA
ATCTAGATAGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTG
TCGGTATACACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATAT
CTACGGCGGCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACT
ACCTTCTGGAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGA
GCCCTCGGCTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCC
CATAGCCGATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTA
GCTTTGGCGGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGC
GCTGGAGTAGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATAT
GTTCAAGAGAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAA
TCAACAAGGATCCGAAGGCACAATCTAGACGTATCTGTATTCAGTTGGGA
TGTTCTGGCTGTGAGCAACACGATCAGCTTGTGAAGTGTATTCAAAAAGC
GAAAGTTATAGACATTCTAAAGGCCACGGCCTCAGAATCCTTTTCGCCGA
TTGTTGGAGACCTTCACGGCATCCTCCCACAACAGCCCAGTGAGCTGGTG
AAAAGCTATCGCAGACAGATTCCTATTCTGACAGGATTCACTCAACACGA
TGGTTCCTTTGTGCTAGCAAGCTATTATGATGCGCTGGCTGCAAAGGTGG
CCAATGTGAGTTCATTAAGTGTCCGTCAGTTTTCCCAGGGTATCAATGAT
CTGGTCAATGACACATCGGGACTCACGGATAACATATTAAATCGGTTGCT
CTTTAAGCCTCAGGCGCTTAACAGTCATGATCATAGTGCAGCAGTGTCCT
CGTACTTCGATCTCACTACGAACATCTTCATGAAGTCCCCGGTAATAACT
CTGGCTACCAAAATGTACACCCAGCAACGGTCCACGCCAGTTTACGTCTA
CAGTTTTGAGTACGAGGGAACATACACTCGATTTGGATATGAGTTCGGCA
ACTCGCACTATCCCTTCAATGGAGGAGTGCATCACTCGAACGACAACATC
TACCTCTTCGCCACGCATCCCCTGGAGGGGCAGGACACTCAGATGTCTCA
GAAAATGGTCGATGTGTGGACTTCATTTGCCATCGAAGGTGTTCCCAGAA
ATCTTAGTCCGCTAAGTAGCGCAAGTGGTCCGTATAACAAACTTAATTTG
GAAGTAACTAAGGGCGACGATTTGTTGGACACTTTAACTGCCGCTATTGA
CGATCCTGACAATGGAAGACTACAGCGAGAAGACATGGAGTTTTAAAAGC
TTTCTAGACCAT
BS07918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-Q-RA | 1680 | CG7529-PA | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-Q-RA | 1827 | CG7529-RA | 45..1728 | 17..1700 | 8405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21502464..21503116 | 419..1071 | 3265 | 100 | Plus |
3L | 28110227 | 3L | 21503422..21503860 | 1262..1700 | 2180 | 99.8 | Plus |
3L | 28110227 | 3L | 21501465..21501722 | 17..274 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 21503173..21503363 | 1071..1261 | 955 | 100 | Plus |
3L | 28110227 | 3L | 21502165..21502309 | 274..418 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:32:44 has no hits.
BS07918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:52 Download gff for
BS07918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7529-RA | 37..1714 | 17..1694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:40 Download gff for
BS07918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-Q-RA | 45..1722 | 17..1694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:06 Download gff for
BS07918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-Q-RA | 45..1722 | 17..1694 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:06 Download gff for
BS07918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21501465..21501722 | 17..274 | 100 | -> | Plus |
3L | 21502166..21502309 | 275..418 | 100 | -> | Plus |
3L | 21502464..21503115 | 419..1070 | 100 | -> | Plus |
3L | 21503173..21503363 | 1071..1261 | 100 | -> | Plus |
3L | 21503422..21503854 | 1262..1694 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:40 Download gff for
BS07918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21494565..21494822 | 17..274 | 100 | -> | Plus |
arm_3L | 21495266..21495409 | 275..418 | 100 | -> | Plus |
arm_3L | 21495564..21496215 | 419..1070 | 100 | -> | Plus |
arm_3L | 21496273..21496463 | 1071..1261 | 100 | -> | Plus |
arm_3L | 21496522..21496954 | 1262..1694 | 100 | | Plus |
BS07918.pep Sequence
Translation from 16 to 1695
> BS07918.pep
MRRRGVYVMLTLCGVLTAGLTAFLVIFLTGGQGADASETATVTVELYNGQ
GTVLGNYAYTAWTDRAFMQFRGIPFAEPPIEELRFRPPVARSPWTGTLNA
LNFGQRCPVITNLDSQMSDAELEDCLTLSVYTKNLSASQPVMFYIYGGGF
YNGSSEDHPPNYLLEKDVVLVVPQYRVGALGWLSTYTEELPGNAPIADIL
MALDWVQMHISSFGGDPQKVTIFGQSAGAGVASSLLLSPKTGDNMFKRAI
VQSGSIFASWAINKDPKAQSRRICIQLGCSGCEQHDQLVKCIQKAKVIDI
LKATASESFSPIVGDLHGILPQQPSELVKSYRRQIPILTGFTQHDGSFVL
ASYYDALAAKVANVSSLSVRQFSQGINDLVNDTSGLTDNILNRLLFKPQA
LNSHDHSAAVSSYFDLTTNIFMKSPVITLATKMYTQQRSTPVYVYSFEYE
GTYTRFGYEFGNSHYPFNGGVHHSNDNIYLFATHPLEGQDTQMSQKMVDV
WTSFAIEGVPRNLSPLSSASGPYNKLNLEVTKGDDLLDTLTAAIDDPDNG
RLQREDMEF*
BS07918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-Q-PA | 559 | CG7529-PA | 1..559 | 1..559 | 2917 | 100 | Plus |
CG9289-PA | 674 | CG9289-PA | 67..609 | 31..550 | 711 | 33.4 | Plus |
CG9287-PA | 625 | CG9287-PA | 24..569 | 32..550 | 658 | 30.6 | Plus |
Glt-PD | 1026 | CG9280-PD | 68..562 | 51..523 | 513 | 28.8 | Plus |
Glt-PA | 1026 | CG9280-PA | 68..562 | 51..523 | 513 | 28.8 | Plus |