Clone BS07920 Report

Search the DGRC for BS07920

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4ac1-RA
Protein status:BS07920.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07920.5prime Sequence

968 bp (829 high quality bases) assembled on 2006-01-06

> BS07920.5prime
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACCCTGGTAGC
AGCCGAAGCAGATGGTCAGATCGATCATCAGGGTATCTGCGATGAGGTCA
ATACCTTTATGTTCGAGG

BS07920.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14032-PA 1530 Cyp4ac1-RA 1..952 17..968 4735 99.8 Plus
CG17970-PA 1494 Cyp4ac2-RA 796..913 851..968 490 96.6 Plus
CG14031-PA 1530 Cyp4ac3-RA 796..867 812..883 210 91.6 Plus
CG14031-PA 1530 Cyp4ac3-RA 902..949 918..965 190 95.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1666 CG14032-RA 34..985 17..968 4745 99.9 Plus
Cyp4ac3-RA 1606 CG14031-RA 49..997 17..965 1445 77.3 Plus
Cyp4ac2-RB 1709 CG17970-RB 193..995 166..968 890 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5264855..5265218 605..968 1805 99.7 Plus
2L 23513712 2L 5264295..5264499 218..422 1025 100 Plus
2L 23513712 2L 5264034..5264235 17..218 1010 100 Plus
2L 23513712 2L 5269360..5269720 605..965 770 80.9 Plus
2L 23513712 2L 5267624..5267741 851..968 530 96.6 Plus
2L 23513712 2L 5264696..5264796 505..605 505 100 Plus
2L 23513712 2L 5264557..5264644 422..509 425 98.9 Plus
2L 23513712 2L 5268546..5268728 17..199 300 77.6 Plus
2L 23513712 2L 5268823..5269000 242..419 290 77.5 Plus
2L 23513712 2L 5266748..5266896 272..420 250 77.9 Plus
Blast to na_te.dros performed 2015-02-10 21:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5065..5144 647..725 118 62.5 Plus
TART-C 11124 TART-C TARTC 11124bp 6521..6600 647..725 118 62.5 Plus

BS07920.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:53 Download gff for BS07920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 1..952 17..968 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:17 Download gff for BS07920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 1..952 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:33 Download gff for BS07920.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..985 17..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:51 Download gff for BS07920.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..985 17..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:51 Download gff for BS07920.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5264034..5264235 17..218 100 -> Plus
2L 5264296..5264499 219..422 100 -> Plus
2L 5264558..5264639 423..504 100 -> Plus
2L 5264696..5264796 505..605 100 -> Plus
2L 5264856..5265218 606..968 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:33 Download gff for BS07920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5264034..5264235 17..218 100 -> Plus
arm_2L 5264296..5264499 219..422 100 -> Plus
arm_2L 5264558..5264639 423..504 100 -> Plus
arm_2L 5264696..5264796 505..605 100 -> Plus
arm_2L 5264856..5265218 606..968 99   Plus

BS07920.3prime Sequence

828 bp (827 high quality bases) assembled on 2006-01-06

> BS07920.3prime
ATGGTCTAGAAAGCTTTCATTTTACCCTTTTCGATAGCTTCACTTTGATA
TTCTCTTGTGTGCGCAGCACGATTCCGTTCTCAAAAGTGAGATCCTCCAA
CTGGGTGGCGGGCAGGAGTTTAAAGTTCCTAATCACAGCGGCCAGGAGCA
CCTTCATCTCCAGAATGGCAAACTTCTGACCAATGCAATTCCTCTGGCCT
GCACTAAAAGGCACATATGCAAAAGGATGACGATTCACTGTGTTCTCCGG
TAGAAATCTGTCTGGCTGGAACAGATCTGGTTTCGGGAAATGTCGCGGAT
CTCTCATTATGTCGTATATGTGGATGCTGATCTGGGTGTCCTTTGGCATC
ACCATTCCATTCACCACAGTCTCCTCCACGCATTGGCGCCCAATAAATGG
CACTGATGGAAACATTCTCAGCGATTCCTTTATCACACATTCCAAGTAGA
CTAGTTTGTTGAACTGAAACATACTGATGTCATCGCTGTCCTCGGGAAGA
TTTTCCACCTCCTCATAGCACTTCTTCTGGACATCCTCGTGGAGAGCCAG
CATCAATAGGGTAAATATTAGACAGGTGGACGTAGTATCGTAACCCTCGA
ACATAAAGGTATTGACCTCATCGCAGATACCCTGATGATCGATCTGACCA
TCTGCTTCGGCTGCTAACAGGGTATCCAACATGGCGTATCGCTGCTTCCT
GCCAAATTCATCGACTTCTCCAAGTTGTTTCTGCTGGAATTGCTGCCTTT
TTCGTTCGATAATGCGACTGGAGAAGTCGTGAACTATTCGAAGATTCTGC
AAATGCTTTCTATAGTCTCCGTAAACGA

BS07920.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14032-PA 1530 Cyp4ac1-RA 719..1530 828..17 4060 100 Minus
CG17970-PA 1494 Cyp4ac2-RA 796..999 712..509 895 97.5 Minus
CG14031-PA 1530 Cyp4ac3-RA 1393..1487 154..60 350 94.7 Minus
CG14031-PA 1530 Cyp4ac3-RA 796..867 751..680 210 91.6 Minus
CG14031-PA 1530 Cyp4ac3-RA 902..962 645..585 205 93.4 Minus
CG14031-PA 1530 Cyp4ac3-RA 1211..1247 336..300 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1666 CG14032-RA 752..1563 828..17 4060 100 Minus
Cyp4ac2-RB 1709 CG17970-RB 878..1527 712..63 1600 83.1 Minus
Cyp4ac3-RA 1606 CG14031-RA 770..1556 825..39 1595 80.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5264985..5265796 828..17 4060 100 Minus
2L 23513712 2L 5267624..5268273 712..63 1600 83.1 Minus
2L 23513712 2L 5269535..5270279 783..39 1580 80.8 Minus
3L 28110227 3L 2476536..2476609 150..223 190 83.8 Plus
Blast to na_te.dros performed on 2015-02-11 11:56:44 has no hits.

BS07920.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:52 Download gff for BS07920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 720..1530 17..827 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:16 Download gff for BS07920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 720..1530 17..827 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:43 Download gff for BS07920.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 753..1573 9..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:18 Download gff for BS07920.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 753..1573 9..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:18 Download gff for BS07920.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5264986..5265806 9..827 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:43 Download gff for BS07920.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5264986..5265806 9..827 99   Minus

BS07920.complete Sequence

1562 bp (1562 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636030

> BS07920.complete
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACCCTGTTAGC
AGCCGAAGCAGATGGTCAGATCGATCATCAGGGTATCTGCGATGAGGTCA
ATACCTTTATGTTCGAGGGTTACGATACTACGTCCACCTGTCTAATATTT
ACCCTATTGATGCTGGCTCTCCACGAGGATGTCCAGAAGAAGTGCTATGA
GGAGGTGGAAAATCTTCCCGAGGACAGCGATGACATCAGTATGTTTCAGT
TCAACAAACTAGTCTACTTGGAATGTGTGATAAAGGAATCGCTGAGAATG
TTTCCATCAGTGCCATTTATTGGGCGCCAATGCGTGGAGGAGACTGTGGT
GAATGGAATGGTGATGCCAAAGGACACCCAGATCAGCATCCACATATACG
ACATAATGAGAGATCCGCGACATTTCCCGAAACCAGATCTGTTCCAGCCA
GACAGATTTCTACCGGAGAACACAGTGAATCGTCATCCTTTTGCATATGT
GCCTTTTAGTGCAGGCCAGAGGAATTGCATTGGTCAGAAGTTTGCCATTC
TGGAGATGAAGGTGCTCCTGGCCGCTGTGATTAGGAACTTTAAACTCCTG
CCCGCCACCCAGTTGGAGGATCTCACTTTTGAGAACGGAATCGTGCTGCG
CACACAAGAGAATATCAAAGTGAAGCTATCGAAAAGGGTAAAATGAAAGC
TTTCTAGACCAT

BS07920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1530 CG14032-PA 1..1530 17..1546 7650 100 Plus
Cyp4ac3-RA 1530 CG14031-PA 1..1508 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1536 CG17970-PB 153..1487 166..1500 1935 76.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1666 CG14032-RA 34..1563 17..1546 7650 100 Plus
Cyp4ac3-RA 1606 CG14031-RA 49..1556 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1709 CG17970-RB 193..1527 166..1500 1935 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5264855..5265796 605..1546 4710 100 Plus
2L 23513712 2L 5269360..5270279 605..1524 1855 80.1 Plus
2L 23513712 2L 5267624..5268273 851..1500 1600 83.1 Plus
2L 23513712 2L 5264295..5264499 218..422 1025 100 Plus
2L 23513712 2L 5264034..5264235 17..218 1010 100 Plus
2L 23513712 2L 5264696..5264796 505..605 505 100 Plus
2L 23513712 2L 5264557..5264644 422..509 425 98.9 Plus
2L 23513712 2L 5268546..5268728 17..199 300 77.6 Plus
2L 23513712 2L 5268823..5269000 242..419 290 77.5 Plus
2L 23513712 2L 5266748..5266896 272..420 250 77.9 Plus
3L 28110227 3L 2476536..2476609 1413..1340 190 83.8 Minus
Blast to na_te.dros performed on 2014-11-27 23:55:35 has no hits.

BS07920.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:21 Download gff for BS07920.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:49 Download gff for BS07920.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1573 17..1554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:36 Download gff for BS07920.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1556 17..1539 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:21 Download gff for BS07920.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1573 17..1554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:00 Download gff for BS07920.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1556 17..1539 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:00 Download gff for BS07920.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5264034..5264235 17..218 100 -> Plus
2L 5264296..5264499 219..422 100 -> Plus
2L 5264558..5264639 423..504 100 -> Plus
2L 5264696..5264796 505..605 100 -> Plus
2L 5264856..5265789 606..1539 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:36 Download gff for BS07920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5264034..5264235 17..218 100 -> Plus
arm_2L 5264296..5264499 219..422 100 -> Plus
arm_2L 5264558..5264639 423..504 100 -> Plus
arm_2L 5264696..5264796 505..605 100 -> Plus
arm_2L 5264856..5265789 606..1539 100   Plus

BS07920.pep Sequence

Translation from 16 to 1545

> BS07920.pep
MWIALLGIPILLAVLTLLLKHINKTYFILSLTKRVRTEDGSPLESKVAIM
PGKTRFGNNLDILNFTPASVFNFVRESTAKAKGQNYLWYFLYAPMYNVVR
PEEAEEVFQSTKLITKNVVYELIRPFLGDGLLISTDHKWHSRRKALTPAF
HFNVLQSFLGIFKEECKKFLNVLEKNLDAELELNQVIPPFTLNNICETAL
GVKLDDMSEGNEYRKAIHAIEEVLIQRVCNPLMYYNWYFFVYGDYRKHLQ
NLRIVHDFSSRIIERKRQQFQQKQLGEVDEFGRKQRYAMLDTLLAAEADG
QIDHQGICDEVNTFMFEGYDTTSTCLIFTLLMLALHEDVQKKCYEEVENL
PEDSDDISMFQFNKLVYLECVIKESLRMFPSVPFIGRQCVEETVVNGMVM
PKDTQISIHIYDIMRDPRHFPKPDLFQPDRFLPENTVNRHPFAYVPFSAG
QRNCIGQKFAILEMKVLLAAVIRNFKLLPATQLEDLTFENGIVLRTQENI
KVKLSKRVK*

BS07920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-PA 509 CG14032-PA 1..509 1..509 2657 100 Plus
Cyp4ac3-PA 509 CG14031-PA 1..509 1..509 2142 77 Plus
Cyp4ac2-PB 511 CG17970-PB 6..508 5..507 2068 75.1 Plus
Cyp4p1-PA 513 CG10842-PA 3..512 5..507 1183 47.5 Plus
Cyp4p3-PA 515 CG10843-PA 12..514 14..507 1136 45.3 Plus