Clone Sequence Records
BS07920.5prime Sequence
968 bp (829 high quality bases) assembled on 2006-01-06
> BS07920.5prime
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACCCTGGTAGC
AGCCGAAGCAGATGGTCAGATCGATCATCAGGGTATCTGCGATGAGGTCA
ATACCTTTATGTTCGAGG
BS07920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14032-PA | 1530 | Cyp4ac1-RA | 1..952 | 17..968 | 4735 | 99.8 | Plus |
CG17970-PA | 1494 | Cyp4ac2-RA | 796..913 | 851..968 | 490 | 96.6 | Plus |
CG14031-PA | 1530 | Cyp4ac3-RA | 796..867 | 812..883 | 210 | 91.6 | Plus |
CG14031-PA | 1530 | Cyp4ac3-RA | 902..949 | 918..965 | 190 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1666 | CG14032-RA | 34..985 | 17..968 | 4745 | 99.9 | Plus |
Cyp4ac3-RA | 1606 | CG14031-RA | 49..997 | 17..965 | 1445 | 77.3 | Plus |
Cyp4ac2-RB | 1709 | CG17970-RB | 193..995 | 166..968 | 890 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5264855..5265218 | 605..968 | 1805 | 99.7 | Plus |
2L | 23513712 | 2L | 5264295..5264499 | 218..422 | 1025 | 100 | Plus |
2L | 23513712 | 2L | 5264034..5264235 | 17..218 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 5269360..5269720 | 605..965 | 770 | 80.9 | Plus |
2L | 23513712 | 2L | 5267624..5267741 | 851..968 | 530 | 96.6 | Plus |
2L | 23513712 | 2L | 5264696..5264796 | 505..605 | 505 | 100 | Plus |
2L | 23513712 | 2L | 5264557..5264644 | 422..509 | 425 | 98.9 | Plus |
2L | 23513712 | 2L | 5268546..5268728 | 17..199 | 300 | 77.6 | Plus |
2L | 23513712 | 2L | 5268823..5269000 | 242..419 | 290 | 77.5 | Plus |
2L | 23513712 | 2L | 5266748..5266896 | 272..420 | 250 | 77.9 | Plus |
Blast to na_te.dros performed 2015-02-10 21:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5065..5144 | 647..725 | 118 | 62.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 6521..6600 | 647..725 | 118 | 62.5 | Plus |
BS07920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:53 Download gff for
BS07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 1..952 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:17 Download gff for
BS07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 1..952 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:33 Download gff for
BS07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..985 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:51 Download gff for
BS07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..985 | 17..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:51 Download gff for
BS07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
2L | 5264856..5265218 | 606..968 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:33 Download gff for
BS07920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
arm_2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
arm_2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
arm_2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
arm_2L | 5264856..5265218 | 606..968 | 99 | | Plus |
BS07920.3prime Sequence
828 bp (827 high quality bases) assembled on 2006-01-06
> BS07920.3prime
ATGGTCTAGAAAGCTTTCATTTTACCCTTTTCGATAGCTTCACTTTGATA
TTCTCTTGTGTGCGCAGCACGATTCCGTTCTCAAAAGTGAGATCCTCCAA
CTGGGTGGCGGGCAGGAGTTTAAAGTTCCTAATCACAGCGGCCAGGAGCA
CCTTCATCTCCAGAATGGCAAACTTCTGACCAATGCAATTCCTCTGGCCT
GCACTAAAAGGCACATATGCAAAAGGATGACGATTCACTGTGTTCTCCGG
TAGAAATCTGTCTGGCTGGAACAGATCTGGTTTCGGGAAATGTCGCGGAT
CTCTCATTATGTCGTATATGTGGATGCTGATCTGGGTGTCCTTTGGCATC
ACCATTCCATTCACCACAGTCTCCTCCACGCATTGGCGCCCAATAAATGG
CACTGATGGAAACATTCTCAGCGATTCCTTTATCACACATTCCAAGTAGA
CTAGTTTGTTGAACTGAAACATACTGATGTCATCGCTGTCCTCGGGAAGA
TTTTCCACCTCCTCATAGCACTTCTTCTGGACATCCTCGTGGAGAGCCAG
CATCAATAGGGTAAATATTAGACAGGTGGACGTAGTATCGTAACCCTCGA
ACATAAAGGTATTGACCTCATCGCAGATACCCTGATGATCGATCTGACCA
TCTGCTTCGGCTGCTAACAGGGTATCCAACATGGCGTATCGCTGCTTCCT
GCCAAATTCATCGACTTCTCCAAGTTGTTTCTGCTGGAATTGCTGCCTTT
TTCGTTCGATAATGCGACTGGAGAAGTCGTGAACTATTCGAAGATTCTGC
AAATGCTTTCTATAGTCTCCGTAAACGA
BS07920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14032-PA | 1530 | Cyp4ac1-RA | 719..1530 | 828..17 | 4060 | 100 | Minus |
CG17970-PA | 1494 | Cyp4ac2-RA | 796..999 | 712..509 | 895 | 97.5 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 1393..1487 | 154..60 | 350 | 94.7 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 796..867 | 751..680 | 210 | 91.6 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 902..962 | 645..585 | 205 | 93.4 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 1211..1247 | 336..300 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1666 | CG14032-RA | 752..1563 | 828..17 | 4060 | 100 | Minus |
Cyp4ac2-RB | 1709 | CG17970-RB | 878..1527 | 712..63 | 1600 | 83.1 | Minus |
Cyp4ac3-RA | 1606 | CG14031-RA | 770..1556 | 825..39 | 1595 | 80.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5264985..5265796 | 828..17 | 4060 | 100 | Minus |
2L | 23513712 | 2L | 5267624..5268273 | 712..63 | 1600 | 83.1 | Minus |
2L | 23513712 | 2L | 5269535..5270279 | 783..39 | 1580 | 80.8 | Minus |
3L | 28110227 | 3L | 2476536..2476609 | 150..223 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:56:44 has no hits.
BS07920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:52 Download gff for
BS07920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 720..1530 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:16 Download gff for
BS07920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 720..1530 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:43 Download gff for
BS07920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 753..1573 | 9..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:18 Download gff for
BS07920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 753..1573 | 9..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:18 Download gff for
BS07920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5264986..5265806 | 9..827 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:43 Download gff for
BS07920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5264986..5265806 | 9..827 | 99 | | Minus |
BS07920.complete Sequence
1562 bp (1562 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636030
> BS07920.complete
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACCCTGTTAGC
AGCCGAAGCAGATGGTCAGATCGATCATCAGGGTATCTGCGATGAGGTCA
ATACCTTTATGTTCGAGGGTTACGATACTACGTCCACCTGTCTAATATTT
ACCCTATTGATGCTGGCTCTCCACGAGGATGTCCAGAAGAAGTGCTATGA
GGAGGTGGAAAATCTTCCCGAGGACAGCGATGACATCAGTATGTTTCAGT
TCAACAAACTAGTCTACTTGGAATGTGTGATAAAGGAATCGCTGAGAATG
TTTCCATCAGTGCCATTTATTGGGCGCCAATGCGTGGAGGAGACTGTGGT
GAATGGAATGGTGATGCCAAAGGACACCCAGATCAGCATCCACATATACG
ACATAATGAGAGATCCGCGACATTTCCCGAAACCAGATCTGTTCCAGCCA
GACAGATTTCTACCGGAGAACACAGTGAATCGTCATCCTTTTGCATATGT
GCCTTTTAGTGCAGGCCAGAGGAATTGCATTGGTCAGAAGTTTGCCATTC
TGGAGATGAAGGTGCTCCTGGCCGCTGTGATTAGGAACTTTAAACTCCTG
CCCGCCACCCAGTTGGAGGATCTCACTTTTGAGAACGGAATCGTGCTGCG
CACACAAGAGAATATCAAAGTGAAGCTATCGAAAAGGGTAAAATGAAAGC
TTTCTAGACCAT
BS07920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1530 | CG14032-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Cyp4ac3-RA | 1530 | CG14031-PA | 1..1508 | 17..1524 | 2500 | 77.7 | Plus |
Cyp4ac2-RB | 1536 | CG17970-PB | 153..1487 | 166..1500 | 1935 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1666 | CG14032-RA | 34..1563 | 17..1546 | 7650 | 100 | Plus |
Cyp4ac3-RA | 1606 | CG14031-RA | 49..1556 | 17..1524 | 2500 | 77.7 | Plus |
Cyp4ac2-RB | 1709 | CG17970-RB | 193..1527 | 166..1500 | 1935 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5264855..5265796 | 605..1546 | 4710 | 100 | Plus |
2L | 23513712 | 2L | 5269360..5270279 | 605..1524 | 1855 | 80.1 | Plus |
2L | 23513712 | 2L | 5267624..5268273 | 851..1500 | 1600 | 83.1 | Plus |
2L | 23513712 | 2L | 5264295..5264499 | 218..422 | 1025 | 100 | Plus |
2L | 23513712 | 2L | 5264034..5264235 | 17..218 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 5264696..5264796 | 505..605 | 505 | 100 | Plus |
2L | 23513712 | 2L | 5264557..5264644 | 422..509 | 425 | 98.9 | Plus |
2L | 23513712 | 2L | 5268546..5268728 | 17..199 | 300 | 77.6 | Plus |
2L | 23513712 | 2L | 5268823..5269000 | 242..419 | 290 | 77.5 | Plus |
2L | 23513712 | 2L | 5266748..5266896 | 272..420 | 250 | 77.9 | Plus |
3L | 28110227 | 3L | 2476536..2476609 | 1413..1340 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:55:35 has no hits.
BS07920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:21 Download gff for
BS07920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 1..1530 | 17..1546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:49 Download gff for
BS07920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1573 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:36 Download gff for
BS07920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1556 | 17..1539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:21 Download gff for
BS07920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1573 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:00 Download gff for
BS07920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1556 | 17..1539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:00 Download gff for
BS07920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
2L | 5264856..5265789 | 606..1539 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:36 Download gff for
BS07920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
arm_2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
arm_2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
arm_2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
arm_2L | 5264856..5265789 | 606..1539 | 100 | | Plus |
BS07920.pep Sequence
Translation from 16 to 1545
> BS07920.pep
MWIALLGIPILLAVLTLLLKHINKTYFILSLTKRVRTEDGSPLESKVAIM
PGKTRFGNNLDILNFTPASVFNFVRESTAKAKGQNYLWYFLYAPMYNVVR
PEEAEEVFQSTKLITKNVVYELIRPFLGDGLLISTDHKWHSRRKALTPAF
HFNVLQSFLGIFKEECKKFLNVLEKNLDAELELNQVIPPFTLNNICETAL
GVKLDDMSEGNEYRKAIHAIEEVLIQRVCNPLMYYNWYFFVYGDYRKHLQ
NLRIVHDFSSRIIERKRQQFQQKQLGEVDEFGRKQRYAMLDTLLAAEADG
QIDHQGICDEVNTFMFEGYDTTSTCLIFTLLMLALHEDVQKKCYEEVENL
PEDSDDISMFQFNKLVYLECVIKESLRMFPSVPFIGRQCVEETVVNGMVM
PKDTQISIHIYDIMRDPRHFPKPDLFQPDRFLPENTVNRHPFAYVPFSAG
QRNCIGQKFAILEMKVLLAAVIRNFKLLPATQLEDLTFENGIVLRTQENI
KVKLSKRVK*
BS07920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-PA | 509 | CG14032-PA | 1..509 | 1..509 | 2657 | 100 | Plus |
Cyp4ac3-PA | 509 | CG14031-PA | 1..509 | 1..509 | 2142 | 77 | Plus |
Cyp4ac2-PB | 511 | CG17970-PB | 6..508 | 5..507 | 2068 | 75.1 | Plus |
Cyp4p1-PA | 513 | CG10842-PA | 3..512 | 5..507 | 1183 | 47.5 | Plus |
Cyp4p3-PA | 515 | CG10843-PA | 12..514 | 14..507 | 1136 | 45.3 | Plus |