Clone Sequence Records
BS07922.3prime Sequence
947 bp (862 high quality bases) assembled on 2006-01-06
> BS07922.3prime
ATGGTCTAGAAAGCTTCTAGTTGAGTTTAATGAATGTCTCGTCGTCCAGA
ATCGCGAAATTGTCCTCCCGGAAGTGGAGCAAATTCTCATTGAAGCACTT
GCTGCTTTCGTTGTGCAATTTGGTCATCACAGGCTTGATGTTCTTAACTC
CTGCAGTTTGCGACAAGTCCGTGAAATAGTCGATTTGCTTGGGACCCAGC
ATGTGGGCATGGCGTTTTCTTAGTCCCTCCGCCCACAGTTTGCCCATCCT
ATCGCGGGTGTCCTTGAGCATATCCTCCGTGGACGGCAACTCGTTGGATC
CGTTGTAGTAGCTCATGATGAACCTCGCTTGGATGTCCATCATTTGGGCG
GCACAAACGTAAAACGGCAGTCCGATCAGAGCCATGGATGGGTTCCTGAT
GTTGATGCACTGCTTGTACAGCTCCTGGACGTAGTTGTCCTCCACATAGA
TGCCCGAGTCGACGGTCAGGAAGGGAAAGGCGTACTTGTAACCTGTGCAA
AAGAAGACGGTGTCGAACTCCTGGTACGATCCGTCCACGAAAAAGGCTCC
CTTCTCATCGAGCTCCCGCACATCGGGTTTCTGCTGTACGTTCTCGAAGA
ATGAGTGTTGCCCGATATCGGTCAAGTGGTGACTTATGGTGACCCGATCC
GCCGTTCGGGAAATGATGTTCGACAGGTCCATGCCACTGGGACCAGCTCC
AATGACCAGAACGGATTTACCTTCGAAAACCTCCCTACTTCTGAAGTCGT
GGCTGTGCAGGAACTGCCCTTTAAACCTTTCCATATTCGGAATTTGGCTA
TAATTCGGAGTGTGGTAGTGGCCATTGGCCACCAAGACCTTGTCGAAGTA
CTGGAACTCTATCTTGGTGGGTGACAAGTCTTTGAAAAGTACTTGCCACT
TTGTTTTCCTCTGCAAAACTCGAATCACATAGCTATCGAACTTGATG
BS07922.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3006-PA | 1251 | Fmo-1-RA | 402..1251 | 866..17 | 4250 | 100 | Minus |
CG3006-PA | 1251 | Fmo-1-RA | 321..393 | 947..875 | 365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1454 | CG3006-RA | 425..1356 | 947..16 | 4600 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23963772..23964310 | 723..185 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 23964375..23964543 | 184..16 | 845 | 100 | Minus |
2R | 25286936 | 2R | 23963542..23963721 | 896..717 | 810 | 96.7 | Minus |
2R | 25286936 | 2R | 23963439..23963496 | 947..890 | 290 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 3730..3764 | 4..38 | 112 | 80 | Plus |
BS07922.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:56 Download gff for
BS07922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-PA | 321..1251 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:21 Download gff for
BS07922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3006-PA | 321..1251 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:53 Download gff for
BS07922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 425..1360 | 12..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:57 Download gff for
BS07922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 425..1360 | 12..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:57 Download gff for
BS07922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23964375..23964547 | 12..184 | 98 | | Minus |
2R | 23963439..23963493 | 893..947 | 100 | -> | Minus |
2R | 23963546..23963717 | 721..892 | 98 | -> | Minus |
2R | 23963775..23964310 | 185..720 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:53 Download gff for
BS07922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19850962..19851016 | 893..947 | 100 | -> | Minus |
arm_2R | 19851069..19851240 | 721..892 | 98 | -> | Minus |
arm_2R | 19851298..19851833 | 185..720 | 100 | -> | Minus |
arm_2R | 19851898..19852070 | 12..184 | 98 | | Minus |
BS07922.5prime Sequence
929 bp (838 high quality bases) assembled on 2006-01-06
> BS07922.5prime
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGAAGCTGTACAAGCAGTGCATCAACATCAGGAACCCATCCAT
GGCTCTGATCGGACTGCCGTTTTACGTTT
BS07922.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3006-PA | 1251 | Fmo-1-RA | 1..913 | 17..929 | 4540 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1454 | CG3006-RA | 105..1017 | 17..929 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23963772..23964140 | 561..929 | 1830 | 99.7 | Plus |
2R | 25286936 | 2R | 23963306..23963496 | 204..394 | 955 | 100 | Plus |
2R | 25286936 | 2R | 23963060..23963247 | 17..204 | 940 | 100 | Plus |
2R | 25286936 | 2R | 23963542..23963721 | 388..567 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:30:57 has no hits.
BS07922.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:57 Download gff for
BS07922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:22 Download gff for
BS07922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3006-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:47 Download gff for
BS07922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 100..1017 | 11..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:02 Download gff for
BS07922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 100..1017 | 11..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:02 Download gff for
BS07922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23963055..23963247 | 11..204 | 98 | -> | Plus |
2R | 23963307..23963493 | 205..391 | 100 | -> | Plus |
2R | 23963546..23963717 | 392..563 | 100 | -> | Plus |
2R | 23963775..23964140 | 564..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:47 Download gff for
BS07922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19850578..19850770 | 11..204 | 98 | -> | Plus |
arm_2R | 19850830..19851016 | 205..391 | 100 | -> | Plus |
arm_2R | 19851069..19851240 | 392..563 | 100 | -> | Plus |
arm_2R | 19851298..19851663 | 564..929 | 99 | | Plus |
BS07922.complete Sequence
1283 bp (1283 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636031
> BS07922.complete
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGGAGCTGTACAAGCAGTGCATCAACATCAGGAACCCATCCAT
GGCTCTGATCGGACTGCCGTTTTACGTTTGTGCCGCCCAAATGATGGACA
TCCAAGCGAGGTTCATCATGAGCTACTACAACGGATCCAACGAGTTGCCG
TCCACGGAGGATATGCTCAAGGACACCCGCGATAGGATGGGCAAACTGTG
GGCGGAGGGACTAAGAAAACGCCATGCCCACATGCTGGGTCCCAAGCAAA
TCGACTATTTCACGGACTTGTCGCAAACTGCAGGAGTTAAGAACATCAAG
CCTGTGATGACCAAATTGCACAACGAAAGCAGCAAGTGCTTCAATGAGAA
TTTGCTCCACTTCCGGGAGGACAATTTCGCGATTCTGGACGACGAGACAT
TCATTAAACTCAACTAGAAGCTTTCTAGACCAT
BS07922.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1251 | CG3006-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1454 | CG3006-RA | 105..1356 | 17..1268 | 6260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23963772..23964310 | 561..1099 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 23963306..23963496 | 204..394 | 955 | 100 | Plus |
2R | 25286936 | 2R | 23963060..23963247 | 17..204 | 940 | 100 | Plus |
2R | 25286936 | 2R | 23963542..23963721 | 388..567 | 885 | 99.4 | Plus |
2R | 25286936 | 2R | 23964375..23964543 | 1100..1268 | 845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 3730..3764 | 1280..1246 | 112 | 80 | Minus |
BS07922.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:22 Download gff for
BS07922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:53 Download gff for
BS07922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 81..1341 | 11..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:19 Download gff for
BS07922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 105..1355 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:22 Download gff for
BS07922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 81..1341 | 11..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:40 Download gff for
BS07922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 105..1355 | 17..1267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:40 Download gff for
BS07922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23963546..23963717 | 392..563 | 100 | -> | Plus |
2R | 23963060..23963247 | 17..204 | 100 | -> | Plus |
2R | 23963307..23963493 | 205..391 | 100 | -> | Plus |
2R | 23963775..23964310 | 564..1099 | 100 | -> | Plus |
2R | 23964375..23964542 | 1100..1267 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:19 Download gff for
BS07922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19850583..19850770 | 17..204 | 100 | -> | Plus |
arm_2R | 19850830..19851016 | 205..391 | 100 | -> | Plus |
arm_2R | 19851069..19851240 | 392..563 | 100 | -> | Plus |
arm_2R | 19851298..19851833 | 564..1099 | 100 | -> | Plus |
arm_2R | 19851898..19852065 | 1100..1267 | 100 | | Plus |
BS07922.pep Sequence
Translation from 16 to 1266
> BS07922.pep
MMSVCIIGAGTAGLCCARHSIANGFETTVFELSDRIGGTWVYNEATGAVN
GIDVHSSMYKNLRTNLPKEVMGFPDFEIGANEASYVRSDEICDFLNQYAN
HFDLKKHIKFDSYVIRVLQRKTKWQVLFKDLVTNKIEFQYFDKVLVANGH
YHTPNYSQIPNMERFKGQFLHSHDFRSREVFEGKSVLVIGAGPSGMDLSN
IISRTADRVTISHHLTDIGQHSFFENVQQKPDVRELDEKGAFFVDGSYQE
FDTVFFCTGYKYAFPFLTVDSGIYVEDNYVQELYKQCINIRNPSMALIGL
PFYVCAAQMMDIQARFIMSYYNGSNELPSTEDMLKDTRDRMGKLWAEGLR
KRHAHMLGPKQIDYFTDLSQTAGVKNIKPVMTKLHNESSKCFNENLLHFR
EDNFAILDDETFIKLN*
BS07922.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-PA | 416 | CG3006-PA | 1..416 | 1..416 | 2214 | 100 | Plus |
Fmo-2-PA | 429 | CG3174-PA | 11..423 | 4..414 | 969 | 44.1 | Plus |