Clone BS07922 Report

Search the DGRC for BS07922

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptFmo-1-RA
Protein status:BS07922.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07922.3prime Sequence

947 bp (862 high quality bases) assembled on 2006-01-06

> BS07922.3prime
ATGGTCTAGAAAGCTTCTAGTTGAGTTTAATGAATGTCTCGTCGTCCAGA
ATCGCGAAATTGTCCTCCCGGAAGTGGAGCAAATTCTCATTGAAGCACTT
GCTGCTTTCGTTGTGCAATTTGGTCATCACAGGCTTGATGTTCTTAACTC
CTGCAGTTTGCGACAAGTCCGTGAAATAGTCGATTTGCTTGGGACCCAGC
ATGTGGGCATGGCGTTTTCTTAGTCCCTCCGCCCACAGTTTGCCCATCCT
ATCGCGGGTGTCCTTGAGCATATCCTCCGTGGACGGCAACTCGTTGGATC
CGTTGTAGTAGCTCATGATGAACCTCGCTTGGATGTCCATCATTTGGGCG
GCACAAACGTAAAACGGCAGTCCGATCAGAGCCATGGATGGGTTCCTGAT
GTTGATGCACTGCTTGTACAGCTCCTGGACGTAGTTGTCCTCCACATAGA
TGCCCGAGTCGACGGTCAGGAAGGGAAAGGCGTACTTGTAACCTGTGCAA
AAGAAGACGGTGTCGAACTCCTGGTACGATCCGTCCACGAAAAAGGCTCC
CTTCTCATCGAGCTCCCGCACATCGGGTTTCTGCTGTACGTTCTCGAAGA
ATGAGTGTTGCCCGATATCGGTCAAGTGGTGACTTATGGTGACCCGATCC
GCCGTTCGGGAAATGATGTTCGACAGGTCCATGCCACTGGGACCAGCTCC
AATGACCAGAACGGATTTACCTTCGAAAACCTCCCTACTTCTGAAGTCGT
GGCTGTGCAGGAACTGCCCTTTAAACCTTTCCATATTCGGAATTTGGCTA
TAATTCGGAGTGTGGTAGTGGCCATTGGCCACCAAGACCTTGTCGAAGTA
CTGGAACTCTATCTTGGTGGGTGACAAGTCTTTGAAAAGTACTTGCCACT
TTGTTTTCCTCTGCAAAACTCGAATCACATAGCTATCGAACTTGATG

BS07922.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3006-PA 1251 Fmo-1-RA 402..1251 866..17 4250 100 Minus
CG3006-PA 1251 Fmo-1-RA 321..393 947..875 365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1454 CG3006-RA 425..1356 947..16 4600 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23963772..23964310 723..185 2695 100 Minus
2R 25286936 2R 23964375..23964543 184..16 845 100 Minus
2R 25286936 2R 23963542..23963721 896..717 810 96.7 Minus
2R 25286936 2R 23963439..23963496 947..890 290 100 Minus
Blast to na_te.dros performed 2015-02-11 16:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 3730..3764 4..38 112 80 Plus

BS07922.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:56 Download gff for BS07922.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-PA 321..1251 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:21 Download gff for BS07922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3006-PA 321..1251 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:53 Download gff for BS07922.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 425..1360 12..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:57 Download gff for BS07922.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 425..1360 12..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:57 Download gff for BS07922.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23964375..23964547 12..184 98   Minus
2R 23963439..23963493 893..947 100 -> Minus
2R 23963546..23963717 721..892 98 -> Minus
2R 23963775..23964310 185..720 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:53 Download gff for BS07922.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19850962..19851016 893..947 100 -> Minus
arm_2R 19851069..19851240 721..892 98 -> Minus
arm_2R 19851298..19851833 185..720 100 -> Minus
arm_2R 19851898..19852070 12..184 98   Minus

BS07922.5prime Sequence

929 bp (838 high quality bases) assembled on 2006-01-06

> BS07922.5prime
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGAAGCTGTACAAGCAGTGCATCAACATCAGGAACCCATCCAT
GGCTCTGATCGGACTGCCGTTTTACGTTT

BS07922.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3006-PA 1251 Fmo-1-RA 1..913 17..929 4540 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1454 CG3006-RA 105..1017 17..929 4550 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23963772..23964140 561..929 1830 99.7 Plus
2R 25286936 2R 23963306..23963496 204..394 955 100 Plus
2R 25286936 2R 23963060..23963247 17..204 940 100 Plus
2R 25286936 2R 23963542..23963721 388..567 885 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 21:30:57 has no hits.

BS07922.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:57 Download gff for BS07922.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:22 Download gff for BS07922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3006-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:47 Download gff for BS07922.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 100..1017 11..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:02 Download gff for BS07922.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 100..1017 11..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:02 Download gff for BS07922.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23963055..23963247 11..204 98 -> Plus
2R 23963307..23963493 205..391 100 -> Plus
2R 23963546..23963717 392..563 100 -> Plus
2R 23963775..23964140 564..929 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:47 Download gff for BS07922.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19850578..19850770 11..204 98 -> Plus
arm_2R 19850830..19851016 205..391 100 -> Plus
arm_2R 19851069..19851240 392..563 100 -> Plus
arm_2R 19851298..19851663 564..929 99   Plus

BS07922.complete Sequence

1283 bp (1283 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636031

> BS07922.complete
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGGAGCTGTACAAGCAGTGCATCAACATCAGGAACCCATCCAT
GGCTCTGATCGGACTGCCGTTTTACGTTTGTGCCGCCCAAATGATGGACA
TCCAAGCGAGGTTCATCATGAGCTACTACAACGGATCCAACGAGTTGCCG
TCCACGGAGGATATGCTCAAGGACACCCGCGATAGGATGGGCAAACTGTG
GGCGGAGGGACTAAGAAAACGCCATGCCCACATGCTGGGTCCCAAGCAAA
TCGACTATTTCACGGACTTGTCGCAAACTGCAGGAGTTAAGAACATCAAG
CCTGTGATGACCAAATTGCACAACGAAAGCAGCAAGTGCTTCAATGAGAA
TTTGCTCCACTTCCGGGAGGACAATTTCGCGATTCTGGACGACGAGACAT
TCATTAAACTCAACTAGAAGCTTTCTAGACCAT

BS07922.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1251 CG3006-PA 1..1251 17..1267 6255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1454 CG3006-RA 105..1356 17..1268 6260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23963772..23964310 561..1099 2695 100 Plus
2R 25286936 2R 23963306..23963496 204..394 955 100 Plus
2R 25286936 2R 23963060..23963247 17..204 940 100 Plus
2R 25286936 2R 23963542..23963721 388..567 885 99.4 Plus
2R 25286936 2R 23964375..23964543 1100..1268 845 100 Plus
Blast to na_te.dros performed 2014-11-27 20:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 3730..3764 1280..1246 112 80 Minus

BS07922.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:22 Download gff for BS07922.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 1..1251 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:53 Download gff for BS07922.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 81..1341 11..1272 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:19 Download gff for BS07922.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 105..1355 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:22 Download gff for BS07922.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 81..1341 11..1272 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:40 Download gff for BS07922.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 105..1355 17..1267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:40 Download gff for BS07922.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23963546..23963717 392..563 100 -> Plus
2R 23963060..23963247 17..204 100 -> Plus
2R 23963307..23963493 205..391 100 -> Plus
2R 23963775..23964310 564..1099 100 -> Plus
2R 23964375..23964542 1100..1267 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:19 Download gff for BS07922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19850583..19850770 17..204 100 -> Plus
arm_2R 19850830..19851016 205..391 100 -> Plus
arm_2R 19851069..19851240 392..563 100 -> Plus
arm_2R 19851298..19851833 564..1099 100 -> Plus
arm_2R 19851898..19852065 1100..1267 100   Plus

BS07922.pep Sequence

Translation from 16 to 1266

> BS07922.pep
MMSVCIIGAGTAGLCCARHSIANGFETTVFELSDRIGGTWVYNEATGAVN
GIDVHSSMYKNLRTNLPKEVMGFPDFEIGANEASYVRSDEICDFLNQYAN
HFDLKKHIKFDSYVIRVLQRKTKWQVLFKDLVTNKIEFQYFDKVLVANGH
YHTPNYSQIPNMERFKGQFLHSHDFRSREVFEGKSVLVIGAGPSGMDLSN
IISRTADRVTISHHLTDIGQHSFFENVQQKPDVRELDEKGAFFVDGSYQE
FDTVFFCTGYKYAFPFLTVDSGIYVEDNYVQELYKQCINIRNPSMALIGL
PFYVCAAQMMDIQARFIMSYYNGSNELPSTEDMLKDTRDRMGKLWAEGLR
KRHAHMLGPKQIDYFTDLSQTAGVKNIKPVMTKLHNESSKCFNENLLHFR
EDNFAILDDETFIKLN*

BS07922.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-PA 416 CG3006-PA 1..416 1..416 2214 100 Plus
Fmo-2-PA 429 CG3174-PA 11..423 4..414 969 44.1 Plus