Clone Sequence Records
BS07923.3prime Sequence
928 bp (797 high quality bases) assembled on 2006-01-06
> BS07923.3prime
ATGGTCTAGAAAGCTTTCATCTGAACAATCTGAGGCGGAAGGACATGATG
TAGAACGCCAGGATGCGCAGGAAGACCAAAACGCCGAACAGAAAGATGAG
GGCAAGTGTATAGTTTCCGTTGGCCATGTCCAGACTTTTGAGTATGAACT
GGGGGTGCCTCAGGTGGCAGTAGAGCTCATTGCAAGCCAGGGGCTCGCGA
TCGTATCCAAAAATGGCCATCGTGGCCCCTTCCAGACTGTACTTGAGGAA
CGATATGTCAAACATCCAGCGCAAAAACACCGGAGCGTCCTTCTCCATCA
GAAAGAACCCGCTAAACTGGAGGAACGGGCAGATGAAGAAGGGTCCCAGA
ATGGAGCCCAGCTTGAGGCTCAGTGCTGCTCCCACCGCCAAGCCAATGCT
CTGCGAGACCAGAGCCGTAACGAACACAATCAGGAAGAACATTCCGAATC
GCCAGAGCTCCAGCGGCTGTTGGGTCATCAGATATGTGGGCACTATGAAC
AGGGCACTGCAAATGATCTGGATGGGCAGGTCGGCTAGGGTGATGGCTAC
GTAATACGCCCGCAGGGAATACCAGCGATTGAAGTGCTCCCGCGACACAA
TGGGGAACTCCAGCGGAAACTTCACCAGTATGCCCGAGAACGCACAGTAC
ATGATGAACATGATTGTGTAGAAGAGGTATCGGAAGATATTTAACGTCTG
GGCGGCATCGTTGCCGATCCCAAAGTACAGCGTTCCTATTAGGATGCCTG
TGATTAGGTGAATAGCGAAGCGCATCGTAGTCAACGAACTGTCCCGCCAA
ATTAGCAGGAATGTCCTCACAAGCAGAATGCTCAACTGTCGGTAGAACGG
AGTGGCGTAGATGTTCTGTCTTTTGCACAGATGCGATGGATCCAACTCTA
TAGCTGGCCTGGATTTATTTTTCTTCTT
BS07923.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-PA | 2427 | CG9663-RA | 1516..2427 | 928..17 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-RA | 3062 | CG9663-RA | 1739..2650 | 928..17 | 4560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3295338..3295939 | 17..618 | 3010 | 100 | Plus |
| 2L | 23513712 | 2L | 3295994..3296303 | 619..928 | 1550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:23:31 has no hits.
BS07923.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:27:58 Download gff for
BS07923.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-PA | 1516..2427 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:23 Download gff for
BS07923.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-PA | 1516..2427 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:10 Download gff for
BS07923.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 1739..2650 | 17..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:10 Download gff for
BS07923.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 1739..2650 | 17..928 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:10 Download gff for
BS07923.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3295331..3295939 | 13..618 | 99 | <- | Plus |
| 2L | 3295994..3296303 | 619..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:10 Download gff for
BS07923.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3295331..3295939 | 13..618 | 99 | <- | Plus |
| arm_2L | 3295994..3296303 | 619..928 | 100 | | Plus |
BS07923.5prime Sequence
965 bp (772 high quality bases) assembled on 2006-01-06
> BS07923.5prime
GAAGTTATCAGTCGACATGTCCAGTTGGAGTTTGGCCAGTGCCGTGTCGC
CAAATGTCACCGGTGGCGATGTCATCCGGTTGAACCACCTAAAGTCCAGC
TCGGAAACGCATCTGCCATCGCGGGGATCTGGAACGGGGTCTGGAGCACT
ACCACGTCCCACGACACCCGTGCCCTCCAAGAAACTGTCGTCCAAACGAC
CTCCACACTTGACCCTCAACATAAAGGCCAAGTCCCACGATGCTCCGCTG
GCCGAGACGGAAAACACGGTTCTCTCGACCAGTGAATCTGTCTATGGAAC
TCCGCTGGGCGCCACACCCGTTTCGTCACCTGCCAACCAAAGTCAGCGCA
GTCAGGCGAGCCAGCATAGTGACGAAAGCCGCAACACCAGCAGCACCGCC
ACCAGCGGAGGATCCATATTCCCCCACGAACAGTACAAAACCATCAAGAA
GATCAACATTGGCTTCGAGAATATACGCTACACTACCAAATTCGGAGTCT
TCCAGAGGGAAACCAAGGATGTGCTAATGGGTTTAACGGGCTACTTCAAG
TCGGGAGAACTTAGTGCCGTTATTGGACCCTCTGGAGCTGGAAAGAGTAC
TCTGCTCAACATTCTGTCAGGATACACAACATATGGCTTTACGGGGGATT
TCCGGGTCAATGGCAACAGGCGGGATTTAAAGGCCTTCAAGTCGAACGTG
GCGTTCATCCGCCAGGATACGAGTCTTCAGGCCTTTCTCTCCGTCAAGGA
GGCGATGCATTTTGCAGCCAATTTGAAAATCGGCACTCACATGACACATA
GCGAGAAAAGAGAGCGGGTAAAGTGCATTCTGGAGGCCATCGGTATGTAC
GAAAACCGGCATACCAGGACGGGGCAGCTAAGTGGAAGTCAGAAGAACCG
TCTTGCTATTGCACTGGAACTGGTGAACAACCCACCCGGTGCTGATCCTG
GACGAACCTACAACT
BS07923.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-PA | 2427 | CG9663-RA | 1..920 | 17..936 | 4550 | 99.7 | Plus |
| CG9663-PA | 2427 | CG9663-RA | 919..948 | 936..965 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-RA | 3062 | CG9663-RA | 220..1171 | 13..965 | 4710 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3301123..3301619 | 509..13 | 2485 | 100 | Minus |
| 2L | 23513712 | 2L | 3297053..3297388 | 964..628 | 1605 | 99.1 | Minus |
| 2L | 23513712 | 2L | 3297447..3297565 | 627..509 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:44:38 has no hits.
BS07923.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:00 Download gff for
BS07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:24 Download gff for
BS07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:53 Download gff for
BS07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 213..1171 | 1..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:40 Download gff for
BS07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 213..1171 | 1..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:40 Download gff for
BS07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3297051..3297388 | 628..965 | 98 | <- | Minus |
| 2L | 3297447..3297564 | 510..627 | 100 | <- | Minus |
| 2L | 3301123..3301626 | 1..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:53 Download gff for
BS07923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3297447..3297564 | 510..627 | 100 | <- | Minus |
| arm_2L | 3297051..3297388 | 628..965 | 98 | <- | Minus |
| arm_2L | 3301123..3301626 | 1..509 | 99 | | Minus |
BS07923.complete Sequence
2459 bp assembled on 2008-01-03
GenBank Submission: FJ636032
> BS07923.complete
GAAGTTATCAGTCGACATGTCCAGTTGGAGTTTGGCCAGTGCCGTGTCGC
CAAATGTCACCGGTGGCGATGTCATCCGGTTGAACCACCTAAAGTCCAGC
TCGGAAACGCATCTGCCATCGCGGGGATCTGGAACGGGGTCTGGAGCACT
ACCACGTCCCACGACACCCGTGCCCTCCAAGAAACTGTCGTCCAAACGAC
CTCCACACTTGACCCTCAACATAAAGGCCAAGTCCCACGATGCTCCGCTG
GCCGAGACGGAAAACACGGTTCTCTCGACCAGTGAATCTGTCTATGGAAC
TCCGCTGGGCGCCACACCCGTTTCGTCACCTGCCAACCAAAGTCAGCGCA
GTCAGGCGAGCCAGCATAGTGACGAAAGCCGCAACACCAGCAGCACCGCC
ACCAGCGGAGGATCCATATTCCCCCACGAACAGTACAAAACCATCAAGAA
GATCAACATTGGCTTCGAGAATATACGCTACACTACCAAATTCGGAGTCT
TCCAGAGGGAAACCAAGGATGTGCTAATGGGTTTAACGGGCTACTTCAAG
TCGGGAGAACTTAGTGCCGTTATTGGACCCTCTGGAGCTGGAAAGAGTAC
TCTGCTCAACATTCTGTCAGGATACACAACATATGGCTTTACGGGGGATT
TCCGGGTCAATGGCAACAGGCGGGATTTAAAGGCCTTCAAGTCGAACGTG
GCGTTCATCCGCCAGGATACGAGTCTTCAGGCCTTTCTCTCCGTCAAGGA
GGCGATGCATTTTGCAGCCAATTTGAAAATCGGCACTCACATGACACATA
GCGAGAAAAGAGAGCGGGTAAAGTGCATTCTGGAGGCCATCGGTATGTAC
GAAAACCGGCATACCAGGACGGGGCAGCTAAGTGGAGGTCAGAAGAAGCG
TCTTGCTATTGCACTGGAACTGGTGAACAACCCACCGGTGCTGATCCTGG
ACGAACCTACAACTGGCTTGGATAGTTTCACCTCCAATCAGCTGATAAAT
TTGCTAAAGAAGCTCGCCATCGAGGGACGCACAGTCATCTGCACAATCCA
CCAGCCAAGTGCCTTGACCTTCGCCATGTTCGATCATCTGTATGCCATTG
GCGAGGGCAAGTGCATCTACGCAGGAGGAGCCCAAAACCTATTGCCCTTC
CTGGGCGCCCTCAATTTGCACTGCCCGGAGTCCTACAATCCAGCGGATTA
CTTAATGGAAATAGCAACTCATGACTATGACACGGCGGAAGACAATCAGC
TGGAGAAGCTGGTGGCCCTGATGGACAATGGTCGCAATGAGGATTACAGA
CAGAGCAAGACTGCGCGAGTGGCCCAACTGGCGGCCATGAAGAAAGTTGA
CCAACTTATGGCAGCGGGACTGATCACACCGGTGACAGCACCTGTGATGT
CCACATCCGTGCCAGCGCATTTCATGCAGGGCAACACCTTCAAGCCACTC
ACCCCCATCAATGAACTGTCCTCCCGAGTGTGGGACAGCCAAACGGCGGG
AATCGGAAACGCTGGCAGCTGTTGTAAGCCGAAGAAGAAAAATAAATCCA
GGCCAGCTATAGAGTTGGATCCATCGCATCTGTGCAAAAGACAGAACATC
TACGCCACTCCGTTCTACCGACAGTTGAGCATTCTGCTTGTGAGGACATT
CCTGCTAATTTGGCGGGACAGTTCGTTGACTACGATGCGCTTCGCTATTC
ACCTAATCACAGGCATCCTAATAGGAACGCTGTACTTTGGGATCGGCAAC
GATGCCGCCCAGACGTTAAATATCTTCCGATACCTCTTCTACACAATCAT
GTTCATCATGTACTGTGCGTTCTCGGGCATACTGGTGAAGTTTCCGCTGG
AGTTCCCCATTGTGTCGCGGGAGCACTTCAATCGCTGGTATTCCCTGCGG
GCGTATTACGTAGCCATCACCCTAGCCGACCTGCCCATCCAGATCATTTG
CAGTGCCCTGTTCATAGTGCCCACATATCTGATGACCCAACAGCCGCTGG
AGCTCTGGCGATTCGGAATGTTCTTCCTGATTGTGTTCGTTACGGCTCTG
GTCTCGCAGAGCATTGGCTTGGCGGTGGGAGCAGCACTGAGCCTCAAGCT
GGGCTCCATTCTGGGACCCTTCTTCATCTGCCCGTTCCTCCAGTTTAGCG
GGTTCTTTCTGATGGAGAAGGACGCTCCGGTGTTTTTGCGCTGGATGTTT
GACATATCGTTCCTCAAGTACAGTCTGGAAGGGGCCACGATGGCCATTTT
TGGATACGATCGCGAGCCCCTGGCTTGCAATGAGCTCTACTGCCACCTGA
GGCACCCCCAGTTCATACTCAAAAGTCTGGACATGGCCAACGGAAACTAT
ACACTTGCCCTCATCTTTCTGTTCGGCGTTTTGGTCTTCCTGCGCATCCT
GGCGTTCTACATCATGTCCTTCCGCCTCAGATTGTTCAGATGAAAGCTTT
CTAGACCAT
BS07923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-RA | 2427 | CG9663-PA | 1..2427 | 17..2443 | 12135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-RA | 3062 | CG9663-RA | 220..2650 | 13..2443 | 12155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3295338..3295939 | 2443..1842 | 3010 | 100 | Minus |
| 2L | 23513712 | 2L | 3301123..3301619 | 509..13 | 2485 | 100 | Minus |
| 2L | 23513712 | 2L | 3295994..3296486 | 1841..1349 | 2465 | 100 | Minus |
| 2L | 23513712 | 2L | 3297053..3297388 | 963..628 | 1680 | 100 | Minus |
| 2L | 23513712 | 2L | 3296756..3296994 | 1202..964 | 1195 | 100 | Minus |
| 2L | 23513712 | 2L | 3296544..3296690 | 1349..1203 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 3297447..3297565 | 627..509 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:47:19 has no hits.
BS07923.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:32 Download gff for
BS07923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 1..2427 | 17..2443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:50 Download gff for
BS07923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 223..2648 | 17..2442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:05 Download gff for
BS07923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 224..2649 | 17..2442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:32 Download gff for
BS07923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 212..2649 | 1..2443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:23 Download gff for
BS07923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9663-RA | 224..2649 | 17..2442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:23 Download gff for
BS07923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3295339..3295939 | 1842..2442 | 100 | <- | Minus |
| 2L | 3295994..3296485 | 1350..1841 | 100 | <- | Minus |
| 2L | 3296544..3296690 | 1203..1349 | 100 | <- | Minus |
| 2L | 3296756..3296994 | 964..1202 | 100 | <- | Minus |
| 2L | 3297053..3297388 | 628..963 | 100 | <- | Minus |
| 2L | 3297447..3297564 | 510..627 | 100 | <- | Minus |
| 2L | 3301123..3301615 | 17..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:05 Download gff for
BS07923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3295339..3295939 | 1842..2442 | 100 | <- | Minus |
| arm_2L | 3296544..3296690 | 1203..1349 | 100 | <- | Minus |
| arm_2L | 3295994..3296485 | 1350..1841 | 100 | <- | Minus |
| arm_2L | 3296756..3296994 | 964..1202 | 100 | <- | Minus |
| arm_2L | 3297053..3297388 | 628..963 | 100 | <- | Minus |
| arm_2L | 3297447..3297564 | 510..627 | 100 | <- | Minus |
| arm_2L | 3301123..3301615 | 17..509 | 100 | | Minus |
BS07923.pep Sequence
Translation from 16 to 2442
> BS07923.pep
MSSWSLASAVSPNVTGGDVIRLNHLKSSSETHLPSRGSGTGSGALPRPTT
PVPSKKLSSKRPPHLTLNIKAKSHDAPLAETENTVLSTSESVYGTPLGAT
PVSSPANQSQRSQASQHSDESRNTSSTATSGGSIFPHEQYKTIKKINIGF
ENIRYTTKFGVFQRETKDVLMGLTGYFKSGELSAVIGPSGAGKSTLLNIL
SGYTTYGFTGDFRVNGNRRDLKAFKSNVAFIRQDTSLQAFLSVKEAMHFA
ANLKIGTHMTHSEKRERVKCILEAIGMYENRHTRTGQLSGGQKKRLAIAL
ELVNNPPVLILDEPTTGLDSFTSNQLINLLKKLAIEGRTVICTIHQPSAL
TFAMFDHLYAIGEGKCIYAGGAQNLLPFLGALNLHCPESYNPADYLMEIA
THDYDTAEDNQLEKLVALMDNGRNEDYRQSKTARVAQLAAMKKVDQLMAA
GLITPVTAPVMSTSVPAHFMQGNTFKPLTPINELSSRVWDSQTAGIGNAG
SCCKPKKKNKSRPAIELDPSHLCKRQNIYATPFYRQLSILLVRTFLLIWR
DSSLTTMRFAIHLITGILIGTLYFGIGNDAAQTLNIFRYLFYTIMFIMYC
AFSGILVKFPLEFPIVSREHFNRWYSLRAYYVAITLADLPIQIICSALFI
VPTYLMTQQPLELWRFGMFFLIVFVTALVSQSIGLAVGAALSLKLGSILG
PFFICPFLQFSGFFLMEKDAPVFLRWMFDISFLKYSLEGATMAIFGYDRE
PLACNELYCHLRHPQFILKSLDMANGNYTLALIFLFGVLVFLRILAFYIM
SFRLRLFR*
BS07923.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9663-PA | 808 | CG9663-PA | 1..808 | 1..808 | 4169 | 100 | Plus |
| CG3164-PC | 699 | CG3164-PC | 11..699 | 120..808 | 1305 | 40.6 | Plus |
| CG3164-PA | 699 | CG3164-PA | 11..699 | 120..808 | 1305 | 40.6 | Plus |
| CG3164-PD | 698 | CG3164-PD | 2..698 | 109..808 | 1303 | 39.9 | Plus |
| CG3164-PB | 698 | CG3164-PB | 2..698 | 109..808 | 1303 | 39.9 | Plus |
