Clone Sequence Records
BS07927.3prime Sequence
870 bp (746 high quality bases) assembled on 2006-01-06
> BS07927.3prime
ATGGTCTAGAAAGCTTTCAGAGGGGCGGCTTGTAGACTTCAATAGCAGGC
GTGAGCATATCCACTCGCGTTGATATCGAAGTATCACTGAGATTCTCGAT
GCGCGGCCTTCGGCACTGCGGCCGATTGCGTCGGTGGCTGCGATCCTTCT
TGCAGCGGCAGTCGCAGTGCATGATGCACAGGGCAATGGACGAGATGACC
GTTATCACAAAGGGCACCGCGAAGAAGTGAATGATCATGGCCACCTGGTC
GTCGTGGTTGTACGATGTCAGCACCACCGTCTTGTTCTTTCGCGAATAGA
AGCACGGAAAGATGGCACCCTCGATGCCGTAGTAACCGTTAAAGTTCTTA
CACGTCACCGATGGCGGATAGCCGCATCCCTTGATATTGACAAGCAGTGT
CGCCTCGCCGGACTGCTCCATATCGGACGTAAAGTTGCTATAATCGGTCA
TATTCTCCGGTATCGTAATGTTCTGCTCAATGAACGTCACATAGATATGC
ACGCAGCGGTACAAATCGGAGGTGCAGCCCTCGCGACACGAACTCCACGA
ACAGTTGAATATACCCACTAGATCCTCGCGACGCGTCGTCGTGCACAGCG
TTGGCTTCTCGATAAAATCGTGGCTAAGCGTCGATATCGCCGGATCCACA
TAGAGCGGTACGAGGAAGAGCAGCGATGCCCCGGCGGTCACCGAGAAGAA
GGCCAGTGTCGAGGTTCCATAGAAACGCGCACGTTCCCGCCACGAACGAA
AGCGCCGATTGCCATTTTTCTTTTTCGGAGCCAGTTCTCGGATTTTACGT
AACCGTAGCTCTTGTTGTTGCTGCTCGAGTAGTAATTCCGAACTGCCACT
CCTCATGTCGACTGATAACT
BS07927.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12806-PA | 840 | CG12806-RA | 1..840 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 4539 | CG12806-RB | 1055..1894 | 856..17 | 4200 | 100 | Minus |
| Teh1-RA | 4539 | CG12806-RA | 1055..1894 | 856..17 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9864969..9865738 | 87..856 | 3850 | 100 | Plus |
| 3R | 32079331 | 3R | 9828726..9828798 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:32:04 has no hits.
BS07927.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:07 Download gff for
BS07927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:34 Download gff for
BS07927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:51:06 Download gff for
BS07927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1894 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:42:16 Download gff for
BS07927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1894 | 17..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:42:16 Download gff for
BS07927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9828726..9828795 | 17..86 | 100 | <- | Plus |
| 3R | 9864969..9865745 | 87..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:51:06 Download gff for
BS07927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5654448..5654517 | 17..86 | 100 | <- | Plus |
| arm_3R | 5690691..5691467 | 87..864 | 99 | | Plus |
BS07927.5prime Sequence
870 bp (757 high quality bases) assembled on 2006-01-06
> BS07927.5prime
GAAGTTATCAGTCGACATGAGGAGTGGCAGTTCGGAATTACTACTCGAGC
AGCAACAACAAGAGCTACGGTTACGTAAAATCCGAGAACTGGCTCCGAAA
AAGAAAAATGGCAATCGGCGCTTTCGTTCGTGGCGGGAACGTGCGCGTTT
CTATGGAACCTCGACACTGGCCTTCTTCTCGGTGACCGCCGGGGCATCGC
TGCTCTTCCTCGTACCGCTCTATGTGGATCCGGCGATATCGACGCTTAGC
CACGATTTTATCGAGAAGCCAACGCTGTGCACGACGACGCGTCGCGAGGA
TCTAGTGGGTATATTCAACTGTTCGTGGAGTTCGTGTCGCGAGGGCTGCA
CCTCCGATTTGTACCGCTGCGTGCATATCTATGTGACGTTCATTGAGCAG
AACATTACGATACCGGAGAATATGACCGATTATAGCAACTTTACGTCCGA
TATGGAGCAGTCCGGCGAGGCGACACTGCTTGTCAATATCAAGGGATGCG
GCTATCCGCCATCGGTGACGTGTAAGAACTTTAACGGTTACTACGGCATC
GAGGGTGCCATCTTTCCGTGCTTCTATTCGCGAAAGAACAAGACGGTGGT
GCTGACATCGTACAACCACGACGACCAGGTGGCCATGATCATTCACTTCT
TCGCGGTGCCCTTTGTGATAACGGTCATCTCGTCCATTGCCCTGTGCATC
ATGCACTGCGACTGCCGCTGCAAGAAGGATCGCAGCCACCGACGCAATCG
GCCGCAGTGCCGAAGGCCGCGCATCGAGAATCTCAGTGATACTTCGATAT
CAACGCGAGTGGATATGCTCACGCCTGCTATTGAAGTCTACAAGCCGCCC
CTCTGAAAGCTTTCTAGACC
BS07927.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12806-PA | 840 | CG12806-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 4539 | CG12806-RB | 1055..1894 | 17..856 | 4200 | 100 | Plus |
| Teh1-RA | 4539 | CG12806-RA | 1055..1894 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9864969..9865738 | 786..17 | 3850 | 100 | Minus |
| 3R | 32079331 | 3R | 9828726..9828798 | 856..784 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:43:41 has no hits.
BS07927.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:08 Download gff for
BS07927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:35 Download gff for
BS07927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:44 Download gff for
BS07927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1894 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:34 Download gff for
BS07927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1894 | 9..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:34 Download gff for
BS07927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9828726..9828795 | 787..856 | 100 | <- | Minus |
| 3R | 9864969..9865745 | 9..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:44 Download gff for
BS07927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5654448..5654517 | 787..856 | 100 | <- | Minus |
| arm_3R | 5690691..5691467 | 9..786 | 99 | | Minus |
BS07927.complete Sequence
872 bp (872 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636034
> BS07927.complete
GAAGTTATCAGTCGACATGAGGAGTGGCAGTTCGGAATTACTACTCGAGC
AGCAACAACAAGAGCTACGGTTACGTAAAATCCGAGAACTGGCTCCGAAA
AAGAAAAATGGCAATCGGCGCTTTCGTTCGTGGCGGGAACGTGCGCGTTT
CTATGGAACCTCGACACTGGCCTTCTTCTCGGTGACCGCCGGGGCATCGC
TGCTCTTCCTCGTACCGCTCTATGTGGATCCGGCGATATCGACGCTTAGC
CACGATTTTATCGAGAAGCCAACGCTGTGCACGACGACGCGTCGCGAGGA
TCTAGTGGGTATATTCAACTGTTCGTGGAGTTCGTGTCGCGAGGGCTGCA
CCTCCGATTTGTACCGCTGCGTGCATATCTATGTGACGTTCATTGAGCAG
AACATTACGATACCGGAGAATATGACCGATTATAGCAACTTTACGTCCGA
TATGGAGCAGTCCGGCGAGGCGACACTGCTTGTCAATATCAAGGGATGCG
GCTATCCGCCATCGGTGACGTGTAAGAACTTTAACGGTTACTACGGCATC
GAGGGTGCCATCTTTCCGTGCTTCTATTCGCGAAAGAACAAGACGGTGGT
GCTGACATCGTACAACCACGACGACCAGGTGGCCATGATCATTCACTTCT
TCGCGGTGCCCTTTGTGATAACGGTCATCTCGTCCATTGCCCTGTGCATC
ATGCACTGCGACTGCCGCTGCAAGAAGGATCGCAGCCACCGACGCAATCG
GCCGCAGTGCCGAAGGCCGCGCATCGAGAATCTCAGTGATACTTCGATAT
CAACGCGAGTGGATATGCTCACGCCTGCTATTGAAGTCTACAAGCCGCCC
CTCTGAAAGCTTTCTAGACCAT
BS07927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 900 | CG12806-PB | 1..840 | 17..856 | 4200 | 100 | Plus |
| Teh1-RA | 840 | CG12806-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 4539 | CG12806-RB | 1055..1894 | 17..856 | 4200 | 100 | Plus |
| Teh1-RA | 4539 | CG12806-RA | 1055..1894 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9864969..9865738 | 786..17 | 3850 | 100 | Minus |
| 3R | 32079331 | 3R | 9828726..9828798 | 856..784 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:35:09 has no hits.
BS07927.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:23 Download gff for
BS07927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:24 Download gff for
BS07927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1055..1893 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:24 Download gff for
BS07927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1055..1893 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:23 Download gff for
BS07927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1894 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:16 Download gff for
BS07927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1055..1893 | 17..855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:16 Download gff for
BS07927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9828727..9828795 | 787..855 | 100 | <- | Minus |
| 3R | 9864969..9865738 | 17..786 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:24 Download gff for
BS07927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5654449..5654517 | 787..855 | 100 | <- | Minus |
| arm_3R | 5690691..5691460 | 17..786 | 100 | | Minus |
BS07927.pep Sequence
Translation from 16 to 855
> BS07927.pep
MRSGSSELLLEQQQQELRLRKIRELAPKKKNGNRRFRSWRERARFYGTST
LAFFSVTAGASLLFLVPLYVDPAISTLSHDFIEKPTLCTTTRREDLVGIF
NCSWSSCREGCTSDLYRCVHIYVTFIEQNITIPENMTDYSNFTSDMEQSG
EATLLVNIKGCGYPPSVTCKNFNGYYGIEGAIFPCFYSRKNKTVVLTSYN
HDDQVAMIIHFFAVPFVITVISSIALCIMHCDCRCKKDRSHRRNRPQCRR
PRIENLSDTSISTRVDMLTPAIEVYKPPL*
BS07927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-PA | 279 | CG12806-PA | 1..279 | 1..279 | 1484 | 100 | Plus |
| Teh1-PB | 299 | CG12806-PB | 1..279 | 1..279 | 1484 | 100 | Plus |
| Teh2-PA | 309 | CG15004-PA | 82..277 | 41..237 | 321 | 37 | Plus |
| Teh2-PB | 313 | CG15004-PB | 82..277 | 41..237 | 321 | 37 | Plus |
| tipE-PB | 452 | CG1232-PB | 8..110 | 37..143 | 206 | 42.1 | Plus |
