Clone Sequence Records
BS07935.3prime Sequence
855 bp (818 high quality bases) assembled on 2006-01-06
> BS07935.3prime
ATGGTCTAGAAAGCTTCTAGCGCCAGCGCTCGTGCACTGCCGACTCGCGC
ATGATAATCTTCTGAAGTTTTTCCTGCTGGGTCATCTGATCCTGCTGGTT
GGTGGCACTGTTTCCCTGGTGGTGAACCGGCTGCTGCGCCCGCTGAAAGT
TGGGCAACGGCGCCTTCTTCTCGTGCGCCAGTTCCGTGAAGGCCAGCTTG
CGGCGCTGCTGCGGCGGTATCTTCTTGCAGTAGCTCAGCAGATGGATGTG
CAGCGTGCGTTCCAGGTCGAAGGAGCGATCGCAGTACTTGCACAAATGGA
CGGTGGTCAGGGTGGTTCTGCTCTCCCGCGGTCGCCGTGCACGGAAGCGC
ACCTTGAAGTCATCGTCGTGGGTGTGCCGGTGGGCGCCCAGCAGCGATCG
GATGTGAAACTTGGCACCGCACACGCCGCACGAGTAGCTGGGCAGCTGCT
GGTCCGTGGCATAGCTGCCCAGCGGCTTCAGCTGCAGTCGGCCAAACGGT
CCGCCCTGATACTCCCCGCCATCTCCTTCATCATGATCGGGCTTCGTCGT
TCCGTTGGAGGCTTGCTGTGCGGCCATAATGGCTTCCATTTCCGCTGCCT
CGGCCTCGGCCTCGTAGTTCCGGGGCGTGAGGCCATTGCGACGAGGAGAT
AGCAATAGATTGCAACTGCTGCGTCTTCTGTTATCGTAGTTGTTCGTCTT
CTCCAGCGGCGAACTCTCCTCCTCGTCGGTCTCTTCCTGAGCTGGAGCGT
GTAGCAGACTCCTCTTGCTGCGCCTGCGACGCTCACCATGGGCATGGCCA
GCCATGCTCGATCCTTCCCGCCCTGCTCCTCCGCCTGCGCCAGCCGTGCT
TCGCT
BS07935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-PA | 1014 | CG6470-RA | 176..1014 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1532 | CG6470-RB | 334..1172 | 855..17 | 4195 | 100 | Minus |
CG6470-RA | 1475 | CG6470-RA | 277..1115 | 855..17 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18513189..18513829 | 17..657 | 3205 | 100 | Plus |
X | 23542271 | X | 18514337..18514534 | 658..855 | 990 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4863..4916 | 370..316 | 109 | 73.2 | Minus |
BS07935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:22 Download gff for
BS07935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 176..1014 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:53 Download gff for
BS07935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 176..1014 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:56 Download gff for
BS07935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 277..1115 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:48 Download gff for
BS07935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 277..1115 | 17..855 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:48 Download gff for
BS07935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18513189..18513829 | 17..657 | 100 | <- | Plus |
X | 18514337..18514534 | 658..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:56 Download gff for
BS07935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18407222..18407862 | 17..657 | 100 | <- | Plus |
arm_X | 18408370..18408567 | 658..855 | 100 | | Plus |
BS07935.5prime Sequence
821 bp (820 high quality bases) assembled on 2006-01-06
> BS07935.5prime
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGGAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCA
BS07935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-PA | 1014 | CG6470-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1532 | CG6470-RB | 155..963 | 13..821 | 4030 | 99.9 | Plus |
CG6470-RA | 1475 | CG6470-RA | 98..906 | 13..821 | 4030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18513398..18513829 | 821..390 | 2160 | 100 | Minus |
X | 23542271 | X | 18514337..18514713 | 389..13 | 1870 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-04 02:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4863..4916 | 677..731 | 109 | 73.2 | Plus |
BS07935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:23 Download gff for
BS07935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:55 Download gff for
BS07935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:48:03 Download gff for
BS07935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..905 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:42 Download gff for
BS07935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..905 | 9..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:42 Download gff for
BS07935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18513399..18513829 | 390..820 | 100 | <- | Minus |
X | 18514337..18514715 | 9..389 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:48:03 Download gff for
BS07935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18407432..18407862 | 390..820 | 100 | <- | Minus |
arm_X | 18408370..18408748 | 9..389 | 99 | | Minus |
BS07935.complete Sequence
1046 bp (1046 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636035
> BS07935.complete
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGGAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCAAGAAGATACCGCCGCAGCAGCGCCGCAAG
CTGGCCTTCACGGAACTGGCGCACGAGAAGAAGGCGCCGTTGCCCAACTT
TCAGCGGGCGCAGCAGCCGGTTCACCACCAGGGAAACAGTGCCACCAACC
AGCAGGATCAGATGACCCAGCAGGAAAAACTTCAGAAGATTATCATGCGC
GAGTCGGCAGTGCACGAGCGCTGGCGCTAGAAGCTTTCTAGACCAT
BS07935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1014 | CG6470-PB | 1..1014 | 17..1030 | 5070 | 100 | Plus |
CG6470-RA | 1014 | CG6470-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1532 | CG6470-RB | 155..1172 | 13..1030 | 5075 | 99.9 | Plus |
CG6470-RA | 1475 | CG6470-RA | 98..1115 | 13..1030 | 5075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18513189..18513829 | 1030..390 | 3205 | 100 | Minus |
X | 23542271 | X | 18514337..18514713 | 389..13 | 1870 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-27 20:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4863..4916 | 677..731 | 109 | 73.2 | Plus |
BS07935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:10 Download gff for
BS07935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:31 Download gff for
BS07935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..1115 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:49 Download gff for
BS07935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 102..1115 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:10 Download gff for
BS07935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..1115 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:47 Download gff for
BS07935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 102..1115 | 17..1030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:47 Download gff for
BS07935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18514337..18514709 | 17..389 | 100 | | Minus |
X | 18513189..18513829 | 390..1030 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:49 Download gff for
BS07935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18407222..18407862 | 390..1030 | 100 | <- | Minus |
arm_X | 18408370..18408742 | 17..389 | 100 | | Minus |
BS07935.pep Sequence
Translation from 16 to 1029
> BS07935.pep
MNKPQKPIKVKRAKRTGCSRIQPQEFVEAQVENARRAVERKLIYLSESNR
ASASTRAAKRSTAGAGGGAGREGSSMAGHAHGERRRRSKRSLLHAPAQEE
TDEEESSPLEKTNNYDNRRRSSCNLLLSPRRNGLTPRNYEAEAEAAEMEA
IMAAQQASNGTTKPDHDEGDGGEYQGGPFGRLQLKPLGSYATDQQLPSYS
CGVCGAKFHIRSLLGAHRHTHDDDFKVRFRARRPRESRTTLTTVHLCKYC
DRSFDLERTLHIHLLSYCKKIPPQQRRKLAFTELAHEKKAPLPNFQRAQQ
PVHHQGNSATNQQDQMTQQEKLQKIIMRESAVHERWR*
BS07935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-PB | 337 | CG6470-PB | 1..337 | 1..337 | 1768 | 100 | Plus |
CG6470-PA | 337 | CG6470-PA | 1..337 | 1..337 | 1768 | 100 | Plus |
CG8478-PE | 571 | CG8478-PE | 204..467 | 10..293 | 228 | 25.9 | Plus |
CG8478-PB | 571 | CG8478-PB | 204..467 | 10..293 | 228 | 25.9 | Plus |
CG8478-PC | 572 | CG8478-PC | 205..468 | 10..293 | 228 | 25.9 | Plus |