Clone BS07935 Report

Search the DGRC for BS07935

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG6470-RA
Protein status:BS07935.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07935.3prime Sequence

855 bp (818 high quality bases) assembled on 2006-01-06

> BS07935.3prime
ATGGTCTAGAAAGCTTCTAGCGCCAGCGCTCGTGCACTGCCGACTCGCGC
ATGATAATCTTCTGAAGTTTTTCCTGCTGGGTCATCTGATCCTGCTGGTT
GGTGGCACTGTTTCCCTGGTGGTGAACCGGCTGCTGCGCCCGCTGAAAGT
TGGGCAACGGCGCCTTCTTCTCGTGCGCCAGTTCCGTGAAGGCCAGCTTG
CGGCGCTGCTGCGGCGGTATCTTCTTGCAGTAGCTCAGCAGATGGATGTG
CAGCGTGCGTTCCAGGTCGAAGGAGCGATCGCAGTACTTGCACAAATGGA
CGGTGGTCAGGGTGGTTCTGCTCTCCCGCGGTCGCCGTGCACGGAAGCGC
ACCTTGAAGTCATCGTCGTGGGTGTGCCGGTGGGCGCCCAGCAGCGATCG
GATGTGAAACTTGGCACCGCACACGCCGCACGAGTAGCTGGGCAGCTGCT
GGTCCGTGGCATAGCTGCCCAGCGGCTTCAGCTGCAGTCGGCCAAACGGT
CCGCCCTGATACTCCCCGCCATCTCCTTCATCATGATCGGGCTTCGTCGT
TCCGTTGGAGGCTTGCTGTGCGGCCATAATGGCTTCCATTTCCGCTGCCT
CGGCCTCGGCCTCGTAGTTCCGGGGCGTGAGGCCATTGCGACGAGGAGAT
AGCAATAGATTGCAACTGCTGCGTCTTCTGTTATCGTAGTTGTTCGTCTT
CTCCAGCGGCGAACTCTCCTCCTCGTCGGTCTCTTCCTGAGCTGGAGCGT
GTAGCAGACTCCTCTTGCTGCGCCTGCGACGCTCACCATGGGCATGGCCA
GCCATGCTCGATCCTTCCCGCCCTGCTCCTCCGCCTGCGCCAGCCGTGCT
TCGCT

BS07935.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PA 1014 CG6470-RA 176..1014 855..17 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1532 CG6470-RB 334..1172 855..17 4195 100 Minus
CG6470-RA 1475 CG6470-RA 277..1115 855..17 4195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18513189..18513829 17..657 3205 100 Plus
X 23542271 X 18514337..18514534 658..855 990 100 Plus
Blast to na_te.dros performed 2015-02-12 00:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 4863..4916 370..316 109 73.2 Minus

BS07935.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:22 Download gff for BS07935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 176..1014 17..855 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:53 Download gff for BS07935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 176..1014 17..855 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:56 Download gff for BS07935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 277..1115 17..855 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:48 Download gff for BS07935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 277..1115 17..855 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:48 Download gff for BS07935.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18513189..18513829 17..657 100 <- Plus
X 18514337..18514534 658..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:56 Download gff for BS07935.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18407222..18407862 17..657 100 <- Plus
arm_X 18408370..18408567 658..855 100   Plus

BS07935.5prime Sequence

821 bp (820 high quality bases) assembled on 2006-01-06

> BS07935.5prime
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGGAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCA

BS07935.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PA 1014 CG6470-RA 1..805 17..821 4025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1532 CG6470-RB 155..963 13..821 4030 99.9 Plus
CG6470-RA 1475 CG6470-RA 98..906 13..821 4030 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18513398..18513829 821..390 2160 100 Minus
X 23542271 X 18514337..18514713 389..13 1870 99.7 Minus
Blast to na_te.dros performed 2015-02-04 02:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 4863..4916 677..731 109 73.2 Plus

BS07935.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:23 Download gff for BS07935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:55 Download gff for BS07935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:48:03 Download gff for BS07935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..905 9..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:42 Download gff for BS07935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..905 9..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:42 Download gff for BS07935.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18513399..18513829 390..820 100 <- Minus
X 18514337..18514715 9..389 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:48:03 Download gff for BS07935.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18407432..18407862 390..820 100 <- Minus
arm_X 18408370..18408748 9..389 99   Minus

BS07935.complete Sequence

1046 bp (1046 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636035

> BS07935.complete
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGGAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCAAGAAGATACCGCCGCAGCAGCGCCGCAAG
CTGGCCTTCACGGAACTGGCGCACGAGAAGAAGGCGCCGTTGCCCAACTT
TCAGCGGGCGCAGCAGCCGGTTCACCACCAGGGAAACAGTGCCACCAACC
AGCAGGATCAGATGACCCAGCAGGAAAAACTTCAGAAGATTATCATGCGC
GAGTCGGCAGTGCACGAGCGCTGGCGCTAGAAGCTTTCTAGACCAT

BS07935.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1014 CG6470-PB 1..1014 17..1030 5070 100 Plus
CG6470-RA 1014 CG6470-PA 1..1014 17..1030 5070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1532 CG6470-RB 155..1172 13..1030 5075 99.9 Plus
CG6470-RA 1475 CG6470-RA 98..1115 13..1030 5075 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18513189..18513829 1030..390 3205 100 Minus
X 23542271 X 18514337..18514713 389..13 1870 99.7 Minus
Blast to na_te.dros performed 2014-11-27 20:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 4863..4916 677..731 109 73.2 Plus

BS07935.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:10 Download gff for BS07935.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 1..1014 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:31 Download gff for BS07935.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..1115 9..1030 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:49 Download gff for BS07935.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 102..1115 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:10 Download gff for BS07935.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..1115 9..1030 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:47 Download gff for BS07935.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 102..1115 17..1030 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:47 Download gff for BS07935.complete
Subject Subject Range Query Range Percent Splice Strand
X 18514337..18514709 17..389 100   Minus
X 18513189..18513829 390..1030 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:49 Download gff for BS07935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18407222..18407862 390..1030 100 <- Minus
arm_X 18408370..18408742 17..389 100   Minus

BS07935.pep Sequence

Translation from 16 to 1029

> BS07935.pep
MNKPQKPIKVKRAKRTGCSRIQPQEFVEAQVENARRAVERKLIYLSESNR
ASASTRAAKRSTAGAGGGAGREGSSMAGHAHGERRRRSKRSLLHAPAQEE
TDEEESSPLEKTNNYDNRRRSSCNLLLSPRRNGLTPRNYEAEAEAAEMEA
IMAAQQASNGTTKPDHDEGDGGEYQGGPFGRLQLKPLGSYATDQQLPSYS
CGVCGAKFHIRSLLGAHRHTHDDDFKVRFRARRPRESRTTLTTVHLCKYC
DRSFDLERTLHIHLLSYCKKIPPQQRRKLAFTELAHEKKAPLPNFQRAQQ
PVHHQGNSATNQQDQMTQQEKLQKIIMRESAVHERWR*

BS07935.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PB 337 CG6470-PB 1..337 1..337 1768 100 Plus
CG6470-PA 337 CG6470-PA 1..337 1..337 1768 100 Plus
CG8478-PE 571 CG8478-PE 204..467 10..293 228 25.9 Plus
CG8478-PB 571 CG8478-PB 204..467 10..293 228 25.9 Plus
CG8478-PC 572 CG8478-PC 205..468 10..293 228 25.9 Plus