Clone Sequence Records
BS07938.3prime Sequence
965 bp (828 high quality bases) assembled on 2006-01-06
> BS07938.3prime
ATGGTCTAGAAAGCTTCTAGAAAGTACGTGGCTGGGAGCCGAAACCAAGC
CCCACGCCACGCATCGTGTGTGTGGCGGCTCGCGCCATCTCGTACTGCTG
CTCCATGTTGGAGAACATGCGCTGGCGCTGCTGCACGTCCGTGGGCACTT
TCGTTCCGCCAGCGGCTCCCGATGGCGCAGCACCTCTTACTGCGCGGTTT
CCCTCGCCTGCTGCACTTCCATTGGTGGACTCCGCCTGGCCGCCCTTGCC
ATCGTCATTGCCGGACGTACCAGCGTTCTTGATACCCATGAGCCGCATAA
ACTTGGAGGCCACCTTGCCGTCGGAGTCCTGGGAGAAGTGCGCGTTGCCC
CACTTGTTCGCCGAGTTCTCGCTCTTCTTGGAGCCCCACAGTAGCTTGCG
CTTCTGCTGCTGCTCCGCATAGCGATTGGCATTGATGATGCTCGGATTGT
AGTAACTGGGCAGCTGGATGGGTTCTGCGACTGGTGCTGCTGCCGCTGGT
GTGCTCAGCTCCAAGGACATCAGCGAGGGTATCTTGGGCGCATAGTTGGG
CGTGGGCAGGAGACCGCCGCCACCGCCGCCGGATGAACCGGCTGCCATGG
CTGCGGCTGTTGCATTGGCAGCTACCAGAGCGGCCGCTGCAACCCTCGCC
GCTGCTGTTGCATTAGTTGCCGTTGATCCTGCTCCGCCGCCTGATTTAGC
GAGCAGCATATGAGATCCGGCCACAGCTCCACCGCGAAGTGTTGTGGCTT
GTTCTTCCTTCGGAGATCTGGAGCGGCTGCTGGAGTCGCGTTCGCGATAT
TTGCGTGACTGTTGCGACTGATGGCGGCGACGAGAGGGCGGCGTGCCCGT
TGGTGTGCGGGAACCGGATCGAGAGTCCCGGCGACGACGACTGCGTTCAT
CATGGGATCGACGGACTGATGCTGCACTGACCGCTGCAGCGGCGGCTGAC
GATGAGTTGTTGTGA
BS07938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PB | 1542 | CG6340-RB | 594..1542 | 965..17 | 4745 | 100 | Minus |
CG6340-PD | 1281 | CG6340-RD | 333..1281 | 965..17 | 4745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RF | 2177 | CG6340-RF | 1058..2009 | 965..14 | 4760 | 100 | Minus |
CG6340-RE | 1831 | CG6340-RE | 712..1663 | 965..14 | 4760 | 100 | Minus |
CG6340-RB | 1814 | CG6340-RB | 695..1646 | 965..14 | 4760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15485493..15486444 | 965..14 | 4760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:19:25 has no hits.
BS07938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:27 Download gff for
BS07938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PB | 595..1542 | 17..964 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:59 Download gff for
BS07938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PD | 334..1281 | 17..964 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:38 Download gff for
BS07938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 696..1651 | 9..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:52 Download gff for
BS07938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 696..1651 | 9..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:52 Download gff for
BS07938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15485494..15486449 | 9..964 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:38 Download gff for
BS07938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15379527..15380482 | 9..964 | 99 | | Minus |
BS07938.5prime Sequence
874 bp (770 high quality bases) assembled on 2006-01-06
> BS07938.5prime
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCT
GTGGCCGGATCTCATATGCTGCTC
BS07938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PB | 1542 | CG6340-RB | 1..858 | 17..874 | 4290 | 100 | Plus |
CG6340-PD | 1281 | CG6340-RD | 23..597 | 300..874 | 2875 | 100 | Plus |
CG6340-PA | 540 | CG6340-RA | 1..286 | 17..302 | 1430 | 100 | Plus |
CG6340-PC | 324 | CG6340-RC | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RB | 1814 | CG6340-RB | 102..959 | 17..874 | 4290 | 100 | Plus |
CG6340-RE | 1831 | CG6340-RE | 102..976 | 17..874 | 4110 | 98.1 | Plus |
CG6340-RF | 2177 | CG6340-RF | 750..1322 | 302..874 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15485330..15485757 | 447..874 | 2140 | 100 | Plus |
X | 23542271 | X | 15483198..15483421 | 79..302 | 1120 | 100 | Plus |
X | 23542271 | X | 15485120..15485269 | 300..449 | 750 | 100 | Plus |
X | 23542271 | X | 15482475..15482538 | 17..80 | 320 | 100 | Plus |
X | 23542271 | X | 15482855..15482974 | 94..213 | 305 | 87 | Plus |
Blast to na_te.dros performed 2015-02-10 21:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 131..285 | 124 | 58.6 | Plus |
BS07938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:28 Download gff for
BS07938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PB | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:00 Download gff for
BS07938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PB | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:26 Download gff for
BS07938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 96..959 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:44 Download gff for
BS07938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 96..959 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:44 Download gff for
BS07938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15482469..15482537 | 9..79 | 94 | -> | Plus |
X | 15483199..15483420 | 80..301 | 100 | -> | Plus |
X | 15485122..15485268 | 302..448 | 100 | -> | Plus |
X | 15485332..15485757 | 449..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:26 Download gff for
BS07938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15377232..15377453 | 80..301 | 100 | -> | Plus |
arm_X | 15376502..15376570 | 9..79 | 94 | -> | Plus |
arm_X | 15379155..15379301 | 302..448 | 100 | -> | Plus |
arm_X | 15379365..15379790 | 449..874 | 100 | | Plus |
BS07938.complete Sequence
1574 bp (1574 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636036
> BS07938.complete
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCT
GTGGCCGGATCTCATATGCTGCTCGCTAAATCAGGCGGCGGAGCAGGATC
AACGGCAACTAATGCAACAGCAGCGGCGAGGGTTGCAGCGGCCGCTCTGG
TAGCTGCCAATGCAACAGCCGCAGCCATGGCAGCCGGTTCATCCGGCGGC
GGTGGCGGCGGTCTCCTGCCCACGCCCAACTATGCGCCCAAGATACCCTC
GCTGATGTCCTTGGAGCTGAGCACACCAGCGGCAGCAGCACCAGTCGCAG
AACCCATCCAGCTGCCCAGTTACTACAATCCGAGCATCATCAATGCCAAT
CGCTATGCGGAGCAGCAGCAGAAGCGCAAGCTACTGTGGGGCTCCAAGAA
GAGCGAGAACTCGGCGAACAAGTGGGGCAACGCGCACTTCTCCCAGGACT
CCGACGGCAAGGTGGCCTCCAAGTTTATGCGGCTCATGGGTATCAAGAAC
GCTGGTACGTCCGGCAATGACGATGGCAAGGGCGGCCAGGCGGAGTCCAC
CAATGGAAGTGCAGCAGGCGAGGGAAACCGCGCAGTAAGAGGTGCTGCGC
CATCGGGAGCCGCTGGCGGAACGAAAGTGCCCACGGACGTGCAGCAGCGC
CAGCGCATGTTCTCCAACATGGAGCAGCAGTACGAGATGGCGCGAGCCGC
CACACACACGATGCGTGGCGTGGGGCTTGGTTTCGGCTCCCAGCCACGTA
CTTTCTAGAAGCTTTCTAGACCAT
BS07938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RB | 1542 | CG6340-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
CG6340-RA | 540 | CG6340-PA | 1..286 | 17..302 | 1430 | 100 | Plus |
CG6340-RF | 324 | CG6340-PF | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RB | 1814 | CG6340-RB | 102..1646 | 17..1561 | 7725 | 100 | Plus |
CG6340-RE | 1831 | CG6340-RE | 102..1663 | 17..1561 | 7520 | 98.9 | Plus |
CG6340-RF | 2177 | CG6340-RF | 750..2009 | 302..1561 | 6300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15485330..15486444 | 447..1561 | 5575 | 100 | Plus |
X | 23542271 | X | 15483198..15483421 | 79..302 | 1120 | 100 | Plus |
X | 23542271 | X | 15485120..15485269 | 300..449 | 750 | 100 | Plus |
X | 23542271 | X | 15482475..15482538 | 17..80 | 320 | 100 | Plus |
X | 23542271 | X | 15482855..15482974 | 94..213 | 305 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:21:06 has no hits.
BS07938.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:12 Download gff for
BS07938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 1..1542 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:33 Download gff for
BS07938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 93..1648 | 9..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:39 Download gff for
BS07938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 102..1643 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:12 Download gff for
BS07938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 93..1648 | 9..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:30 Download gff for
BS07938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 102..1643 | 17..1558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:30 Download gff for
BS07938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15482475..15482537 | 17..79 | 100 | -> | Plus |
X | 15483199..15483420 | 80..301 | 100 | -> | Plus |
X | 15485122..15485268 | 302..448 | 100 | -> | Plus |
X | 15485332..15486441 | 449..1558 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:39 Download gff for
BS07938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15376508..15376570 | 17..79 | 100 | -> | Plus |
arm_X | 15377232..15377453 | 80..301 | 100 | -> | Plus |
arm_X | 15379155..15379301 | 302..448 | 100 | -> | Plus |
arm_X | 15379365..15380474 | 449..1558 | 100 | | Plus |
BS07938.pep Sequence
Translation from 16 to 1557
> BS07938.pep
MEALVNYSSEDDQEDAGFQIRAPQQQQQLRHLPHAKSPKTTTDSLLKQKN
NNNYGSGNSPRGKEREREREREREKTKPMSQQQSHRSSSRGRIDEEPKPS
SRHRQERDKDRERDRDRERDRDKDKKRSDSERSRDKGRDKNHSKGDHRHH
RTKDGDSHRERERDRDRERERDRDKDRDRRRSEKSSRHHSGKERHHHHHN
NSSSAAAAAVSAASVRRSHDERSRRRRDSRSGSRTPTGTPPSRRRHQSQQ
SRKYRERDSSSRSRSPKEEQATTLRGGAVAGSHMLLAKSGGGAGSTATNA
TAAARVAAAALVAANATAAAMAAGSSGGGGGGLLPTPNYAPKIPSLMSLE
LSTPAAAAPVAEPIQLPSYYNPSIINANRYAEQQQKRKLLWGSKKSENSA
NKWGNAHFSQDSDGKVASKFMRLMGIKNAGTSGNDDGKGGQAESTNGSAA
GEGNRAVRGAAPSGAAGGTKVPTDVQQRQRMFSNMEQQYEMARAATHTMR
GVGLGFGSQPRTF*
BS07938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PB | 513 | CG6340-PB | 1..513 | 1..513 | 2652 | 100 | Plus |
CG6340-PF | 107 | CG6340-PF | 1..106 | 1..111 | 496 | 89.2 | Plus |
CG6340-PA | 179 | CG6340-PA | 1..95 | 1..95 | 492 | 100 | Plus |
CG7971-PG | 1062 | CG7971-PG | 393..656 | 23..273 | 246 | 25.7 | Plus |
CG7971-PA | 1062 | CG7971-PA | 393..656 | 23..273 | 246 | 25.7 | Plus |
CG7971-PG | 1062 | CG7971-PG | 432..673 | 47..267 | 224 | 25.6 | Plus |
CG7971-PG | 1062 | CG7971-PG | 441..691 | 9..273 | 218 | 25.9 | Plus |
CG7971-PG | 1062 | CG7971-PG | 279..544 | 11..275 | 207 | 26.7 | Plus |
CG7971-PG | 1062 | CG7971-PG | 350..575 | 21..270 | 192 | 24 | Plus |
CG7971-PG | 1062 | CG7971-PG | 195..456 | 3..275 | 176 | 24.8 | Plus |
CG7971-PG | 1062 | CG7971-PG | 239..515 | 22..270 | 174 | 24.8 | Plus |
CG7971-PG | 1062 | CG7971-PG | 497..782 | 8..275 | 157 | 25.4 | Plus |