Clone BS07938 Report

Search the DGRC for BS07938

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG6340-RB
Protein status:BS07938.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07938.3prime Sequence

965 bp (828 high quality bases) assembled on 2006-01-06

> BS07938.3prime
ATGGTCTAGAAAGCTTCTAGAAAGTACGTGGCTGGGAGCCGAAACCAAGC
CCCACGCCACGCATCGTGTGTGTGGCGGCTCGCGCCATCTCGTACTGCTG
CTCCATGTTGGAGAACATGCGCTGGCGCTGCTGCACGTCCGTGGGCACTT
TCGTTCCGCCAGCGGCTCCCGATGGCGCAGCACCTCTTACTGCGCGGTTT
CCCTCGCCTGCTGCACTTCCATTGGTGGACTCCGCCTGGCCGCCCTTGCC
ATCGTCATTGCCGGACGTACCAGCGTTCTTGATACCCATGAGCCGCATAA
ACTTGGAGGCCACCTTGCCGTCGGAGTCCTGGGAGAAGTGCGCGTTGCCC
CACTTGTTCGCCGAGTTCTCGCTCTTCTTGGAGCCCCACAGTAGCTTGCG
CTTCTGCTGCTGCTCCGCATAGCGATTGGCATTGATGATGCTCGGATTGT
AGTAACTGGGCAGCTGGATGGGTTCTGCGACTGGTGCTGCTGCCGCTGGT
GTGCTCAGCTCCAAGGACATCAGCGAGGGTATCTTGGGCGCATAGTTGGG
CGTGGGCAGGAGACCGCCGCCACCGCCGCCGGATGAACCGGCTGCCATGG
CTGCGGCTGTTGCATTGGCAGCTACCAGAGCGGCCGCTGCAACCCTCGCC
GCTGCTGTTGCATTAGTTGCCGTTGATCCTGCTCCGCCGCCTGATTTAGC
GAGCAGCATATGAGATCCGGCCACAGCTCCACCGCGAAGTGTTGTGGCTT
GTTCTTCCTTCGGAGATCTGGAGCGGCTGCTGGAGTCGCGTTCGCGATAT
TTGCGTGACTGTTGCGACTGATGGCGGCGACGAGAGGGCGGCGTGCCCGT
TGGTGTGCGGGAACCGGATCGAGAGTCCCGGCGACGACGACTGCGTTCAT
CATGGGATCGACGGACTGATGCTGCACTGACCGCTGCAGCGGCGGCTGAC
GATGAGTTGTTGTGA

BS07938.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PB 1542 CG6340-RB 594..1542 965..17 4745 100 Minus
CG6340-PD 1281 CG6340-RD 333..1281 965..17 4745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RF 2177 CG6340-RF 1058..2009 965..14 4760 100 Minus
CG6340-RE 1831 CG6340-RE 712..1663 965..14 4760 100 Minus
CG6340-RB 1814 CG6340-RB 695..1646 965..14 4760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15485493..15486444 965..14 4760 100 Minus
Blast to na_te.dros performed on 2015-02-02 20:19:25 has no hits.

BS07938.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:27 Download gff for BS07938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PB 595..1542 17..964 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:23:59 Download gff for BS07938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PD 334..1281 17..964 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:38 Download gff for BS07938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 696..1651 9..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:52 Download gff for BS07938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 696..1651 9..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:52 Download gff for BS07938.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15485494..15486449 9..964 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:38 Download gff for BS07938.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15379527..15380482 9..964 99   Minus

BS07938.5prime Sequence

874 bp (770 high quality bases) assembled on 2006-01-06

> BS07938.5prime
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCT
GTGGCCGGATCTCATATGCTGCTC

BS07938.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PB 1542 CG6340-RB 1..858 17..874 4290 100 Plus
CG6340-PD 1281 CG6340-RD 23..597 300..874 2875 100 Plus
CG6340-PA 540 CG6340-RA 1..286 17..302 1430 100 Plus
CG6340-PC 324 CG6340-RC 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RB 1814 CG6340-RB 102..959 17..874 4290 100 Plus
CG6340-RE 1831 CG6340-RE 102..976 17..874 4110 98.1 Plus
CG6340-RF 2177 CG6340-RF 750..1322 302..874 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15485330..15485757 447..874 2140 100 Plus
X 23542271 X 15483198..15483421 79..302 1120 100 Plus
X 23542271 X 15485120..15485269 300..449 750 100 Plus
X 23542271 X 15482475..15482538 17..80 320 100 Plus
X 23542271 X 15482855..15482974 94..213 305 87 Plus
Blast to na_te.dros performed 2015-02-10 21:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 715..865 131..285 124 58.6 Plus

BS07938.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:28 Download gff for BS07938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PB 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:00 Download gff for BS07938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PB 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:26 Download gff for BS07938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 96..959 9..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:44 Download gff for BS07938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 96..959 9..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:44 Download gff for BS07938.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15482469..15482537 9..79 94 -> Plus
X 15483199..15483420 80..301 100 -> Plus
X 15485122..15485268 302..448 100 -> Plus
X 15485332..15485757 449..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:26 Download gff for BS07938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15377232..15377453 80..301 100 -> Plus
arm_X 15376502..15376570 9..79 94 -> Plus
arm_X 15379155..15379301 302..448 100 -> Plus
arm_X 15379365..15379790 449..874 100   Plus

BS07938.complete Sequence

1574 bp (1574 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636036

> BS07938.complete
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCT
GTGGCCGGATCTCATATGCTGCTCGCTAAATCAGGCGGCGGAGCAGGATC
AACGGCAACTAATGCAACAGCAGCGGCGAGGGTTGCAGCGGCCGCTCTGG
TAGCTGCCAATGCAACAGCCGCAGCCATGGCAGCCGGTTCATCCGGCGGC
GGTGGCGGCGGTCTCCTGCCCACGCCCAACTATGCGCCCAAGATACCCTC
GCTGATGTCCTTGGAGCTGAGCACACCAGCGGCAGCAGCACCAGTCGCAG
AACCCATCCAGCTGCCCAGTTACTACAATCCGAGCATCATCAATGCCAAT
CGCTATGCGGAGCAGCAGCAGAAGCGCAAGCTACTGTGGGGCTCCAAGAA
GAGCGAGAACTCGGCGAACAAGTGGGGCAACGCGCACTTCTCCCAGGACT
CCGACGGCAAGGTGGCCTCCAAGTTTATGCGGCTCATGGGTATCAAGAAC
GCTGGTACGTCCGGCAATGACGATGGCAAGGGCGGCCAGGCGGAGTCCAC
CAATGGAAGTGCAGCAGGCGAGGGAAACCGCGCAGTAAGAGGTGCTGCGC
CATCGGGAGCCGCTGGCGGAACGAAAGTGCCCACGGACGTGCAGCAGCGC
CAGCGCATGTTCTCCAACATGGAGCAGCAGTACGAGATGGCGCGAGCCGC
CACACACACGATGCGTGGCGTGGGGCTTGGTTTCGGCTCCCAGCCACGTA
CTTTCTAGAAGCTTTCTAGACCAT

BS07938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RB 1542 CG6340-PB 1..1542 17..1558 7710 100 Plus
CG6340-RA 540 CG6340-PA 1..286 17..302 1430 100 Plus
CG6340-RF 324 CG6340-PF 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RB 1814 CG6340-RB 102..1646 17..1561 7725 100 Plus
CG6340-RE 1831 CG6340-RE 102..1663 17..1561 7520 98.9 Plus
CG6340-RF 2177 CG6340-RF 750..2009 302..1561 6300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15485330..15486444 447..1561 5575 100 Plus
X 23542271 X 15483198..15483421 79..302 1120 100 Plus
X 23542271 X 15485120..15485269 300..449 750 100 Plus
X 23542271 X 15482475..15482538 17..80 320 100 Plus
X 23542271 X 15482855..15482974 94..213 305 87 Plus
Blast to na_te.dros performed on 2014-11-27 10:21:06 has no hits.

BS07938.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:12 Download gff for BS07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 1..1542 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:33 Download gff for BS07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 93..1648 9..1566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:39 Download gff for BS07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 102..1643 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:12 Download gff for BS07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 93..1648 9..1566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:30 Download gff for BS07938.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 102..1643 17..1558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:30 Download gff for BS07938.complete
Subject Subject Range Query Range Percent Splice Strand
X 15482475..15482537 17..79 100 -> Plus
X 15483199..15483420 80..301 100 -> Plus
X 15485122..15485268 302..448 100 -> Plus
X 15485332..15486441 449..1558 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:39 Download gff for BS07938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15376508..15376570 17..79 100 -> Plus
arm_X 15377232..15377453 80..301 100 -> Plus
arm_X 15379155..15379301 302..448 100 -> Plus
arm_X 15379365..15380474 449..1558 100   Plus

BS07938.pep Sequence

Translation from 16 to 1557

> BS07938.pep
MEALVNYSSEDDQEDAGFQIRAPQQQQQLRHLPHAKSPKTTTDSLLKQKN
NNNYGSGNSPRGKEREREREREREKTKPMSQQQSHRSSSRGRIDEEPKPS
SRHRQERDKDRERDRDRERDRDKDKKRSDSERSRDKGRDKNHSKGDHRHH
RTKDGDSHRERERDRDRERERDRDKDRDRRRSEKSSRHHSGKERHHHHHN
NSSSAAAAAVSAASVRRSHDERSRRRRDSRSGSRTPTGTPPSRRRHQSQQ
SRKYRERDSSSRSRSPKEEQATTLRGGAVAGSHMLLAKSGGGAGSTATNA
TAAARVAAAALVAANATAAAMAAGSSGGGGGGLLPTPNYAPKIPSLMSLE
LSTPAAAAPVAEPIQLPSYYNPSIINANRYAEQQQKRKLLWGSKKSENSA
NKWGNAHFSQDSDGKVASKFMRLMGIKNAGTSGNDDGKGGQAESTNGSAA
GEGNRAVRGAAPSGAAGGTKVPTDVQQRQRMFSNMEQQYEMARAATHTMR
GVGLGFGSQPRTF*

BS07938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PB 513 CG6340-PB 1..513 1..513 2652 100 Plus
CG6340-PF 107 CG6340-PF 1..106 1..111 496 89.2 Plus
CG6340-PA 179 CG6340-PA 1..95 1..95 492 100 Plus
CG7971-PG 1062 CG7971-PG 393..656 23..273 246 25.7 Plus
CG7971-PA 1062 CG7971-PA 393..656 23..273 246 25.7 Plus
CG7971-PG 1062 CG7971-PG 432..673 47..267 224 25.6 Plus
CG7971-PG 1062 CG7971-PG 441..691 9..273 218 25.9 Plus
CG7971-PG 1062 CG7971-PG 279..544 11..275 207 26.7 Plus
CG7971-PG 1062 CG7971-PG 350..575 21..270 192 24 Plus
CG7971-PG 1062 CG7971-PG 195..456 3..275 176 24.8 Plus
CG7971-PG 1062 CG7971-PG 239..515 22..270 174 24.8 Plus
CG7971-PG 1062 CG7971-PG 497..782 8..275 157 25.4 Plus