Clone Sequence Records
BS07939.3prime Sequence
897 bp (831 high quality bases) assembled on 2006-01-06
> BS07939.3prime
ATGGTCTAGAAAGCTTCTAGTAGAACTTATTGCGGACAAATGCGTTAATC
AAACGCGGTGTGTGCTTATCCAGGCTGCACAACTCTAACAAGTTCTCGTT
TCGTCCGCTGGAATATATCATGGAGCGTTGACGCTGCCGCAGGCTCACCA
TTATGAATTTAGCATTAGAGTTTCGCTTTTCGCGATACTTATCCATTAGA
GCAGCCAAGCACTTTGAATTATTTTCCGGATTTCCTCGCGCGGCACCCGG
CACTAGTACCAAAAACACGTCGAACGTATTCTGCATATCCAATAGCGCTC
TGAACAGAATTTCATTTAGCGATTGCCTCACTTTGCCCACCTTCTGATTC
TCGCAACAGGTCTTGGCCTCTGAAACAGACATCTCATTTGTCCACGGCAA
CGCCTTCAATTTGCCACTGCGGTCGTGCCAAAACTCCACCGTCACCTTTC
GGTCGCTGCGGAAATAGCCAAAACCCAATGCCACCAGGGCGTCTAAGTAC
TTCAGCGAACGACATGGACCAGAAAGGTATTTGCCCAGATAGGCCTGCTC
CAGATTGAGGGTAATGTGCAGTCGCCTACCGAGTGCCTTGTTCAGGCCAA
AGGATATTTCGTAGACGCTATGCAGGAAACTCGCCTTTTGGAACGAAGTA
GTTGCACACTGGAATTTAAATGTATTCTTGTTTTTGAGTGACGAAGGTAG
TACCAACTGATTAACCACCTTTTTGGGCTTCCTCAAACGCATATCCTCCA
ACAGCAGACGTACGGGCGGAACATTGCTCGCCTTAAGCTTCTTCTTATCC
AGCAATTGCTCAGCAAAGGGGCGCACTCGGGAGTTAAGTCGCGAGAGGCG
TGCCCATTTCTGAAGAAAGTGCTCATAGCTCATGTGTGGAATAAGAA
BS07939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10803-PA | 1914 | CG10803-RA | 1034..1914 | 897..17 | 4330 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10803-RD | 4798 | CG10803-RD | 1219..2100 | 897..16 | 4365 | 99.7 | Minus |
CG10803-RC | 2890 | CG10803-RC | 1321..2202 | 897..16 | 4365 | 99.7 | Minus |
CG10803-RB | 2896 | CG10803-RB | 1327..2208 | 897..16 | 4365 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3487165..3487530 | 897..532 | 1785 | 99.2 | Minus |
X | 23542271 | X | 3487597..3487789 | 531..339 | 965 | 100 | Minus |
X | 23542271 | X | 3487839..3488022 | 342..159 | 920 | 100 | Minus |
X | 23542271 | X | 3488075..3488217 | 158..16 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:09:30 has no hits.
BS07939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:29 Download gff for
BS07939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-PA | 1036..1914 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:02 Download gff for
BS07939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-PA | 1036..1914 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:04:06 Download gff for
BS07939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-RB | 1327..2208 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:41 Download gff for
BS07939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-RB | 1327..2208 | 16..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:41 Download gff for
BS07939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3487165..3487530 | 532..897 | 99 | -> | Minus |
X | 3487597..3487787 | 341..531 | 100 | -> | Minus |
X | 3487841..3488022 | 159..340 | 100 | -> | Minus |
X | 3488075..3488217 | 16..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:04:06 Download gff for
BS07939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3381198..3381563 | 532..897 | 99 | -> | Minus |
arm_X | 3381630..3381820 | 341..531 | 100 | -> | Minus |
arm_X | 3381874..3382055 | 159..340 | 100 | -> | Minus |
arm_X | 3382108..3382250 | 16..158 | 100 | | Minus |
BS07939.5prime Sequence
862 bp (810 high quality bases) assembled on 2006-01-06
> BS07939.5prime
GAAGTTATCAGTCGACATGAAAAAGGGCAAGGGATCAAGCTCCCTTGGAT
CGAAGGAATCATCGGGGAGACCATCCACGGCAGTCCTGGTGTTCAAGAAG
TGCGCTAGATTTGCGGACTCTTCAGAATCGGCGGAGATCCAGCAGGACGG
CAAGGAGCAACTGCCTGAGAGGCAAGACTCGCTGGATGCCAAGGAATCTG
CAGGAATGGAAAAAGAGGCGATTAGCAATCAGCCATTAAAGGATGAGCCA
TCGAAAGATGAACCTAACCAAAGCGAGGGCACTGCCATTTCCACCATACC
GGCGATTGATAAACTACGTCGCTTCTGCTTTATTGGATCCACGGACGAGC
CCGTCTATACCACGCCCGCACTGGATCTTGTTGTCGAGAACAATTTCGCA
TCGCTAAAGGAACTCTGCTCCCAAGTGAGTGAAGACGAGCTGGTCGAGTG
CTTGTTGAGCGTTTTGGGCAGCGAACCAAATGAGGAGCAACCTCCCCGAC
CCGACGAGCCGCTCCTAATCCTGGCTGTTTTCTTTACCACGTGCGAAGAC
GAGAAGAAGCGAAATGCGGTGCGTAATAGATTCACCGACCTGATCACCAG
CGAATCGGATCTTCTACTGTTCGTCCAGTTGGTCAAGCGAGTCCAGAAGT
TGCTCGAACGTAAAACGCCCTTCAATCGCACAGTGCGAAAGGCCGTCCTC
AACTGGTATGGCACGAAATCGCTTGATCGCCTTCTCCACTTCTGGTCAAT
AGGCGATGGAAATCGTTGGCCTGCGCATCGCGATCTACTGTACCGCCTCC
ATTTTCGGCATGCCAATTTTTTACCGGAAATCATTGCTGCCTTAAGGCTG
CTCTCATCATCG
BS07939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10803-PA | 1914 | CG10803-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10803-RE | 4744 | CG10803-RE | 191..1037 | 16..862 | 4235 | 100 | Plus |
CG10803-RA | 2794 | CG10803-RA | 191..1037 | 16..862 | 4235 | 100 | Plus |
CG10803-RD | 4798 | CG10803-RD | 191..1031 | 16..862 | 4135 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3486313..3486977 | 198..862 | 3325 | 100 | Plus |
X | 23542271 | X | 3485840..3486021 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:01:29 has no hits.
BS07939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:30 Download gff for
BS07939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:03 Download gff for
BS07939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:54 Download gff for
BS07939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-RA | 183..1037 | 7..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:20:20 Download gff for
BS07939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-RA | 183..1037 | 7..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:20:20 Download gff for
BS07939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3485832..3486021 | 7..197 | 97 | -> | Plus |
X | 3486313..3486977 | 198..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:54 Download gff for
BS07939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3379865..3380054 | 7..197 | 97 | -> | Plus |
arm_X | 3380346..3381010 | 198..862 | 100 | | Plus |
BS07939.complete Sequence
1946 bp assembled on 2009-08-24
GenBank Submission: KX802066
> BS07939.complete
GAAGTTATCAGTCGACATGAAAAAGGGCAAGGGATCAAGCTCCCTTGGAT
CGAAGGAATCATCGGGGAGACCATCCACGGCAGTCCTGGTGTTCAAGAAG
TGCGCTAGATTTGCGGACTCTTCAGAATCGGCGGAGATCCAGCAGGACGG
CAAGGAGCAACTGCCTGAGAGGCAAGACTCGCTGGATGCCAAGGAATCTG
CAGGAATGGAAAAAGAGGCGATTAGCAATCAGCCATTAAAGGATGAGCCA
TCGAAAGATGAACCTAACCAAAGCGAGGGCACTGCCATTTCCACCATACC
GGCGATTGATAAACTACGTCGCTTCTGCTTTATTGGATCCACGGACGAGC
CCGTCTATACCACGCCCGCACTGGATCTTGTTGTCGAGAACAATTTCGCA
TCGCTAAAGGAACTCTGCTCCCAAGTGAGTGAAGACGAGCTGGTCGAGTG
CTTGTTGAGCGTTTTGGGCAGCGAACCAAATGAGGAGCAACCTCCCCGAC
CCGACGAGCCGCTCCTAATCCTGGCTGTTTTCTTTACCACGTGCGAAGAC
GAGAAGAAGCGAAATGCGGTGCGTAATAGATTCACCGACCTGATCACCAG
CGAATCGGATCTTCTACTGTTCGTCCAGTTGGTCAAGCGAGTCCAGAAGT
TGCTCGAACGTAAAACGCCCTTCAATCGCACAGTGCGAAAGGCCGTCCTC
AACTGGTATGGCACGAAATCGCTTGATCGCCTTCTCCACTTCTGGTCAAT
AGGCGATGGAAATCGTTGGCCTGCGCATCGCGATCTACTGTACCGCCTCC
ATTTTCGGCATGCCAATTTTTTACCGGAAATCATTGCTGCCTTAAGGCTG
CTCTCATCATCGCCAAAGGAGCTATCGCAGTGGCCTGATTTTTTAACGCC
CTTGACCAGCTTTCGCGAAACTATTGAGGGTGTTGTGAAGCTTCGGCTAC
TCACGGATCCCGAACAGGCTATCTCCATTGTGAAGAAGTTGTCGCTGAGC
TGGGAGCATGTGCCTTTTCATTTGCTTCACGACCCCAGGCTGGCGCATTT
TCTTATTCCACACATGAGCTATGAGCAACTTCTTCAGAAATGGCCACGCC
TCTCGCGACTTAACTCCCGAGTGCGCCCCTTTGCTGAGCAATTGCTGGAT
AAGAAGAAGCTTAAGGCGAGCAATGTTCCGCCCGTACGTCTGCTGTTGGA
GGATATGCGTTTGAGGAAGCCCAAAAAGGTGGTTAATCAGTTGGTACTAC
CTTCGTCACTCAAAAACAAGAATACATTTAAATTCCAGTGTGCAACTACT
TCGTTCCAAAAGGCGAGTTTCCTGCATAGCGTCTACGAAATATCCTTTGG
CCTGAACAAGGCACTCGGTAGGCGACTGCACATTACCCTCAATCTGGAGC
AGGCCTATCTGGGCAAATACCTTTCTGGTCCATGTCGTTCGCTGAAGTAC
TTAGACGCCCTGGTGGCATTGGGTTTTGGCTATTTCCGCAGCGACCGAAA
GGTGACGGTGGAGTTTTGGCACGACCGCAGTGGCAAATTGAAGGCGTTGC
CGTGGACAAATGAGATGTCTGTTTCAGAGGCCAAGACCTGTTGCGAGAAT
CAGAAGGTGGGCAAAGTGAGGCAATCGCTAAATGAAATTCTGTTCAGAGC
GCTATTGGATATGCAGAATACGTTCGACGTGTTTTTGGTACTAGTGCCGG
GTGCCGCGCGAGGAAATCCGGAAAATAATTCAAAGTGCTTGGCTGCTCTA
ATGGATAAGTATCGCGAAAAGCGAAACTCTAATGCTAAATTCATAATGGT
GAGCCTGCGGCAGCGTCAACGCTCCATGATATATTCCAGCGGACGAAACG
AGAACTTGTTAGAGTTGTGCAGCCTGGATAAGCACACACCGCGTTTGATT
AACGCATTTGTCCGCAATAAGTTCTACTAGAAGCTTTCTAGACCAT
BS07939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10803-RA | 1914 | CG10803-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
CG10803-RD | 1725 | CG10803-PD | 1..1725 | 206..1930 | 8625 | 100 | Plus |
CG10803-RC | 1725 | CG10803-PC | 1..1725 | 206..1930 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10803-RA | 2794 | CG10803-RA | 191..2106 | 16..1931 | 9580 | 100 | Plus |
CG10803-RD | 4798 | CG10803-RD | 191..2100 | 16..1931 | 9455 | 99.7 | Plus |
CG10803-RC | 2890 | CG10803-RC | 469..2202 | 198..1931 | 8670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3486313..3487530 | 198..1415 | 6090 | 100 | Plus |
X | 23542271 | X | 3487597..3487789 | 1416..1608 | 965 | 100 | Plus |
X | 23542271 | X | 3487839..3488022 | 1605..1788 | 920 | 100 | Plus |
X | 23542271 | X | 3485840..3486021 | 16..197 | 910 | 100 | Plus |
X | 23542271 | X | 3488075..3488217 | 1789..1931 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:32:53 has no hits.
BS07939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:55 Download gff for
BS07939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-RA | 189..2102 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:44 Download gff for
BS07939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-RA | 192..2105 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:10 Download gff for
BS07939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10803-RA | 192..2105 | 17..1930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:10 Download gff for
BS07939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3488075..3488216 | 1789..1930 | 100 | | Plus |
X | 3487841..3488022 | 1607..1788 | 100 | -> | Plus |
X | 3485841..3486021 | 17..197 | 100 | -> | Plus |
X | 3486313..3487530 | 198..1415 | 100 | -> | Plus |
X | 3487597..3487787 | 1416..1606 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:44 Download gff for
BS07939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3381874..3382055 | 1607..1788 | 100 | -> | Plus |
arm_X | 3382108..3382249 | 1789..1930 | 100 | | Plus |
arm_X | 3379874..3380054 | 17..197 | 100 | -> | Plus |
arm_X | 3380346..3381563 | 198..1415 | 100 | -> | Plus |
arm_X | 3381630..3381820 | 1416..1606 | 100 | -> | Plus |
BS07939.pep Sequence
Translation from 16 to 1929
> BS07939.pep
MKKGKGSSSLGSKESSGRPSTAVLVFKKCARFADSSESAEIQQDGKEQLP
ERQDSLDAKESAGMEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKL
RRFCFIGSTDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVL
GSEPNEEQPPRPDEPLLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLL
LFVQLVKRVQKLLERKTPFNRTVRKAVLNWYGTKSLDRLLHFWSIGDGNR
WPAHRDLLYRLHFRHANFLPEIIAALRLLSSSPKELSQWPDFLTPLTSFR
ETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPFHLLHDPRLAHFLIPHM
SYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRLLLEDMRLR
KPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKAL
GRRLHITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEF
WHDRSGKLKALPWTNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQ
NTFDVFLVLVPGAARGNPENNSKCLAALMDKYREKRNSNAKFIMVSLRQR
QRSMIYSSGRNENLLELCSLDKHTPRLINAFVRNKFY*
BS07939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10803-PA | 637 | CG10803-PA | 1..637 | 1..637 | 3282 | 100 | Plus |
CG10803-PE | 617 | CG10803-PE | 1..617 | 1..637 | 3152 | 96.9 | Plus |
CG10803-PD | 574 | CG10803-PD | 1..574 | 64..637 | 2972 | 100 | Plus |
CG10803-PC | 574 | CG10803-PC | 1..574 | 64..637 | 2972 | 100 | Plus |
CG10803-PB | 574 | CG10803-PB | 1..574 | 64..637 | 2972 | 100 | Plus |