Clone BS07939 Report

Search the DGRC for BS07939

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG10803-RA
Protein status:BS07939.pep: full length peptide match
Sequenced Size:1946

Clone Sequence Records

BS07939.3prime Sequence

897 bp (831 high quality bases) assembled on 2006-01-06

> BS07939.3prime
ATGGTCTAGAAAGCTTCTAGTAGAACTTATTGCGGACAAATGCGTTAATC
AAACGCGGTGTGTGCTTATCCAGGCTGCACAACTCTAACAAGTTCTCGTT
TCGTCCGCTGGAATATATCATGGAGCGTTGACGCTGCCGCAGGCTCACCA
TTATGAATTTAGCATTAGAGTTTCGCTTTTCGCGATACTTATCCATTAGA
GCAGCCAAGCACTTTGAATTATTTTCCGGATTTCCTCGCGCGGCACCCGG
CACTAGTACCAAAAACACGTCGAACGTATTCTGCATATCCAATAGCGCTC
TGAACAGAATTTCATTTAGCGATTGCCTCACTTTGCCCACCTTCTGATTC
TCGCAACAGGTCTTGGCCTCTGAAACAGACATCTCATTTGTCCACGGCAA
CGCCTTCAATTTGCCACTGCGGTCGTGCCAAAACTCCACCGTCACCTTTC
GGTCGCTGCGGAAATAGCCAAAACCCAATGCCACCAGGGCGTCTAAGTAC
TTCAGCGAACGACATGGACCAGAAAGGTATTTGCCCAGATAGGCCTGCTC
CAGATTGAGGGTAATGTGCAGTCGCCTACCGAGTGCCTTGTTCAGGCCAA
AGGATATTTCGTAGACGCTATGCAGGAAACTCGCCTTTTGGAACGAAGTA
GTTGCACACTGGAATTTAAATGTATTCTTGTTTTTGAGTGACGAAGGTAG
TACCAACTGATTAACCACCTTTTTGGGCTTCCTCAAACGCATATCCTCCA
ACAGCAGACGTACGGGCGGAACATTGCTCGCCTTAAGCTTCTTCTTATCC
AGCAATTGCTCAGCAAAGGGGCGCACTCGGGAGTTAAGTCGCGAGAGGCG
TGCCCATTTCTGAAGAAAGTGCTCATAGCTCATGTGTGGAATAAGAA

BS07939.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10803-PA 1914 CG10803-RA 1034..1914 897..17 4330 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10803-RD 4798 CG10803-RD 1219..2100 897..16 4365 99.7 Minus
CG10803-RC 2890 CG10803-RC 1321..2202 897..16 4365 99.7 Minus
CG10803-RB 2896 CG10803-RB 1327..2208 897..16 4365 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3487165..3487530 897..532 1785 99.2 Minus
X 23542271 X 3487597..3487789 531..339 965 100 Minus
X 23542271 X 3487839..3488022 342..159 920 100 Minus
X 23542271 X 3488075..3488217 158..16 715 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:09:30 has no hits.

BS07939.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:29 Download gff for BS07939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-PA 1036..1914 17..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:02 Download gff for BS07939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-PA 1036..1914 17..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:04:06 Download gff for BS07939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-RB 1327..2208 16..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:41 Download gff for BS07939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-RB 1327..2208 16..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:41 Download gff for BS07939.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3487165..3487530 532..897 99 -> Minus
X 3487597..3487787 341..531 100 -> Minus
X 3487841..3488022 159..340 100 -> Minus
X 3488075..3488217 16..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:04:06 Download gff for BS07939.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3381198..3381563 532..897 99 -> Minus
arm_X 3381630..3381820 341..531 100 -> Minus
arm_X 3381874..3382055 159..340 100 -> Minus
arm_X 3382108..3382250 16..158 100   Minus

BS07939.5prime Sequence

862 bp (810 high quality bases) assembled on 2006-01-06

> BS07939.5prime
GAAGTTATCAGTCGACATGAAAAAGGGCAAGGGATCAAGCTCCCTTGGAT
CGAAGGAATCATCGGGGAGACCATCCACGGCAGTCCTGGTGTTCAAGAAG
TGCGCTAGATTTGCGGACTCTTCAGAATCGGCGGAGATCCAGCAGGACGG
CAAGGAGCAACTGCCTGAGAGGCAAGACTCGCTGGATGCCAAGGAATCTG
CAGGAATGGAAAAAGAGGCGATTAGCAATCAGCCATTAAAGGATGAGCCA
TCGAAAGATGAACCTAACCAAAGCGAGGGCACTGCCATTTCCACCATACC
GGCGATTGATAAACTACGTCGCTTCTGCTTTATTGGATCCACGGACGAGC
CCGTCTATACCACGCCCGCACTGGATCTTGTTGTCGAGAACAATTTCGCA
TCGCTAAAGGAACTCTGCTCCCAAGTGAGTGAAGACGAGCTGGTCGAGTG
CTTGTTGAGCGTTTTGGGCAGCGAACCAAATGAGGAGCAACCTCCCCGAC
CCGACGAGCCGCTCCTAATCCTGGCTGTTTTCTTTACCACGTGCGAAGAC
GAGAAGAAGCGAAATGCGGTGCGTAATAGATTCACCGACCTGATCACCAG
CGAATCGGATCTTCTACTGTTCGTCCAGTTGGTCAAGCGAGTCCAGAAGT
TGCTCGAACGTAAAACGCCCTTCAATCGCACAGTGCGAAAGGCCGTCCTC
AACTGGTATGGCACGAAATCGCTTGATCGCCTTCTCCACTTCTGGTCAAT
AGGCGATGGAAATCGTTGGCCTGCGCATCGCGATCTACTGTACCGCCTCC
ATTTTCGGCATGCCAATTTTTTACCGGAAATCATTGCTGCCTTAAGGCTG
CTCTCATCATCG

BS07939.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10803-PA 1914 CG10803-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10803-RE 4744 CG10803-RE 191..1037 16..862 4235 100 Plus
CG10803-RA 2794 CG10803-RA 191..1037 16..862 4235 100 Plus
CG10803-RD 4798 CG10803-RD 191..1031 16..862 4135 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3486313..3486977 198..862 3325 100 Plus
X 23542271 X 3485840..3486021 16..197 910 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:01:29 has no hits.

BS07939.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:30 Download gff for BS07939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:03 Download gff for BS07939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:54 Download gff for BS07939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-RA 183..1037 7..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:20:20 Download gff for BS07939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10803-RA 183..1037 7..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:20:20 Download gff for BS07939.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3485832..3486021 7..197 97 -> Plus
X 3486313..3486977 198..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:54 Download gff for BS07939.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3379865..3380054 7..197 97 -> Plus
arm_X 3380346..3381010 198..862 100   Plus

BS07939.complete Sequence

1946 bp assembled on 2009-08-24

GenBank Submission: KX802066

> BS07939.complete
GAAGTTATCAGTCGACATGAAAAAGGGCAAGGGATCAAGCTCCCTTGGAT
CGAAGGAATCATCGGGGAGACCATCCACGGCAGTCCTGGTGTTCAAGAAG
TGCGCTAGATTTGCGGACTCTTCAGAATCGGCGGAGATCCAGCAGGACGG
CAAGGAGCAACTGCCTGAGAGGCAAGACTCGCTGGATGCCAAGGAATCTG
CAGGAATGGAAAAAGAGGCGATTAGCAATCAGCCATTAAAGGATGAGCCA
TCGAAAGATGAACCTAACCAAAGCGAGGGCACTGCCATTTCCACCATACC
GGCGATTGATAAACTACGTCGCTTCTGCTTTATTGGATCCACGGACGAGC
CCGTCTATACCACGCCCGCACTGGATCTTGTTGTCGAGAACAATTTCGCA
TCGCTAAAGGAACTCTGCTCCCAAGTGAGTGAAGACGAGCTGGTCGAGTG
CTTGTTGAGCGTTTTGGGCAGCGAACCAAATGAGGAGCAACCTCCCCGAC
CCGACGAGCCGCTCCTAATCCTGGCTGTTTTCTTTACCACGTGCGAAGAC
GAGAAGAAGCGAAATGCGGTGCGTAATAGATTCACCGACCTGATCACCAG
CGAATCGGATCTTCTACTGTTCGTCCAGTTGGTCAAGCGAGTCCAGAAGT
TGCTCGAACGTAAAACGCCCTTCAATCGCACAGTGCGAAAGGCCGTCCTC
AACTGGTATGGCACGAAATCGCTTGATCGCCTTCTCCACTTCTGGTCAAT
AGGCGATGGAAATCGTTGGCCTGCGCATCGCGATCTACTGTACCGCCTCC
ATTTTCGGCATGCCAATTTTTTACCGGAAATCATTGCTGCCTTAAGGCTG
CTCTCATCATCGCCAAAGGAGCTATCGCAGTGGCCTGATTTTTTAACGCC
CTTGACCAGCTTTCGCGAAACTATTGAGGGTGTTGTGAAGCTTCGGCTAC
TCACGGATCCCGAACAGGCTATCTCCATTGTGAAGAAGTTGTCGCTGAGC
TGGGAGCATGTGCCTTTTCATTTGCTTCACGACCCCAGGCTGGCGCATTT
TCTTATTCCACACATGAGCTATGAGCAACTTCTTCAGAAATGGCCACGCC
TCTCGCGACTTAACTCCCGAGTGCGCCCCTTTGCTGAGCAATTGCTGGAT
AAGAAGAAGCTTAAGGCGAGCAATGTTCCGCCCGTACGTCTGCTGTTGGA
GGATATGCGTTTGAGGAAGCCCAAAAAGGTGGTTAATCAGTTGGTACTAC
CTTCGTCACTCAAAAACAAGAATACATTTAAATTCCAGTGTGCAACTACT
TCGTTCCAAAAGGCGAGTTTCCTGCATAGCGTCTACGAAATATCCTTTGG
CCTGAACAAGGCACTCGGTAGGCGACTGCACATTACCCTCAATCTGGAGC
AGGCCTATCTGGGCAAATACCTTTCTGGTCCATGTCGTTCGCTGAAGTAC
TTAGACGCCCTGGTGGCATTGGGTTTTGGCTATTTCCGCAGCGACCGAAA
GGTGACGGTGGAGTTTTGGCACGACCGCAGTGGCAAATTGAAGGCGTTGC
CGTGGACAAATGAGATGTCTGTTTCAGAGGCCAAGACCTGTTGCGAGAAT
CAGAAGGTGGGCAAAGTGAGGCAATCGCTAAATGAAATTCTGTTCAGAGC
GCTATTGGATATGCAGAATACGTTCGACGTGTTTTTGGTACTAGTGCCGG
GTGCCGCGCGAGGAAATCCGGAAAATAATTCAAAGTGCTTGGCTGCTCTA
ATGGATAAGTATCGCGAAAAGCGAAACTCTAATGCTAAATTCATAATGGT
GAGCCTGCGGCAGCGTCAACGCTCCATGATATATTCCAGCGGACGAAACG
AGAACTTGTTAGAGTTGTGCAGCCTGGATAAGCACACACCGCGTTTGATT
AACGCATTTGTCCGCAATAAGTTCTACTAGAAGCTTTCTAGACCAT

BS07939.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10803-RA 1914 CG10803-PA 1..1914 17..1930 9570 100 Plus
CG10803-RD 1725 CG10803-PD 1..1725 206..1930 8625 100 Plus
CG10803-RC 1725 CG10803-PC 1..1725 206..1930 8625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10803-RA 2794 CG10803-RA 191..2106 16..1931 9580 100 Plus
CG10803-RD 4798 CG10803-RD 191..2100 16..1931 9455 99.7 Plus
CG10803-RC 2890 CG10803-RC 469..2202 198..1931 8670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3486313..3487530 198..1415 6090 100 Plus
X 23542271 X 3487597..3487789 1416..1608 965 100 Plus
X 23542271 X 3487839..3488022 1605..1788 920 100 Plus
X 23542271 X 3485840..3486021 16..197 910 100 Plus
X 23542271 X 3488075..3488217 1789..1931 715 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:32:53 has no hits.

BS07939.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:55 Download gff for BS07939.complete
Subject Subject Range Query Range Percent Splice Strand
CG10803-RA 189..2102 17..1930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:44 Download gff for BS07939.complete
Subject Subject Range Query Range Percent Splice Strand
CG10803-RA 192..2105 17..1930 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:10 Download gff for BS07939.complete
Subject Subject Range Query Range Percent Splice Strand
CG10803-RA 192..2105 17..1930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:10 Download gff for BS07939.complete
Subject Subject Range Query Range Percent Splice Strand
X 3488075..3488216 1789..1930 100   Plus
X 3487841..3488022 1607..1788 100 -> Plus
X 3485841..3486021 17..197 100 -> Plus
X 3486313..3487530 198..1415 100 -> Plus
X 3487597..3487787 1416..1606 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:44 Download gff for BS07939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3381874..3382055 1607..1788 100 -> Plus
arm_X 3382108..3382249 1789..1930 100   Plus
arm_X 3379874..3380054 17..197 100 -> Plus
arm_X 3380346..3381563 198..1415 100 -> Plus
arm_X 3381630..3381820 1416..1606 100 -> Plus

BS07939.pep Sequence

Translation from 16 to 1929

> BS07939.pep
MKKGKGSSSLGSKESSGRPSTAVLVFKKCARFADSSESAEIQQDGKEQLP
ERQDSLDAKESAGMEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKL
RRFCFIGSTDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVL
GSEPNEEQPPRPDEPLLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLL
LFVQLVKRVQKLLERKTPFNRTVRKAVLNWYGTKSLDRLLHFWSIGDGNR
WPAHRDLLYRLHFRHANFLPEIIAALRLLSSSPKELSQWPDFLTPLTSFR
ETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPFHLLHDPRLAHFLIPHM
SYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRLLLEDMRLR
KPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKAL
GRRLHITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEF
WHDRSGKLKALPWTNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQ
NTFDVFLVLVPGAARGNPENNSKCLAALMDKYREKRNSNAKFIMVSLRQR
QRSMIYSSGRNENLLELCSLDKHTPRLINAFVRNKFY*

BS07939.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10803-PA 637 CG10803-PA 1..637 1..637 3282 100 Plus
CG10803-PE 617 CG10803-PE 1..617 1..637 3152 96.9 Plus
CG10803-PD 574 CG10803-PD 1..574 64..637 2972 100 Plus
CG10803-PC 574 CG10803-PC 1..574 64..637 2972 100 Plus
CG10803-PB 574 CG10803-PB 1..574 64..637 2972 100 Plus