Clone Sequence Records
BS07944.3prime Sequence
902 bp (824 high quality bases) assembled on 2006-01-06
> BS07944.3prime
ATGGTCTAGAAAGCTTTTAGATTTCATGTTTTTCCAGCAGCGGAAGATTG
CAGGTTGTGGTGCGATTCTGTGGATCCTGGAGACCATTGACTTCGTTGAC
AAGATTTTGAGCCTGCGCAAGTTGTTTGCTCCGATGGGTGCGATATAACC
AGGTCGCCGAAACAAGTAAGGCGACCAGCAATATGGCTGCGCACACAGCT
ACTACTACTACGACTACCATTGGGTAATCTCGGACTGCTTCCAGCTTTTT
CTGATTCAGCTCCAGTTTGCCCACGATCGCCAGGAGTTGATTAAATGATT
CCAAGGTCACGGATTCCTGGGAAGATTTTGGTTCCTTCTGCAGCGTTGCG
TAACCTGCTTTCGAAGGAACTCTTTCCCGGACTTCTCCACGGAGGGCGAC
AGCTGGACTGCGCACGGCACAGTCGCTTTGAATGCTCAGGATTCCACTGC
CATTCAATTGGAGCTCCTGCCTCTCACCGGAGCACACTCCTATTAAAGTT
AGCTCATTGGTAAGGGCCACCATCCAGGAGTTTGGTGCCACCATCTCTGT
CCACAGACTCTTCTCCTTCACTTGACGCAAGGTGCAGACTTCGGAAGACT
GGTTCCGTATGGCCGCCAGGGAGCAGGCAAAACTGTCATCCCCAGTCCCG
TAGATAATGCGGTTGCGCCTGCAGATGAACCTTTCTTCGCCCAACTTGAT
GCAGTCGTCCAAGCTCTGAAGCGGAAAATACCTGTCCATATGATCGTTGA
TGCCCAGATAAGGTGTTTCGGTGTCCACCAGTTGGATTACGCCATTGTTT
AACCGTGGAATGGGCGTCAATCGGTAGATATTAAACTTCTCCGCATCGAG
CAAGGGCACTGTGATTTGGAACTCCACGTGGTTGCCCCGCTGCCGAGGAA
CT
BS07944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4715-PA | 1596 | Iris-RA | 711..1596 | 902..17 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iris-RA | 1767 | CG4715-RA | 736..1623 | 902..15 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1132476..1133363 | 15..902 | 4440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:18:59 has no hits.
BS07944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:39 Download gff for
BS07944.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-PA | 711..1596 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:17 Download gff for
BS07944.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4715-PA | 711..1596 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:37 Download gff for
BS07944.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 736..1623 | 15..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:48 Download gff for
BS07944.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 736..1623 | 15..902 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:48 Download gff for
BS07944.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1132476..1133363 | 15..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:37 Download gff for
BS07944.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1132476..1133363 | 15..902 | 100 | | Plus |
BS07944.5prime Sequence
861 bp (792 high quality bases) assembled on 2006-01-06
> BS07944.5prime
GAAGTTATCAGTCGACATGAAAGCGATTAGTTTGGTATTCATCCTCGCCC
CCTCGCTGATAGCGCTCTCCCATGGAAGCCCAGTTGATCGGGAGGCGATC
GGAGGTCCGATGGCGATGCGGGGATTCAACAACAGTCTGGGCACCTTCGT
GGAGTACAGCGGTCAGGCATCGCTAGCCTCCAGAGATTGGAAGTTATGTG
CCAGCTTCAACTTGGAGTCGCTTTATACGGCAATACGTGCGTTCAATGGT
GTCTACAAGGCTTTGGTCGATGTGTGCGATATCCAAAGGAATCTTTGTCC
AGAAATTCTGGACATTACCAAGTTTGCGGATAGTATTCTTCACGATGGAC
TAATTGACTTGGAGAAAGCGTTGGACTTTAGGGCCGGACGACTTTCTTTG
GGAGATGACGACGTGTCCATCGAGCTTGGGATGGGAACATCCTGCATTGA
CAGCTCCATTAATGTTATAAATGTGATACTTCAAGAACCCTTTCACGAGG
CTTATGAACCTGAAAACCTGATTATGATGAAGCCGTATCTATACCTTATG
GGCAGCAGACTAAAAAGTGCCCAGAATGCCATAACTGAAGCCATAATCTC
TGCCCACCACGGAAAGCTTAGTCCTCTTGTCCTTTCAATGAAACAGCTGC
AAGCGAAGATGCCGCCAATTCTGGGAGATCTGGATGGCCGATATACAATC
CGGAATATTTACCTTCTCGCCTCCGTAGTTCCTCGGCAGCGGGGCAACCA
CGTGGAGTTCCAAATCACAGTGCCCTTGCTCGATGCGGAGAAGTTTATAT
CTACCGATTGACGCCCATTCCACGGTTAAACAATGGCGTAATCCAACTGG
TGGACACCGAA
BS07944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4715-PA | 1596 | Iris-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
| CG4715-PA | 1596 | Iris-RA | 782..846 | 797..861 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iris-RA | 1767 | CG4715-RA | 26..871 | 17..861 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1133228..1134073 | 861..17 | 4180 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:20:48 has no hits.
BS07944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:40 Download gff for
BS07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-PA | 1..844 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:18 Download gff for
BS07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4715-PA | 1..844 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:36:57 Download gff for
BS07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 18..871 | 10..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:12 Download gff for
BS07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 18..871 | 10..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:12 Download gff for
BS07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1133228..1134081 | 10..861 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:36:57 Download gff for
BS07944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1133228..1134081 | 10..861 | 99 | | Minus |
BS07944.complete Sequence
1628 bp (1628 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636037
> BS07944.complete
GAAGTTATCAGTCGACATGAAAGCGATTAGTTTGGTATTCATCCTCGCCC
CCTCGCTGATAGCGCTCTCCCATGGAAGCCCAGTTGATCGGGAGGCGATC
GGAGGTCCGATGGCGATGCGGGGATTCAACAACAGTCTGGGCACCTTCGT
GGAGTACAGCGGTCAGGCATCGCTAGCCTCCAGAGATTGGAAGTTATGTG
CCAGCTTCAACTTGGAGTCGCTTTATACGGCAATACGTGCGTTCAATGGT
GTCTACAAGGCTTTGGTCGATGTGTGCGATATCCAAAGGAATCTTTGTCC
AGAAATTCTGGACATTACCAAGTTTGCGGATAGTATTCTTCACGATGGAC
TAATTGACTTGGAGAAAGCGTTGGACTTTAGGGCCGGACGACTTTCTTTG
GGAGATGACGACGTGTCCATCGAGCTTGGGATGGGAACATCCTGCATTGA
CAGCTCCATTAATGTTATAAATGTGATACTTCAAGAACCCTTTCACGAGG
CTTATGAACCTGAAAACCTGATTATGATGAAGCCGTATCTATACCTTATG
GGCAGCAGACTAAAAAGTGCCCAGAATGCCATAACTGAAGCCATAATCTC
TGCCCACCACGGAAAGCTTAGTCCTCTTGTCCTTTCAATGAAACAGCTGC
AAGCGAAGATGCCGCCAATTCTGGGAGATCTGGATGGCCGATATACAATC
CGGAATATTTACCTTCTCGCCTCCGTAGTTCCTCGGCAGCGGGGCAACCA
CGTGGAGTTCCAAATCACAGTGCCCTTGCTCGATGCGGAGAAGTTTAATA
TCTACCGATTGACGCCCATTCCACGGTTAAACAATGGCGTAATCCAACTG
GTGGACACCGAAACACCTTATCTGGGCATCAACGATCATATGGACAGGTA
TTTTCCGCTTCAGAGCTTGGACGACTGCATCAAGTTGGGCGAAGAAAGGT
TCATCTGCAGGCGCAACCGCATTATCTACGGGACTGGGGATGACAGTTTT
GCCTGCTCCCTGGCGGCCATACGGAACCAGTCTTCCGAAGTCTGCACCTT
GCGTCAAGTGAAGGAGAAGAGTCTGTGGACAGAGATGGTGGCACCAAACT
CCTGGATGGTGGCCCTTACCAATGAGCTAACTTTAATAGGAGTGTGCTCC
GGTGAGAGGCAGGAGCTCCAATTGAATGGCAGTGGAATCCTGAGCATTCA
AAGCGACTGTGCCGTGCGCAGTCCAGCTGTCGCCCTCCGTGGAGAAGTCC
GGGAAAGAGTTCCTTCGAAAGCAGGTTACGCAACGCTGCAGAAGGAACCA
AAATCTTCCCAGGAATCCGTGACCTTGGAATCATTTAATCAACTCCTGGC
GATCGTGGGCAAACTGGAGCTGAATCAGAAAAAGCTGGAAGCAGTCCGAG
ATTACCCAATGGTAGTCGTAGTAGTAGTAGCTGTGTGCGCAGCCATATTG
CTGGTCGCCTTACTTGTTTCGGCGACCTGGTTATATCGCACCCATCGGAG
CAAACAACTTGCGCAGGCTCAAAATCTTGTCAACGAAGTCAATGGTCTCC
AGGATCCACAGAATCGCACCACAACCTGCAATCTTCCGCTGCTGGAAAAA
CATGAAATCTAAAAGCTTTCTAGACCAT
BS07944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iris-RA | 1596 | CG4715-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iris-RA | 1767 | CG4715-RA | 26..1623 | 17..1614 | 7990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1132476..1134073 | 1614..17 | 7990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:59:21 has no hits.
BS07944.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:15 Download gff for
BS07944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 1..1596 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:36 Download gff for
BS07944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 40..1645 | 10..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:33 Download gff for
BS07944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 26..1619 | 17..1610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:15 Download gff for
BS07944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 40..1645 | 10..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:24 Download gff for
BS07944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iris-RA | 26..1619 | 17..1610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:24 Download gff for
BS07944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1132480..1134073 | 17..1610 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:33 Download gff for
BS07944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1132480..1134073 | 17..1610 | 100 | | Minus |
BS07944.pep Sequence
Translation from 16 to 1611
> BS07944.pep
MKAISLVFILAPSLIALSHGSPVDREAIGGPMAMRGFNNSLGTFVEYSGQ
ASLASRDWKLCASFNLESLYTAIRAFNGVYKALVDVCDIQRNLCPEILDI
TKFADSILHDGLIDLEKALDFRAGRLSLGDDDVSIELGMGTSCIDSSINV
INVILQEPFHEAYEPENLIMMKPYLYLMGSRLKSAQNAITEAIISAHHGK
LSPLVLSMKQLQAKMPPILGDLDGRYTIRNIYLLASVVPRQRGNHVEFQI
TVPLLDAEKFNIYRLTPIPRLNNGVIQLVDTETPYLGINDHMDRYFPLQS
LDDCIKLGEERFICRRNRIIYGTGDDSFACSLAAIRNQSSEVCTLRQVKE
KSLWTEMVAPNSWMVALTNELTLIGVCSGERQELQLNGSGILSIQSDCAV
RSPAVALRGEVRERVPSKAGYATLQKEPKSSQESVTLESFNQLLAIVGKL
ELNQKKLEAVRDYPMVVVVVVAVCAAILLVALLVSATWLYRTHRSKQLAQ
AQNLVNEVNGLQDPQNRTTTCNLPLLEKHEI*
BS07944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iris-PA | 531 | CG4715-PA | 1..531 | 1..531 | 2699 | 100 | Plus |
