Clone Sequence Records
BS07946.3prime Sequence
663 bp (662 high quality bases) assembled on 2006-01-06
> BS07946.3prime
ATGGTCTAGAAAGCTTTTACGGATTGCTCATGCACTTTCTGTAGAGCTGC
GTGCGTCGCCAGCGGCATCGGGAAATCACTCCATTGACCGTCTGCACTTT
ATGCGGCATGCAGGCACTGTAGTTCGTCTCGCATTTTCCAAAAGGCGACC
ACTTGCATGTATCGGCATAGTTTCGTCCCTTAAAGCATCTCTCTCCAAAG
CAGGGAGTTACTGTGCAATTGGTGGCCTTGGCATATCCACCGCTGAAGCC
ATGACGCTCTGTTATGGTCATCCTGGTGTACTCCTTGTAGTAGCTGCATA
TATTTAATGTCGGCATCCTACCCGCTACTATATAAACTTTTCCCAGATCG
AGATTTATACCACACATTGCGTCATCTTGGGGCGTGGACAGGCGCCCATC
GCGTAGCATTCGTCGTGCTTCGGATGTAGCCTTGTAGGTGCGTTTGATGT
GAACTTTGTAGGTGGTCCTGCCGGGCTCGATGGTATCCGATTTGCGAAGG
ACTCGCAGTTGCACAACGTAGTCCGCCTGGGCGAAGTGCGTCTGTGGGTG
AGATGGCATGCAGCTGCAGGCATCCGCTGGGCGACCGTAAAACGCGAAAA
CGGCGACCAGGAGGAGCGTCAATAAACCCAAATGCTTTCTAAGATCCATG
TCGACTGATAACT
BS07946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6281-PA | 633 | Timp-RA | 1..633 | 649..17 | 3165 | 100 | Minus |
CG6281-PB | 633 | Timp-RB | 1..633 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 1591 | CG6281-RB | 319..953 | 650..16 | 3175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10204763..10204991 | 208..436 | 1130 | 99.6 | Plus |
3R | 32079331 | 3R | 10204513..10204708 | 16..211 | 980 | 100 | Plus |
3R | 32079331 | 3R | 10205250..10205383 | 517..650 | 670 | 100 | Plus |
3R | 32079331 | 3R | 10205092..10205179 | 430..517 | 440 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 20:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10062..10090 | 280..308 | 109 | 86.2 | Plus |
BS07946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:43 Download gff for
BS07946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:23 Download gff for
BS07946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6281-PB | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:13 Download gff for
BS07946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..953 | 16..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:12 Download gff for
BS07946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..953 | 16..657 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:12 Download gff for
BS07946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10205250..10205387 | 517..657 | 97 | | Plus |
3R | 10204767..10204985 | 212..430 | 100 | <- | Plus |
3R | 10205093..10205178 | 431..516 | 100 | <- | Plus |
3R | 10204513..10204708 | 16..211 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:13 Download gff for
BS07946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6030235..6030430 | 16..211 | 100 | <- | Plus |
arm_3R | 6030489..6030707 | 212..430 | 100 | <- | Plus |
arm_3R | 6030815..6030900 | 431..516 | 100 | <- | Plus |
arm_3R | 6030972..6031109 | 517..657 | 97 | | Plus |
BS07946.5prime Sequence
663 bp (662 high quality bases) assembled on 2006-01-06
> BS07946.5prime
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGTAAA
AGCTTTCTAGACC
BS07946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6281-PA | 633 | Timp-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
CG6281-PB | 633 | Timp-RB | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 1591 | CG6281-RB | 319..953 | 16..650 | 3175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10204763..10204991 | 458..230 | 1130 | 99.6 | Minus |
3R | 32079331 | 3R | 10204513..10204708 | 650..455 | 980 | 100 | Minus |
3R | 32079331 | 3R | 10205250..10205383 | 149..16 | 670 | 100 | Minus |
3R | 32079331 | 3R | 10205092..10205179 | 236..149 | 440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 10:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10062..10090 | 386..358 | 109 | 86.2 | Minus |
BS07946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:44 Download gff for
BS07946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:24 Download gff for
BS07946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6281-PB | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:47 Download gff for
BS07946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..953 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:02 Download gff for
BS07946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..953 | 9..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:02 Download gff for
BS07946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10204513..10204708 | 455..650 | 100 | <- | Minus |
3R | 10204767..10204985 | 236..454 | 100 | <- | Minus |
3R | 10205093..10205178 | 150..235 | 100 | <- | Minus |
3R | 10205250..10205387 | 9..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:47 Download gff for
BS07946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6030235..6030430 | 455..650 | 100 | <- | Minus |
arm_3R | 6030489..6030707 | 236..454 | 100 | <- | Minus |
arm_3R | 6030815..6030900 | 150..235 | 100 | <- | Minus |
arm_3R | 6030972..6031109 | 9..149 | 97 | | Minus |
BS07946.complete Sequence
665 bp (665 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636038
> BS07946.complete
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGTAAA
AGCTTTCTAGACCAT
BS07946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 633 | CG6281-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 1591 | CG6281-RB | 319..953 | 16..650 | 3175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10204763..10204991 | 458..230 | 1130 | 99.6 | Minus |
3R | 32079331 | 3R | 10204513..10204708 | 650..455 | 980 | 100 | Minus |
3R | 32079331 | 3R | 10205250..10205383 | 149..16 | 670 | 100 | Minus |
3R | 32079331 | 3R | 10205092..10205179 | 236..149 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10062..10090 | 386..358 | 109 | 86.2 | Minus |
BS07946.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:57 Download gff for
BS07946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:13 Download gff for
BS07946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 296..934 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:37 Download gff for
BS07946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 320..950 | 17..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:57 Download gff for
BS07946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 296..934 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:25 Download gff for
BS07946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 320..950 | 17..647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:25 Download gff for
BS07946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10205250..10205382 | 17..149 | 100 | | Minus |
3R | 10204516..10204708 | 455..647 | 100 | <- | Minus |
3R | 10204767..10204985 | 236..454 | 100 | <- | Minus |
3R | 10205093..10205178 | 150..235 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:37 Download gff for
BS07946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6030238..6030430 | 455..647 | 100 | <- | Minus |
arm_3R | 6030489..6030707 | 236..454 | 100 | <- | Minus |
arm_3R | 6030815..6030900 | 150..235 | 100 | <- | Minus |
arm_3R | 6030972..6031104 | 17..149 | 100 | | Minus |
BS07946.pep Sequence
Translation from 16 to 648
> BS07946.pep
MDLRKHLGLLTLLLVAVFAFYGRPADACSCMPSHPQTHFAQADYVVQLRV
LRKSDTIEPGRTTYKVHIKRTYKATSEARRMLRDGRLSTPQDDAMCGINL
DLGKVYIVAGRMPTLNICSYYKEYTRMTITERHGFSGGYAKATNCTVTPC
FGERCFKGRNYADTCKWSPFGKCETNYSACMPHKVQTVNGVISRCRWRRT
QLYRKCMSNP*
BS07946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-PB | 210 | CG6281-PB | 1..210 | 1..210 | 1150 | 100 | Plus |