Clone BS07946 Report

Search the DGRC for BS07946

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptTimp-RB
Protein status:BS07946.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07946.3prime Sequence

663 bp (662 high quality bases) assembled on 2006-01-06

> BS07946.3prime
ATGGTCTAGAAAGCTTTTACGGATTGCTCATGCACTTTCTGTAGAGCTGC
GTGCGTCGCCAGCGGCATCGGGAAATCACTCCATTGACCGTCTGCACTTT
ATGCGGCATGCAGGCACTGTAGTTCGTCTCGCATTTTCCAAAAGGCGACC
ACTTGCATGTATCGGCATAGTTTCGTCCCTTAAAGCATCTCTCTCCAAAG
CAGGGAGTTACTGTGCAATTGGTGGCCTTGGCATATCCACCGCTGAAGCC
ATGACGCTCTGTTATGGTCATCCTGGTGTACTCCTTGTAGTAGCTGCATA
TATTTAATGTCGGCATCCTACCCGCTACTATATAAACTTTTCCCAGATCG
AGATTTATACCACACATTGCGTCATCTTGGGGCGTGGACAGGCGCCCATC
GCGTAGCATTCGTCGTGCTTCGGATGTAGCCTTGTAGGTGCGTTTGATGT
GAACTTTGTAGGTGGTCCTGCCGGGCTCGATGGTATCCGATTTGCGAAGG
ACTCGCAGTTGCACAACGTAGTCCGCCTGGGCGAAGTGCGTCTGTGGGTG
AGATGGCATGCAGCTGCAGGCATCCGCTGGGCGACCGTAAAACGCGAAAA
CGGCGACCAGGAGGAGCGTCAATAAACCCAAATGCTTTCTAAGATCCATG
TCGACTGATAACT

BS07946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6281-PA 633 Timp-RA 1..633 649..17 3165 100 Minus
CG6281-PB 633 Timp-RB 1..633 649..17 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 1591 CG6281-RB 319..953 650..16 3175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10204763..10204991 208..436 1130 99.6 Plus
3R 32079331 3R 10204513..10204708 16..211 980 100 Plus
3R 32079331 3R 10205250..10205383 517..650 670 100 Plus
3R 32079331 3R 10205092..10205179 430..517 440 100 Plus
Blast to na_te.dros performed 2015-02-02 20:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10062..10090 280..308 109 86.2 Plus

BS07946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:43 Download gff for BS07946.3prime
Subject Subject Range Query Range Percent Splice Strand
Timp-PA 1..633 17..649 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:23 Download gff for BS07946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6281-PB 1..633 17..649 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:13 Download gff for BS07946.3prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..953 16..657 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:12 Download gff for BS07946.3prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..953 16..657 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:12 Download gff for BS07946.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10205250..10205387 517..657 97   Plus
3R 10204767..10204985 212..430 100 <- Plus
3R 10205093..10205178 431..516 100 <- Plus
3R 10204513..10204708 16..211 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:13 Download gff for BS07946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6030235..6030430 16..211 100 <- Plus
arm_3R 6030489..6030707 212..430 100 <- Plus
arm_3R 6030815..6030900 431..516 100 <- Plus
arm_3R 6030972..6031109 517..657 97   Plus

BS07946.5prime Sequence

663 bp (662 high quality bases) assembled on 2006-01-06

> BS07946.5prime
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGTAAA
AGCTTTCTAGACC

BS07946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6281-PA 633 Timp-RA 1..633 17..649 3165 100 Plus
CG6281-PB 633 Timp-RB 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 1591 CG6281-RB 319..953 16..650 3175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10204763..10204991 458..230 1130 99.6 Minus
3R 32079331 3R 10204513..10204708 650..455 980 100 Minus
3R 32079331 3R 10205250..10205383 149..16 670 100 Minus
3R 32079331 3R 10205092..10205179 236..149 440 100 Minus
Blast to na_te.dros performed 2015-02-04 10:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10062..10090 386..358 109 86.2 Minus

BS07946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:44 Download gff for BS07946.5prime
Subject Subject Range Query Range Percent Splice Strand
Timp-PA 1..633 17..649 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:24 Download gff for BS07946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6281-PB 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:47 Download gff for BS07946.5prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..953 9..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:02 Download gff for BS07946.5prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..953 9..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:02 Download gff for BS07946.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10204513..10204708 455..650 100 <- Minus
3R 10204767..10204985 236..454 100 <- Minus
3R 10205093..10205178 150..235 100 <- Minus
3R 10205250..10205387 9..149 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:47 Download gff for BS07946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6030235..6030430 455..650 100 <- Minus
arm_3R 6030489..6030707 236..454 100 <- Minus
arm_3R 6030815..6030900 150..235 100 <- Minus
arm_3R 6030972..6031109 9..149 97   Minus

BS07946.complete Sequence

665 bp (665 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636038

> BS07946.complete
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGTAAA
AGCTTTCTAGACCAT

BS07946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 633 CG6281-PB 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 1591 CG6281-RB 319..953 16..650 3175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10204763..10204991 458..230 1130 99.6 Minus
3R 32079331 3R 10204513..10204708 650..455 980 100 Minus
3R 32079331 3R 10205250..10205383 149..16 670 100 Minus
3R 32079331 3R 10205092..10205179 236..149 440 100 Minus
Blast to na_te.dros performed 2014-11-27 10:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10062..10090 386..358 109 86.2 Minus

BS07946.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:57 Download gff for BS07946.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:13 Download gff for BS07946.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 296..934 9..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:37 Download gff for BS07946.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 320..950 17..647 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:57 Download gff for BS07946.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 296..934 9..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:25 Download gff for BS07946.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 320..950 17..647 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:25 Download gff for BS07946.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10205250..10205382 17..149 100   Minus
3R 10204516..10204708 455..647 100 <- Minus
3R 10204767..10204985 236..454 100 <- Minus
3R 10205093..10205178 150..235 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:37 Download gff for BS07946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6030238..6030430 455..647 100 <- Minus
arm_3R 6030489..6030707 236..454 100 <- Minus
arm_3R 6030815..6030900 150..235 100 <- Minus
arm_3R 6030972..6031104 17..149 100   Minus

BS07946.pep Sequence

Translation from 16 to 648

> BS07946.pep
MDLRKHLGLLTLLLVAVFAFYGRPADACSCMPSHPQTHFAQADYVVQLRV
LRKSDTIEPGRTTYKVHIKRTYKATSEARRMLRDGRLSTPQDDAMCGINL
DLGKVYIVAGRMPTLNICSYYKEYTRMTITERHGFSGGYAKATNCTVTPC
FGERCFKGRNYADTCKWSPFGKCETNYSACMPHKVQTVNGVISRCRWRRT
QLYRKCMSNP*

BS07946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-PB 210 CG6281-PB 1..210 1..210 1150 100 Plus