Clone Sequence Records
BS07948.3prime Sequence
902 bp (780 high quality bases) assembled on 2006-01-06
> BS07948.3prime
ATGGTCTAGAAAGCTTTTAGCCAAGGAAAAGGCCGCCGCCACGGTTAATG
GATCCTCCAAGGTGAGCGCCACCCAATCCAATTCCGGCACTTCCAGAGTT
CCCGCCGAGATTGCCACCAAGGCTTAGACCATTTCCTCCCAGACTGATAC
TTCCCTGGCGATATCCTCCTTGGCTGGCAGATCCGCTCGATCCCAAGGAG
GCAGTGCTACCACCGAGAGAGAGACTTCCCGAACCCACAGCAGGGGTCAG
TATACCACTGGCGACTCCATGGGCCAGAGACGCAGCCTCGTGGGCACCGG
CTAGTCCAATCGATCCAGCTGTGTTAGAGTTGTGTCCGTTTGCTCCTATT
GACAGGCCATTTGTTCCAAGTGAAGCAGATCCTGAATTTCCAGAGGTTCC
GATACTCAAATGTCCGGCGTTGATCTTGGATGATCCGGCGCCAGAGCCAG
TAGATCCAGAGATTCCAACTGATCCGATGCTCAAGTGACCAGATGATCCA
GTGCCAGAGGATCCCTTAGAAGCGGAATCAGTTGATCCAATGCTCAGATG
TCCGACACCAATAGATGCAGCTTGAGAGGAACCGGTACTTCCAGCAGATT
GGATATTTAGATGACCAGCTTCGATGGAGGCAGAACCTGATCCGGTGTGC
AGGGAACTAGATCCCGATGACTCAACTTTCTTGTGCTCTGTCTTGATGTG
GGCAGATCCAGTGTGTGATCCAGAGGCTCCAGAACCAGCAGATCCTGAGA
TTCCAGCTGATCCGATGCTCAAGTGGCCAGATGAACCGAGGGCAGAGGAT
CCCTTAGAGGCGGAATCAGTTGCTCCAATGTTCAGGTGTCCTACACCAAT
AGATGCGTGGTTTGAAGCAGCTTCGGAGGATCCGGTAGTTCCGGCAGATT
GG
BS07948.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-PB | 2661 | CG7300-RB | 1776..2661 | 902..17 | 4430 | 100 | Minus |
| CG7300-PA | 1113 | CG7300-RA | 228..1113 | 902..17 | 4430 | 100 | Minus |
| CG7300-PB | 2661 | CG7300-RB | 1647..1718 | 731..660 | 210 | 91.6 | Minus |
| CG7300-PA | 1113 | CG7300-RA | 99..170 | 731..660 | 210 | 91.6 | Minus |
| CG7300-PB | 2661 | CG7300-RB | 1727..1802 | 651..576 | 155 | 88.1 | Minus |
| CG7300-PA | 1113 | CG7300-RA | 179..254 | 651..576 | 155 | 88.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 3044 | CG7300-RD | 1795..2680 | 902..17 | 4430 | 100 | Minus |
| CG7300-RB | 2835 | CG7300-RB | 1795..2680 | 902..17 | 4430 | 100 | Minus |
| CG7300-RD | 3044 | CG7300-RD | 1666..1972 | 731..437 | 790 | 84.4 | Minus |
| CG7300-RB | 2835 | CG7300-RB | 1666..1972 | 731..437 | 790 | 84.4 | Minus |
| CG7300-RD | 3044 | CG7300-RD | 2129..2260 | 856..725 | 420 | 88.7 | Minus |
| CG7300-RB | 2835 | CG7300-RB | 2129..2260 | 856..725 | 420 | 88.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10695364..10696249 | 17..902 | 4430 | 100 | Plus |
| 2L | 23513712 | 2L | 10696072..10696378 | 437..731 | 765 | 84 | Plus |
| 2L | 23513712 | 2L | 10695784..10695915 | 725..856 | 420 | 87.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 00:56:34 has no hits.
BS07948.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:48 Download gff for
BS07948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PB | 1776..2661 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:28 Download gff for
BS07948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PA | 228..1113 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:49:53 Download gff for
BS07948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1776..2664 | 10..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:12 Download gff for
BS07948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1795..2683 | 10..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:12 Download gff for
BS07948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10695360..10696249 | 10..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:49:53 Download gff for
BS07948.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10695360..10696249 | 10..902 | 99 | | Plus |
BS07948.5prime Sequence
848 bp (797 high quality bases) assembled on 2006-01-06
> BS07948.5prime
GAAGTTATCAGTCGACATGGTCTCTTCTGGGCATTCATCCACTTATTCCT
CAAAAACCGAATCATCCAAATTCAGTGCTGGTCAATCCCACATTAGTTCT
GGATCCGCAACCATTGGAGCCTCTGGAACGCACGCTGCATCTGCCCACAT
CAAGACAGAAAACAAGAAAGTTGAGTCATCGGGATCAAGCTCTATGCACG
CCGGATCAGGTTCTGCTTCCATCGGTGCTGGTCATCTGAATGTCCAATCT
GCCGGAACTACCGGATCCTCCGAAGCTGCTTCAAACCACGCATCTATTGG
TGTAGGACACCTGAACATTGGAGCAACTGATTCCGCCTCTAAGGGATCCT
CTGCCCTCGGTTCATCTGGCCACTTGAGCATCGGATCAGCTGGAATCTCA
GGATCTGCTGGTTCTGGAGCCTCTGGATCACACACTGGATCTGCCCACAT
CAAGACAGAGCACAAGAAAGTTGAGTCATCGGGATCTAGTTCCCTGCACA
CCGGATCAGGTTCTGCCTCCATCGAAGCTGGTCATCTAAATATCCAATCT
GCTGGAAGTACCGGTTCCTCTCAAGCTGCATCTATTGGTGTCGGACATCT
GAGCATTGGATCAACTGATTCCGCTTCTAAGGGATCCTCTGGCACTGGAT
CATCTGGTCACTTGAGCATCGGATCAGTTGGAATCTCTGGATCTACTGGC
TCTGGCGCCGGATCATCCAAGATCAACGCCGGACATTTGAGTATCGGAAC
CTCTGGAAATTCANGATCTGCTTCACTTGGAACAAATGGCCTGTCAATAG
GAGCAAACGGACACAACTCTAACACAGCTGGATCGATTGGACTAACCG
BS07948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-PB | 2661 | CG7300-RB | 1549..2376 | 17..844 | 4121 | 99.8 | Plus |
| CG7300-PA | 1113 | CG7300-RA | 1..828 | 17..844 | 4121 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 3044 | CG7300-RD | 1568..2399 | 17..848 | 4134 | 99.8 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1568..2399 | 17..848 | 4134 | 99.8 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1666..1972 | 415..709 | 790 | 84.4 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1966..2260 | 115..421 | 790 | 84.4 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1666..1972 | 415..709 | 790 | 84.4 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1966..2260 | 115..421 | 790 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10695645..10696476 | 848..17 | 4134 | 99.8 | Minus |
| 2L | 23513712 | 2L | 10695784..10696078 | 421..115 | 765 | 84 | Minus |
| 2L | 23513712 | 2L | 10696072..10696378 | 709..415 | 765 | 84 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:39:39 has no hits.
BS07948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:49 Download gff for
BS07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PB | 1541..2380 | 10..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:29 Download gff for
BS07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:34 Download gff for
BS07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1541..2380 | 10..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:17:22 Download gff for
BS07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1560..2399 | 10..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:17:22 Download gff for
BS07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10695645..10696484 | 10..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:34 Download gff for
BS07948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10695645..10696484 | 10..848 | 99 | | Minus |
BS07948.complete Sequence
1145 bp (1145 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636039
> BS07948.complete
GAAGTTATCAGTCGACATGGTCTCTTCTGGGCATTCATCCACTTATTCCT
CAAAAACCGAATCATCCAAATTCAGTGCTGGTCAATCCCACATTAGTTCT
GGATCCGCAACCATTGGAGCCTCTGGAACGCACGCTGCATCTGCCCACAT
CAAGACAGAAAACAAGAAAGTTGAGTCATCGGGATCAAGCTCTATGCACG
CCGGATCAGGTTCTGCTTCCATCGGTGCTGGTCATCTGAATGTCCAATCT
GCCGGAACTACCGGATCCTCCGAAGCTGCTTCAAACCACGCATCTATTGG
TGTAGGACACCTGAACATTGGAGCAACTGATTCCGCCTCTAAGGGATCCT
CTGCCCTCGGTTCATCTGGCCACTTGAGCATCGGATCAGCTGGAATCTCA
GGATCTGCTGGTTCTGGAGCCTCTGGATCACACACTGGATCTGCCCACAT
CAAGACAGAGCACAAGAAAGTTGAGTCATCGGGATCTAGTTCCCTGCACA
CCGGATCAGGTTCTGCCTCCATCGAAGCTGGTCATCTAAATATCCAATCT
GCTGGAAGTACCGGTTCCTCTCAAGCTGCATCTATTGGTGTCGGACATCT
GAGCATTGGATCAACTGATTCCGCTTCTAAGGGATCCTCTGGCACTGGAT
CATCTGGTCACTTGAGCATCGGATCAGTTGGAATCTCTGGATCTACTGGC
TCTGGCGCCGGATCATCCAAGATCAACGCCGGACATTTGAGTATCGGAAC
CTCTGGAAATTCAGGATCTGCTTCACTTGGAACAAATGGCCTGTCAATAG
GAGCAAACGGACACAACTCTAACACAGCTGGATCGATTGGACTAGCCGGT
GCCCACGAGGCTGCGTCTCTGGCCCATGGAGTCGCCAGTGGTATACTGAC
CCCTGCTGTGGGTTCGGGAAGTCTCTCTCTCGGTGGTAGCACTGCCTCCT
TGGGATCGAGCGGATCTGCCAGCCAAGGAGGATATCGCCAGGGAAGTATC
AGTCTGGGAGGAAATGGTCTAAGCCTTGGTGGCAATCTCGGCGGGAACTC
TGGAAGTGCCGGAATTGGATTGGGTGGCGCTCACCTTGGAGGATCCATTA
ACCGTGGCGGCGGCCTTTTCCTTGGCTAAAAGCTTTCTAGACCAT
BS07948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 2661 | CG7300-PD | 1549..2661 | 17..1129 | 5565 | 100 | Plus |
| CG7300-RB | 2661 | CG7300-PB | 1549..2661 | 17..1129 | 5565 | 100 | Plus |
| CG7300-RD | 2661 | CG7300-PD | 1647..1953 | 415..709 | 765 | 84 | Plus |
| CG7300-RD | 2661 | CG7300-PD | 1947..2241 | 115..421 | 765 | 84 | Plus |
| CG7300-RB | 2661 | CG7300-PB | 1647..1953 | 415..709 | 765 | 84 | Plus |
| CG7300-RB | 2661 | CG7300-PB | 1947..2241 | 115..421 | 765 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 3044 | CG7300-RD | 1568..2680 | 17..1129 | 5565 | 100 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1568..2680 | 17..1129 | 5565 | 100 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1966..2260 | 115..421 | 765 | 84 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1666..1972 | 415..709 | 765 | 84 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1666..1972 | 415..709 | 765 | 84 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1966..2260 | 115..421 | 765 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10695364..10696476 | 1129..17 | 5565 | 100 | Minus |
| 2L | 23513712 | 2L | 10695784..10696078 | 421..115 | 765 | 84 | Minus |
| 2L | 23513712 | 2L | 10696072..10696378 | 709..415 | 765 | 84 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:07 has no hits.
BS07948.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:16 Download gff for
BS07948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RA | 1..1113 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:37 Download gff for
BS07948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RA | 766..1889 | 10..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:12 Download gff for
BS07948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1549..2659 | 17..1127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:16 Download gff for
BS07948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RA | 766..1889 | 10..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:08 Download gff for
BS07948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1568..2678 | 17..1127 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:08 Download gff for
BS07948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10695366..10696476 | 17..1127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:12 Download gff for
BS07948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10695366..10696476 | 17..1127 | 100 | | Minus |
BS07948.pep Sequence
Translation from 16 to 1128
> BS07948.pep
MVSSGHSSTYSSKTESSKFSAGQSHISSGSATIGASGTHAASAHIKTENK
KVESSGSSSMHAGSGSASIGAGHLNVQSAGTTGSSEAASNHASIGVGHLN
IGATDSASKGSSALGSSGHLSIGSAGISGSAGSGASGSHTGSAHIKTEHK
KVESSGSSSLHTGSGSASIEAGHLNIQSAGSTGSSQAASIGVGHLSIGST
DSASKGSSGTGSSGHLSIGSVGISGSTGSGAGSSKINAGHLSIGTSGNSG
SASLGTNGLSIGANGHNSNTAGSIGLAGAHEAASLAHGVASGILTPAVGS
GSLSLGGSTASLGSSGSASQGGYRQGSISLGGNGLSLGGNLGGNSGSAGI
GLGGAHLGGSINRGGGLFLG*
BS07948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-PD | 886 | CG7300-PD | 517..886 | 1..370 | 1828 | 100 | Plus |
| CG7300-PB | 886 | CG7300-PB | 517..886 | 1..370 | 1828 | 100 | Plus |
| CG7300-PD | 886 | CG7300-PD | 248..659 | 1..360 | 321 | 28.5 | Plus |
| CG7300-PB | 886 | CG7300-PB | 248..659 | 1..360 | 321 | 28.5 | Plus |
| CG7300-PD | 886 | CG7300-PD | 164..492 | 21..349 | 294 | 30.2 | Plus |
| CG7300-PB | 886 | CG7300-PB | 164..492 | 21..349 | 294 | 30.2 | Plus |
| CG7300-PD | 886 | CG7300-PD | 54..470 | 15..364 | 266 | 28.8 | Plus |
| CG7300-PB | 886 | CG7300-PB | 54..470 | 15..364 | 266 | 28.8 | Plus |
| sbb-PE | 929 | CG5580-PE | 383..756 | 4..351 | 252 | 28.2 | Plus |
| sbb-PC | 929 | CG5580-PC | 383..756 | 4..351 | 252 | 28.2 | Plus |
| sbb-PF | 939 | CG5580-PF | 393..766 | 4..351 | 252 | 28.2 | Plus |
| sbb-PE | 929 | CG5580-PE | 251..596 | 1..363 | 247 | 29.4 | Plus |
| sbb-PC | 929 | CG5580-PC | 251..596 | 1..363 | 247 | 29.4 | Plus |
| sbb-PE | 929 | CG5580-PE | 173..581 | 11..360 | 242 | 25.2 | Plus |
| sbb-PC | 929 | CG5580-PC | 173..581 | 11..360 | 242 | 25.2 | Plus |
| CG7300-PD | 886 | CG7300-PD | 38..343 | 63..360 | 226 | 27.8 | Plus |
| CG7300-PB | 886 | CG7300-PB | 38..343 | 63..360 | 226 | 27.8 | Plus |
| sbb-PE | 929 | CG5580-PE | 152..446 | 30..354 | 225 | 28 | Plus |
| sbb-PC | 929 | CG5580-PC | 152..446 | 30..354 | 225 | 28 | Plus |
| CG7300-PD | 886 | CG7300-PD | 29..278 | 92..360 | 185 | 27.6 | Plus |
| CG7300-PB | 886 | CG7300-PB | 29..278 | 92..360 | 185 | 27.6 | Plus |
| sbb-PE | 929 | CG5580-PE | 525..817 | 3..295 | 164 | 26.8 | Plus |
| sbb-PC | 929 | CG5580-PC | 525..817 | 3..295 | 164 | 26.8 | Plus |
