Clone Sequence Records
BS07952.3prime Sequence
864 bp (794 high quality bases) assembled on 2006-01-06
> BS07952.3prime
ATGGTCTAGAAAGCTTTTAGTTCCTTTGAACAAGTTTAATCCAAAAGCCG
CCTTTGGGTGACAACTGAAAACCGGAAGTAATGAGCTCTAGTGGAATGCA
GGATTTCTTGGCAGGGGCAAAGCGGTAGTCCTTCAAAAGATAGTAGATAA
CAGCCTTTGCTTCAAGTAGAGCGAATCGGGAACCAATGCAGTTGCGTTGA
CCCAGGCCAAAGGGGAAGTATGTGAATGGCTGAATAGACTCCTTGTTCTC
ATCGCTAAAACGTTCCGGATCGAACTTCATAGGGTTCTCAAAGTACTTGG
GATCACGATGGAAGCCGCATGTAGGCAGCCAGATGACATCGCCCTTCTTG
ACCTCGACTTTCTGGCCATCCACATCGAAGGTGATATCCTTGTTGCATTC
TCGATCGACGGCAATTGCCGCCGGCCACTTTCGCAGAACCTCGTTGACGA
CCTGATCCAGATACTTCATGCCCATAATTGCCTCATAGGTCAGTTCTTTG
CCCTCCAGGTCTTGGTCCACTTGCTGTACCTCCTCGTATAGCCTCTGCTG
CACATCCTGGTTCTCCATTAGCTCGTGAGCGGTGAAGCACATCAGCACCG
CCGAAGTCTCGAAGCCAGCAAAGAAGAACACGAAACACTGGGCGACAATG
TCGCGATCGCTCCACTCGCGAACGGCAGATGCCTTGGTCTTCTCCGTCTG
GATGATACCACGAGCCTCCATCAGCATGTTTATCATGTCGGGACGTACAA
TATTGTGCTCCTGTCGGTATTTCATAGCATCGAGCACCAGACGCACGAAA
TACTGAGTGCTTTTCCTATCGAAAAGCTCGACCTTAAGGATCTTATTAAG
ACCCTTCAATGCGA
BS07952.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11466-PA | 1551 | Cyp9f2-RA | 704..1551 | 864..17 | 4240 | 100 | Minus |
CG11466-PB | 1308 | Cyp9f2-RB | 461..1308 | 864..17 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1758 | CG11466-RA | 824..1671 | 864..17 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12403649..12404310 | 182..843 | 3310 | 100 | Plus |
3R | 32079331 | 3R | 12396914..12397268 | 490..844 | 1745 | 99.4 | Plus |
3R | 32079331 | 3R | 12403427..12403594 | 17..184 | 840 | 100 | Plus |
3R | 32079331 | 3R | 12396690..12396836 | 17..163 | 705 | 98.6 | Plus |
3R | 32079331 | 3R | 12396835..12396916 | 387..468 | 350 | 95.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:29:10 has no hits.
BS07952.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:56 Download gff for
BS07952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PB | 462..1308 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:39 Download gff for
BS07952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PB | 462..1308 | 17..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:50:31 Download gff for
BS07952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 825..1675 | 11..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:41:48 Download gff for
BS07952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 825..1675 | 11..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:41:48 Download gff for
BS07952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12403423..12403593 | 11..183 | 98 | <- | Plus |
3R | 12403651..12404308 | 184..841 | 100 | <- | Plus |
3R | 12404370..12404391 | 842..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:50:31 Download gff for
BS07952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8230092..8230113 | 842..863 | 100 | | Plus |
arm_3R | 8229145..8229315 | 11..183 | 98 | <- | Plus |
arm_3R | 8229373..8230030 | 184..841 | 100 | <- | Plus |
BS07952.5prime Sequence
891 bp (827 high quality bases) assembled on 2006-01-06
> BS07952.5prime
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGA
BS07952.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11466-PA | 1551 | Cyp9f2-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
CG11466-PB | 1308 | Cyp9f2-RB | 1..632 | 260..891 | 3160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1758 | CG11466-RA | 115..995 | 11..891 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12404370..12404889 | 742..223 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 12397334..12397853 | 742..223 | 2390 | 97.3 | Minus |
3R | 32079331 | 3R | 12405703..12405914 | 222..11 | 1045 | 99.5 | Minus |
3R | 32079331 | 3R | 12398675..12398877 | 217..15 | 880 | 95.6 | Minus |
3R | 32079331 | 3R | 12404160..12404310 | 891..741 | 755 | 100 | Minus |
3R | 32079331 | 3R | 12397117..12397268 | 891..740 | 745 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:00:54 has no hits.
BS07952.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:57 Download gff for
BS07952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:41 Download gff for
BS07952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:47 Download gff for
BS07952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 111..994 | 6..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:33 Download gff for
BS07952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 111..994 | 6..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:33 Download gff for
BS07952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12404161..12404308 | 743..890 | 100 | <- | Minus |
3R | 12404370..12404889 | 223..742 | 100 | <- | Minus |
3R | 12405703..12405918 | 6..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:47 Download gff for
BS07952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8229883..8230030 | 743..890 | 100 | <- | Minus |
arm_3R | 8230092..8230611 | 223..742 | 100 | <- | Minus |
arm_3R | 8231425..8231640 | 6..222 | 98 | | Minus |
BS07952.complete Sequence
1583 bp (1583 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636040
> BS07952.complete
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAA
GGCATCTGCCGTTCGCGAGTGGAGCGATCGCGACATTGTCGCCCAGTGTT
TCGTGTTCTTCTTTGCTGGCTTCGAGACTTCGGCGGTGCTGATGTGCTTC
ACCGCTCACGAGCTAATGGAGAACCAGGATGTGCAGCAGAGGCTATACGA
GGAGGTACAGCAAGTGGACCAAGACCTGGAGGGCAAAGAACTGACCTATG
AGGCAATTATGGGCATGAAGTATCTGGATCAGGTCGTCAACGAGGTTCTG
CGAAAGTGGCCGGCGGCAATTGCCGTCGATCGAGAATGCAACAAGGATAT
CACCTTCGATGTGGATGGCCAGAAAGTCGAGGTCAAGAAGGGCGATGTCA
TCTGGCTGCCTACATGCGGCTTCCATCGTGATCCCAAGTACTTTGAGAAC
CCTATGAAGTTCGATCCGGAACGTTTTAGCGATGAGAACAAGGAGTCTAT
TCAGCCATTCACATACTTCCCCTTTGGCCTGGGTCAACGCAACTGCATTG
GTTCCCGATTCGCTCTACTTGAAGCAAAGGCTGTTATCTACTATCTTTTG
AAGGACTACCGCTTTGCCCCTGCCAAGAAATCCTGCATTCCACTAGAGCT
CATTACTTCCGGTTTTCAGTTGTCACCCAAAGGCGGCTTTTGGATTAAAC
TTGTTCAAAGGAACTAAAAGCTTTCTAGACCAT
BS07952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1551 | CG11466-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1758 | CG11466-RA | 115..1671 | 11..1567 | 7770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12403649..12404310 | 1402..741 | 3310 | 100 | Minus |
3R | 32079331 | 3R | 12404370..12404889 | 742..223 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 12397334..12397853 | 742..223 | 2390 | 97.3 | Minus |
3R | 32079331 | 3R | 12396914..12397268 | 1094..740 | 1745 | 99.4 | Minus |
3R | 32079331 | 3R | 12405703..12405914 | 222..11 | 1045 | 99.5 | Minus |
3R | 32079331 | 3R | 12398675..12398877 | 217..15 | 880 | 95.6 | Minus |
3R | 32079331 | 3R | 12403427..12403594 | 1567..1400 | 840 | 100 | Minus |
3R | 32079331 | 3R | 12396690..12396836 | 1567..1421 | 705 | 98.6 | Minus |
3R | 32079331 | 3R | 12396835..12396916 | 1197..1116 | 350 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:18:49 has no hits.
BS07952.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:03 Download gff for
BS07952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 1..1551 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:22 Download gff for
BS07952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 170..1734 | 6..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:04 Download gff for
BS07952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 126..1669 | 22..1565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:04 Download gff for
BS07952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 170..1734 | 6..1573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:34 Download gff for
BS07952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 126..1669 | 22..1565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:34 Download gff for
BS07952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12403429..12403593 | 1401..1565 | 100 | <- | Minus |
3R | 12403651..12404308 | 743..1400 | 100 | <- | Minus |
3R | 12404370..12404889 | 223..742 | 100 | <- | Minus |
3R | 12405703..12405903 | 22..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:04 Download gff for
BS07952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8229151..8229315 | 1401..1565 | 100 | <- | Minus |
arm_3R | 8229373..8230030 | 743..1400 | 100 | <- | Minus |
arm_3R | 8230092..8230611 | 223..742 | 100 | <- | Minus |
arm_3R | 8231425..8231625 | 22..222 | 100 | | Minus |
BS07952.pep Sequence
Translation from 16 to 1566
> BS07952.pep
MLWEFFALFAIAAALFYRWASANNDFFKDRGIAYEKPVLYFGNMAGMFLR
KRAMFDIVCDLYTKGGSKKFFGIFEQRQPLLMVRDPDLIKQITIKDFDHF
INHRNVFATSSDDDPHDMSNLFGSSLFSMRDARWKDMRSTLSPAFTGSKM
RQMFQLMNQVAKEAVDCLKQDDSRVQENELDMKDYCTRFTNDVIASTAFG
LQVNSFKDRENTFYQMGKKLTTFTFLQSMKFMLFFALKGLNKILKVELFD
RKSTQYFVRLVLDAMKYRQEHNIVRPDMINMLMEARGIIQTEKTKASAVR
EWSDRDIVAQCFVFFFAGFETSAVLMCFTAHELMENQDVQQRLYEEVQQV
DQDLEGKELTYEAIMGMKYLDQVVNEVLRKWPAAIAVDRECNKDITFDVD
GQKVEVKKGDVIWLPTCGFHRDPKYFENPMKFDPERFSDENKESIQPFTY
FPFGLGQRNCIGSRFALLEAKAVIYYLLKDYRFAPAKKSCIPLELITSGF
QLSPKGGFWIKLVQRN*
BS07952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-PA | 516 | CG11466-PA | 1..516 | 1..516 | 2714 | 100 | Plus |
Cyp9b2-PA | 505 | CG4486-PA | 3..504 | 2..515 | 1120 | 43.5 | Plus |
Cyp9b1-PA | 505 | CG4485-PA | 5..504 | 4..515 | 1100 | 42.6 | Plus |
Cyp9h1-PA | 518 | CG17577-PA | 9..517 | 7..515 | 1090 | 43.2 | Plus |
Cyp9c1-PA | 522 | CG3616-PA | 5..519 | 4..515 | 1063 | 42.4 | Plus |