Clone BS07952 Report

Search the DGRC for BS07952

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCyp9f2-RA
Protein status:BS07952.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07952.3prime Sequence

864 bp (794 high quality bases) assembled on 2006-01-06

> BS07952.3prime
ATGGTCTAGAAAGCTTTTAGTTCCTTTGAACAAGTTTAATCCAAAAGCCG
CCTTTGGGTGACAACTGAAAACCGGAAGTAATGAGCTCTAGTGGAATGCA
GGATTTCTTGGCAGGGGCAAAGCGGTAGTCCTTCAAAAGATAGTAGATAA
CAGCCTTTGCTTCAAGTAGAGCGAATCGGGAACCAATGCAGTTGCGTTGA
CCCAGGCCAAAGGGGAAGTATGTGAATGGCTGAATAGACTCCTTGTTCTC
ATCGCTAAAACGTTCCGGATCGAACTTCATAGGGTTCTCAAAGTACTTGG
GATCACGATGGAAGCCGCATGTAGGCAGCCAGATGACATCGCCCTTCTTG
ACCTCGACTTTCTGGCCATCCACATCGAAGGTGATATCCTTGTTGCATTC
TCGATCGACGGCAATTGCCGCCGGCCACTTTCGCAGAACCTCGTTGACGA
CCTGATCCAGATACTTCATGCCCATAATTGCCTCATAGGTCAGTTCTTTG
CCCTCCAGGTCTTGGTCCACTTGCTGTACCTCCTCGTATAGCCTCTGCTG
CACATCCTGGTTCTCCATTAGCTCGTGAGCGGTGAAGCACATCAGCACCG
CCGAAGTCTCGAAGCCAGCAAAGAAGAACACGAAACACTGGGCGACAATG
TCGCGATCGCTCCACTCGCGAACGGCAGATGCCTTGGTCTTCTCCGTCTG
GATGATACCACGAGCCTCCATCAGCATGTTTATCATGTCGGGACGTACAA
TATTGTGCTCCTGTCGGTATTTCATAGCATCGAGCACCAGACGCACGAAA
TACTGAGTGCTTTTCCTATCGAAAAGCTCGACCTTAAGGATCTTATTAAG
ACCCTTCAATGCGA

BS07952.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11466-PA 1551 Cyp9f2-RA 704..1551 864..17 4240 100 Minus
CG11466-PB 1308 Cyp9f2-RB 461..1308 864..17 4240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1758 CG11466-RA 824..1671 864..17 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12403649..12404310 182..843 3310 100 Plus
3R 32079331 3R 12396914..12397268 490..844 1745 99.4 Plus
3R 32079331 3R 12403427..12403594 17..184 840 100 Plus
3R 32079331 3R 12396690..12396836 17..163 705 98.6 Plus
3R 32079331 3R 12396835..12396916 387..468 350 95.1 Plus
Blast to na_te.dros performed on 2015-02-03 12:29:10 has no hits.

BS07952.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:56 Download gff for BS07952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PB 462..1308 17..863 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:39 Download gff for BS07952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PB 462..1308 17..863 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:50:31 Download gff for BS07952.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 825..1675 11..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:41:48 Download gff for BS07952.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 825..1675 11..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:41:48 Download gff for BS07952.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12403423..12403593 11..183 98 <- Plus
3R 12403651..12404308 184..841 100 <- Plus
3R 12404370..12404391 842..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:50:31 Download gff for BS07952.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8230092..8230113 842..863 100   Plus
arm_3R 8229145..8229315 11..183 98 <- Plus
arm_3R 8229373..8230030 184..841 100 <- Plus

BS07952.5prime Sequence

891 bp (827 high quality bases) assembled on 2006-01-06

> BS07952.5prime
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGA

BS07952.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11466-PA 1551 Cyp9f2-RA 1..875 17..891 4375 100 Plus
CG11466-PB 1308 Cyp9f2-RB 1..632 260..891 3160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1758 CG11466-RA 115..995 11..891 4390 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12404370..12404889 742..223 2600 100 Minus
3R 32079331 3R 12397334..12397853 742..223 2390 97.3 Minus
3R 32079331 3R 12405703..12405914 222..11 1045 99.5 Minus
3R 32079331 3R 12398675..12398877 217..15 880 95.6 Minus
3R 32079331 3R 12404160..12404310 891..741 755 100 Minus
3R 32079331 3R 12397117..12397268 891..740 745 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 05:00:54 has no hits.

BS07952.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:28:57 Download gff for BS07952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:41 Download gff for BS07952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:47 Download gff for BS07952.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 111..994 6..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:33 Download gff for BS07952.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 111..994 6..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:33 Download gff for BS07952.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12404161..12404308 743..890 100 <- Minus
3R 12404370..12404889 223..742 100 <- Minus
3R 12405703..12405918 6..222 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:47 Download gff for BS07952.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8229883..8230030 743..890 100 <- Minus
arm_3R 8230092..8230611 223..742 100 <- Minus
arm_3R 8231425..8231640 6..222 98   Minus

BS07952.complete Sequence

1583 bp (1583 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636040

> BS07952.complete
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAA
GGCATCTGCCGTTCGCGAGTGGAGCGATCGCGACATTGTCGCCCAGTGTT
TCGTGTTCTTCTTTGCTGGCTTCGAGACTTCGGCGGTGCTGATGTGCTTC
ACCGCTCACGAGCTAATGGAGAACCAGGATGTGCAGCAGAGGCTATACGA
GGAGGTACAGCAAGTGGACCAAGACCTGGAGGGCAAAGAACTGACCTATG
AGGCAATTATGGGCATGAAGTATCTGGATCAGGTCGTCAACGAGGTTCTG
CGAAAGTGGCCGGCGGCAATTGCCGTCGATCGAGAATGCAACAAGGATAT
CACCTTCGATGTGGATGGCCAGAAAGTCGAGGTCAAGAAGGGCGATGTCA
TCTGGCTGCCTACATGCGGCTTCCATCGTGATCCCAAGTACTTTGAGAAC
CCTATGAAGTTCGATCCGGAACGTTTTAGCGATGAGAACAAGGAGTCTAT
TCAGCCATTCACATACTTCCCCTTTGGCCTGGGTCAACGCAACTGCATTG
GTTCCCGATTCGCTCTACTTGAAGCAAAGGCTGTTATCTACTATCTTTTG
AAGGACTACCGCTTTGCCCCTGCCAAGAAATCCTGCATTCCACTAGAGCT
CATTACTTCCGGTTTTCAGTTGTCACCCAAAGGCGGCTTTTGGATTAAAC
TTGTTCAAAGGAACTAAAAGCTTTCTAGACCAT

BS07952.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1551 CG11466-PA 1..1551 17..1567 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1758 CG11466-RA 115..1671 11..1567 7770 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12403649..12404310 1402..741 3310 100 Minus
3R 32079331 3R 12404370..12404889 742..223 2600 100 Minus
3R 32079331 3R 12397334..12397853 742..223 2390 97.3 Minus
3R 32079331 3R 12396914..12397268 1094..740 1745 99.4 Minus
3R 32079331 3R 12405703..12405914 222..11 1045 99.5 Minus
3R 32079331 3R 12398675..12398877 217..15 880 95.6 Minus
3R 32079331 3R 12403427..12403594 1567..1400 840 100 Minus
3R 32079331 3R 12396690..12396836 1567..1421 705 98.6 Minus
3R 32079331 3R 12396835..12396916 1197..1116 350 95.1 Minus
Blast to na_te.dros performed on 2014-11-27 10:18:49 has no hits.

BS07952.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:03 Download gff for BS07952.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 1..1551 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:22 Download gff for BS07952.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 170..1734 6..1573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:04 Download gff for BS07952.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 126..1669 22..1565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:04 Download gff for BS07952.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 170..1734 6..1573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:34 Download gff for BS07952.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 126..1669 22..1565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:34 Download gff for BS07952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12403429..12403593 1401..1565 100 <- Minus
3R 12403651..12404308 743..1400 100 <- Minus
3R 12404370..12404889 223..742 100 <- Minus
3R 12405703..12405903 22..222 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:04 Download gff for BS07952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8229151..8229315 1401..1565 100 <- Minus
arm_3R 8229373..8230030 743..1400 100 <- Minus
arm_3R 8230092..8230611 223..742 100 <- Minus
arm_3R 8231425..8231625 22..222 100   Minus

BS07952.pep Sequence

Translation from 16 to 1566

> BS07952.pep
MLWEFFALFAIAAALFYRWASANNDFFKDRGIAYEKPVLYFGNMAGMFLR
KRAMFDIVCDLYTKGGSKKFFGIFEQRQPLLMVRDPDLIKQITIKDFDHF
INHRNVFATSSDDDPHDMSNLFGSSLFSMRDARWKDMRSTLSPAFTGSKM
RQMFQLMNQVAKEAVDCLKQDDSRVQENELDMKDYCTRFTNDVIASTAFG
LQVNSFKDRENTFYQMGKKLTTFTFLQSMKFMLFFALKGLNKILKVELFD
RKSTQYFVRLVLDAMKYRQEHNIVRPDMINMLMEARGIIQTEKTKASAVR
EWSDRDIVAQCFVFFFAGFETSAVLMCFTAHELMENQDVQQRLYEEVQQV
DQDLEGKELTYEAIMGMKYLDQVVNEVLRKWPAAIAVDRECNKDITFDVD
GQKVEVKKGDVIWLPTCGFHRDPKYFENPMKFDPERFSDENKESIQPFTY
FPFGLGQRNCIGSRFALLEAKAVIYYLLKDYRFAPAKKSCIPLELITSGF
QLSPKGGFWIKLVQRN*

BS07952.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-PA 516 CG11466-PA 1..516 1..516 2714 100 Plus
Cyp9b2-PA 505 CG4486-PA 3..504 2..515 1120 43.5 Plus
Cyp9b1-PA 505 CG4485-PA 5..504 4..515 1100 42.6 Plus
Cyp9h1-PA 518 CG17577-PA 9..517 7..515 1090 43.2 Plus
Cyp9c1-PA 522 CG3616-PA 5..519 4..515 1063 42.4 Plus