Clone BS07956 Report

Search the DGRC for BS07956

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG4641-RA
Protein status:BS07956.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07956.3prime Sequence

856 bp (855 high quality bases) assembled on 2006-01-06

> BS07956.3prime
ATGGTCTAGAAAGCTTCTAAGCGTTCGACTCCTTCAGATTTTGCAAACGT
GCCAATTGATTTGAGTCCAATTCCTCGGGTATGCTAGCTCGCCCACCGAC
CACCTGTTTGGGTGCCTCAATATCCTCATCGCCAGCCGCAGATCCAGATA
CTATTGCTTCTCCTGCTGCCTCTCCGTTGATGTCCAATTCGTTGGACTGC
TCCCCACCGCCACCTCCACCGCCCCCACCTCCTCCGATTCCAGCGAAGGC
GTCATCAAAATTGGCATCGAAGTTGGCCTCAAAATTGGCCTCAAATCCCG
AACCGTCGCCGGACTCTCCCTTGGCCTTCTCGTTGAATGGATCCTCCGCA
TCCTGCAGTACCGGCACATCGGCAACCGAAGCCGAATCGGTGCCCTCCGA
GAAGGACTGTTGGTCCTCTGCATCACAGGATGGATACTCGGTCAGTGTAA
TGCTCACCACGGGCCTCACTCCAGCATTACCTTCTTTGGCCGGCGCGCTC
TGTGGCGCCACCTTGGCCAGCGGCTTGGGCGCAATATCTGGCTTTTTGGC
CACTTCCGCCGGCTGCTCCTTGGACACCGGCTCCACTGGCTGTGCATCGC
TCTCGCCTACTGGTGGGAAAGATTTATCGGCACCGTCTTCAACCATGGGG
GTTGCAGCGGTAACAATTATTTGTGCCATACCTAAGTTCAGCGTGTTGGC
GCCACCTGCCGCCGCCCCCTTTTCGACCTTGCTCCCAGATCCAGGAGCGG
ATCCGCCCGCCTTCGCTAGTTGGGGCGGCGGCAAGGACGGCGGCGGCTGC
CCATCGTCACTGAGATCGTCCTCCATGCCAGGCTCTTGGATGAGTACTGA
GTATGC

BS07956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4641-PA 885 CG4641-RA 46..885 856..17 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RF 5420 CG43479-RF 3218..4058 856..16 4205 100 Minus
nwk-RG 4695 CG43479-RG 2500..3333 849..16 4170 100 Minus
nwk-RK 4713 CG43479-RK 2518..3351 849..16 4170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9143525..9144331 822..16 4035 100 Minus
3L 28110227 3L 9143288..9143324 856..820 185 100 Minus
Blast to na_te.dros performed on 2015-02-09 00:58:48 has no hits.

BS07956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:05 Download gff for BS07956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 46..885 17..856 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:51 Download gff for BS07956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 46..885 17..856 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:16 Download gff for BS07956.3prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3218..4058 16..856 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:28 Download gff for BS07956.3prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3218..4058 16..856 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:28 Download gff for BS07956.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9143288..9143323 821..856 100 -> Minus
3L 9143527..9144331 16..820 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:16 Download gff for BS07956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9136388..9136423 821..856 100 -> Minus
arm_3L 9136627..9137431 16..820 100   Minus

BS07956.5prime Sequence

907 bp (820 high quality bases) assembled on 2006-01-06

> BS07956.5prime
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGAACGCTTA
GAAGCTT

BS07956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4641-PA 885 CG4641-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RF 5420 CG43479-RF 3173..4058 17..902 4430 100 Plus
nwk-RG 4695 CG43479-RG 2500..3333 69..902 4170 100 Plus
nwk-RK 4713 CG43479-RK 2518..3351 69..902 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9143525..9144331 96..902 4035 100 Plus
3L 28110227 3L 9143243..9143324 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:56:21 has no hits.

BS07956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:06 Download gff for BS07956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:52 Download gff for BS07956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:34:32 Download gff for BS07956.5prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4060 17..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:15 Download gff for BS07956.5prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4060 17..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:15 Download gff for BS07956.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9143243..9143323 17..97 100 -> Plus
3L 9143527..9144333 98..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:34:32 Download gff for BS07956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9136343..9136423 17..97 100 -> Plus
arm_3L 9136627..9137433 98..907 99   Plus

BS07956.complete Sequence

917 bp (917 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636041

> BS07956.complete
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGAACGCTTA
GAAGCTTTCTAGACCAT

BS07956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RG 3207 CG43479-PG 2375..3207 69..901 4165 100 Plus
nwk-RK 3150 CG43479-PK 2318..3150 69..901 4165 100 Plus
nwk-RD 3207 CG43479-PD 2375..3207 69..901 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RF 5420 CG43479-RF 3173..4058 17..902 4430 100 Plus
nwk-RG 4695 CG43479-RG 2500..3333 69..902 4170 100 Plus
nwk-RK 4713 CG43479-RK 2518..3351 69..902 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9143525..9144331 96..902 4035 100 Plus
3L 28110227 3L 9143243..9143324 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:33:38 has no hits.

BS07956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:05 Download gff for BS07956.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:24 Download gff for BS07956.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 463..1348 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:54 Download gff for BS07956.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4057 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:05 Download gff for BS07956.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 463..1348 17..902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:52 Download gff for BS07956.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4057 17..901 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:52 Download gff for BS07956.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9143243..9143323 17..97 100 -> Plus
3L 9143527..9144330 98..901 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:54 Download gff for BS07956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9136343..9136423 17..97 100 -> Plus
arm_3L 9136627..9137430 98..901 100   Plus

BS07956.pep Sequence

Translation from 16 to 900

> BS07956.pep
MIDTKPTNLFSFIFNAYSVLIQEPGMEDDLSDDGQPPPSLPPPQLAKAGG
SAPGSGSKVEKGAAAGGANTLNLGMAQIIVTAATPMVEDGADKSFPPVGE
SDAQPVEPVSKEQPAEVAKKPDIAPKPLAKVAPQSAPAKEGNAGVRPVVS
ITLTEYPSCDAEDQQSFSEGTDSASVADVPVLQDAEDPFNEKAKGESGDG
SGFEANFEANFDANFDDAFAGIGGGGGGGGGGGEQSNELDINGEAAGEAI
VSGSAAGDEDIEAPKQVVGGRASIPEELDSNQLARLQNLKESNA*

BS07956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-PK 1049 CG43479-PK 773..1049 18..294 1412 99.6 Plus
nwk-PG 1068 CG43479-PG 793..1068 19..294 1411 100 Plus
nwk-PD 1068 CG43479-PD 793..1068 19..294 1411 100 Plus
nwk-PJ 1056 CG43479-PJ 773..1039 18..284 1364 99.6 Plus
nwk-PI 1075 CG43479-PI 793..1058 19..284 1363 100 Plus