Clone Sequence Records
BS07956.3prime Sequence
856 bp (855 high quality bases) assembled on 2006-01-06
> BS07956.3prime
ATGGTCTAGAAAGCTTCTAAGCGTTCGACTCCTTCAGATTTTGCAAACGT
GCCAATTGATTTGAGTCCAATTCCTCGGGTATGCTAGCTCGCCCACCGAC
CACCTGTTTGGGTGCCTCAATATCCTCATCGCCAGCCGCAGATCCAGATA
CTATTGCTTCTCCTGCTGCCTCTCCGTTGATGTCCAATTCGTTGGACTGC
TCCCCACCGCCACCTCCACCGCCCCCACCTCCTCCGATTCCAGCGAAGGC
GTCATCAAAATTGGCATCGAAGTTGGCCTCAAAATTGGCCTCAAATCCCG
AACCGTCGCCGGACTCTCCCTTGGCCTTCTCGTTGAATGGATCCTCCGCA
TCCTGCAGTACCGGCACATCGGCAACCGAAGCCGAATCGGTGCCCTCCGA
GAAGGACTGTTGGTCCTCTGCATCACAGGATGGATACTCGGTCAGTGTAA
TGCTCACCACGGGCCTCACTCCAGCATTACCTTCTTTGGCCGGCGCGCTC
TGTGGCGCCACCTTGGCCAGCGGCTTGGGCGCAATATCTGGCTTTTTGGC
CACTTCCGCCGGCTGCTCCTTGGACACCGGCTCCACTGGCTGTGCATCGC
TCTCGCCTACTGGTGGGAAAGATTTATCGGCACCGTCTTCAACCATGGGG
GTTGCAGCGGTAACAATTATTTGTGCCATACCTAAGTTCAGCGTGTTGGC
GCCACCTGCCGCCGCCCCCTTTTCGACCTTGCTCCCAGATCCAGGAGCGG
ATCCGCCCGCCTTCGCTAGTTGGGGCGGCGGCAAGGACGGCGGCGGCTGC
CCATCGTCACTGAGATCGTCCTCCATGCCAGGCTCTTGGATGAGTACTGA
GTATGC
BS07956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4641-PA | 885 | CG4641-RA | 46..885 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RF | 5420 | CG43479-RF | 3218..4058 | 856..16 | 4205 | 100 | Minus |
nwk-RG | 4695 | CG43479-RG | 2500..3333 | 849..16 | 4170 | 100 | Minus |
nwk-RK | 4713 | CG43479-RK | 2518..3351 | 849..16 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9143525..9144331 | 822..16 | 4035 | 100 | Minus |
3L | 28110227 | 3L | 9143288..9143324 | 856..820 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 00:58:48 has no hits.
BS07956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:05 Download gff for
BS07956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 46..885 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:51 Download gff for
BS07956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 46..885 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:16 Download gff for
BS07956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3218..4058 | 16..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:28 Download gff for
BS07956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3218..4058 | 16..856 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:28 Download gff for
BS07956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9143288..9143323 | 821..856 | 100 | -> | Minus |
3L | 9143527..9144331 | 16..820 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:16 Download gff for
BS07956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9136388..9136423 | 821..856 | 100 | -> | Minus |
arm_3L | 9136627..9137431 | 16..820 | 100 | | Minus |
BS07956.5prime Sequence
907 bp (820 high quality bases) assembled on 2006-01-06
> BS07956.5prime
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGAACGCTTA
GAAGCTT
BS07956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4641-PA | 885 | CG4641-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RF | 5420 | CG43479-RF | 3173..4058 | 17..902 | 4430 | 100 | Plus |
nwk-RG | 4695 | CG43479-RG | 2500..3333 | 69..902 | 4170 | 100 | Plus |
nwk-RK | 4713 | CG43479-RK | 2518..3351 | 69..902 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9143525..9144331 | 96..902 | 4035 | 100 | Plus |
3L | 28110227 | 3L | 9143243..9143324 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:56:21 has no hits.
BS07956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:06 Download gff for
BS07956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:24:52 Download gff for
BS07956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:34:32 Download gff for
BS07956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4060 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:15 Download gff for
BS07956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4060 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:15 Download gff for
BS07956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9143243..9143323 | 17..97 | 100 | -> | Plus |
3L | 9143527..9144333 | 98..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:34:32 Download gff for
BS07956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9136343..9136423 | 17..97 | 100 | -> | Plus |
arm_3L | 9136627..9137433 | 98..907 | 99 | | Plus |
BS07956.complete Sequence
917 bp (917 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636041
> BS07956.complete
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGAACGCTTA
GAAGCTTTCTAGACCAT
BS07956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RG | 3207 | CG43479-PG | 2375..3207 | 69..901 | 4165 | 100 | Plus |
nwk-RK | 3150 | CG43479-PK | 2318..3150 | 69..901 | 4165 | 100 | Plus |
nwk-RD | 3207 | CG43479-PD | 2375..3207 | 69..901 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RF | 5420 | CG43479-RF | 3173..4058 | 17..902 | 4430 | 100 | Plus |
nwk-RG | 4695 | CG43479-RG | 2500..3333 | 69..902 | 4170 | 100 | Plus |
nwk-RK | 4713 | CG43479-RK | 2518..3351 | 69..902 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9143525..9144331 | 96..902 | 4035 | 100 | Plus |
3L | 28110227 | 3L | 9143243..9143324 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:33:38 has no hits.
BS07956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:05 Download gff for
BS07956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-RA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:24 Download gff for
BS07956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-RA | 463..1348 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:54 Download gff for
BS07956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4057 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:05 Download gff for
BS07956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-RA | 463..1348 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:52 Download gff for
BS07956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4057 | 17..901 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:52 Download gff for
BS07956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9143243..9143323 | 17..97 | 100 | -> | Plus |
3L | 9143527..9144330 | 98..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:54 Download gff for
BS07956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9136343..9136423 | 17..97 | 100 | -> | Plus |
arm_3L | 9136627..9137430 | 98..901 | 100 | | Plus |
BS07956.pep Sequence
Translation from 16 to 900
> BS07956.pep
MIDTKPTNLFSFIFNAYSVLIQEPGMEDDLSDDGQPPPSLPPPQLAKAGG
SAPGSGSKVEKGAAAGGANTLNLGMAQIIVTAATPMVEDGADKSFPPVGE
SDAQPVEPVSKEQPAEVAKKPDIAPKPLAKVAPQSAPAKEGNAGVRPVVS
ITLTEYPSCDAEDQQSFSEGTDSASVADVPVLQDAEDPFNEKAKGESGDG
SGFEANFEANFDANFDDAFAGIGGGGGGGGGGGEQSNELDINGEAAGEAI
VSGSAAGDEDIEAPKQVVGGRASIPEELDSNQLARLQNLKESNA*
BS07956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-PK | 1049 | CG43479-PK | 773..1049 | 18..294 | 1412 | 99.6 | Plus |
nwk-PG | 1068 | CG43479-PG | 793..1068 | 19..294 | 1411 | 100 | Plus |
nwk-PD | 1068 | CG43479-PD | 793..1068 | 19..294 | 1411 | 100 | Plus |
nwk-PJ | 1056 | CG43479-PJ | 773..1039 | 18..284 | 1364 | 99.6 | Plus |
nwk-PI | 1075 | CG43479-PI | 793..1058 | 19..284 | 1363 | 100 | Plus |