Clone Sequence Records
BS07959.3prime Sequence
946 bp (829 high quality bases) assembled on 2006-01-06
> BS07959.3prime
ATGGTCTAGAAAGCTTTTAAAACGCTTCCTCGCCCACAACATCACTGATG
GTGGCCACCAGGCGACGTGCATGCTCCACGGCGCATGTGGCGGTTACCAG
TCCCAGATGAATGCAATACAACTCGTAGACGCGCACTTTGGCCGGTGACA
GCTTGGGGAAGCACAACTCCGCCAGATCGTGGTAATAGTCCATTGTAAGA
GCACCTGGTTCTGTTGGGGATTTCGAACCGTTGCCACTGGCTGCTCCTGT
GGACAGAAAGTGGTGCTGCAAATCCACGACGGTACTAAGAACGCCACCAG
ACATGTCCTCGAACCAGAGGAAGTACGAGTAATGGAATGCCTTATCCTTC
CACATCACTGTGGTCTGGCCCTTCTTAAGGTAATTTCTCGCGATCTCCAC
CATGCTCCAGAGTTTTGTCTTTGGCACCAGCTGGTTCGGTCGCAGATCCG
GAGCAAGCATTTGTCCTCGGCTGCGATTGACGTACATAAAGTGCACCAGA
CCCGGAAAATCCTCCAAATAAGCATCAATGGATATGTTACGAGTGGCCTT
AACGGCCAGAAATTCAGCGAACTCCAGTAGCTTGGCTTCCACATTCGCTG
CCGTATCAGAGAGTTGATCCAGCTCATGGACACTTGAGCTGTCGCAGCAG
GCCAGTGTGAATATCTGCTTCAGTTCCTCTCCGAACGAGGGCAAATTCGA
CTCAATCCTCACGAGCAGCTCCCGCTCAAAGTTCTTGAAGTACTCAGTGT
ACATCTTGCGAAGATTCTCCCATTTAGCGGCGAACTTCTTCGTGCAGTTC
TCTAGGTCATCGGTTTCCGATCGCTGTTTCAGATATCGCTTCAAAGCGGT
CAAGGCCTGCACAATAAACGATTCGAGGTTCTCGAAGGCGGGCTTCAAGG
CATCCGAATCGCCCTGATGCTGAACAGCCACGATTTTTTGAAGCAC
BS07959.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12855-PA | 1791 | CG12855-RA | 862..1791 | 946..17 | 4625 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 2074 | CG12855-RA | 945..1874 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14856373..14857302 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 19:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porto1 | 4682 | Porto1 DOC5 4682bp | 1169..1205 | 375..411 | 113 | 78.4 | Plus |
BS07959.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:11 Download gff for
BS07959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 862..1791 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:00 Download gff for
BS07959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 862..1791 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:10:30 Download gff for
BS07959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 945..1881 | 10..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:23 Download gff for
BS07959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 945..1881 | 10..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:23 Download gff for
BS07959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14856373..14857309 | 10..946 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:10:30 Download gff for
BS07959.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10743878..10744814 | 10..946 | 99 | | Minus |
BS07959.5prime Sequence
906 bp (813 high quality bases) assembled on 2006-01-06
> BS07959.5prime
GAAGTTATCAGTCGACATGAACGGACTGATTGTGTTTAACAGCGCCAACG
ATGTTGTATACCAGAAGCTTAACGAGCCGCTGGCGCAGAAGATCCGGAGT
GTGGCCACCACCCAGGGCCTGCTCCAGTCCGGCGGCTCCCTGGACAGCAA
CATACTGCTGCAGATTTTCAGCCCCATCGTTGGATCTCAGCGAATAATGC
AGTGCCAGTTCGATAATGCCTACTCCAGCCTGCAGTGTGAGCAAGGCTTC
AATTTGGTGTTCGGCGAACTTCTTGGCTTCACCTTTCTGAAGATCGGACA
AATACCCGTGGAGCTGCTGGGTCGCCAAATGGGTGTGGCCATTACGCTGA
CGCGCTATTGTTACGGCGCCAATTTGTTTGCCGCCCAGGCGGGGGCCATG
CAACAGGAGTTGCTGACGCAGTGCCTCGACTGCTATGAGACTTTGTTGTG
GGAGGAGGATCAGACGTACCTGCTGGAGGCCATGCCCAGGCTGCTGATCA
ACACGGAACTAAAGAGGACAGTGCATCTGACGCTGGACGCCACGCTTGAG
CACTTGCGCCAGCTCGGACTGCCCCGAGCCCACGCCCTGTTGCTCGTTTC
CAACAAGCTGGTGGCCGCGAACAGCACTCGGCAAGCTCTGCCGCTTGCTG
CCGCCGACCTACTCTTCCTCAGCCTCATGTCACGCGCCCTGCAAGCGCCA
AAGTCCCCTTCCCAGCGAGCAGTAGCTGTATTCCTGCAGGGTGTCTCCTA
TGATGTGAACTCTGGCTGCGTTCCCAGTATCGTGCACATCTCGCGTCTCC
ATGGTAACCAAGTTCTCCTGCAGGTCATCGAGTACGCCCACATGCCACTG
ACCAGCTGCATCTACGATTCCTTCTTTGTGCTTCAAAAAATCGTGGCTGT
TCAACA
BS07959.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12855-PA | 1791 | CG12855-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 2074 | CG12855-RA | 84..970 | 17..903 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14855512..14856398 | 17..903 | 4435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:55:34 has no hits.
BS07959.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:12 Download gff for
BS07959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:01 Download gff for
BS07959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:34:26 Download gff for
BS07959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 79..972 | 10..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:10 Download gff for
BS07959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 79..972 | 10..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:10 Download gff for
BS07959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14855507..14856400 | 10..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:34:26 Download gff for
BS07959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10743012..10743905 | 10..905 | 99 | | Plus |
BS07959.complete Sequence
1823 bp assembled on 2007-10-31
GenBank Submission: FJ636042
> BS07959.complete
GAAGTTATCAGTCGACATGAACGGACTGATTGTGTTTAACAGCGCCAACG
ATGTTGTATACCAGAAGCTTAACGAGCCGCTGGCGCAGAAGATCCGGAGT
GTGGCCACCACCCAGGGCCTGCTCCAGTCCGGCGGCTCCCTGGACAGCAA
CATACTGCTGCAGATTTTCAGCCCCATCGTTGGATCTCAGCGAATAATGC
AGTGCCAGTTCGATAATGCCTACTCCAGCCTGCAGTGTGAGCAAGGCTTC
AATTTGGTGTTCGGCGAACTTCTTGGCTTCACCTTTCTGAAGATCGGACA
AATACCCGTGGAGCTGCTGGGTCGCCAAATGGGTGTGGCCATTACGCTGA
CGCGCTATTGTTACGGCGCCAATTTGTTTGCCGCCCAGGCGGGGGCCATG
CAACAGGAGTTGCTGACGCAGTGCCTCGACTGCTATGAGACTTTGTTGTG
GGAGGAGGATCAGACGTACCTGCTGGAGGCCATGCCCAGGCTGCTGATCA
ACACGGAACTAAAGAGGACAGTGCATCTGACGCTGGACGCCACGCTTGAG
CACTTGCGCCAGCTCGGACTGCCCCGAGCCCACGCCCTGTTGCTCGTTTC
CAACAAGCTGGTGGCCGCGAACAGCACTCGGCAAGCTCTGCCGCTTGCTG
CCGCCGACCTACTCTTCCTCAGCCTCATGTCACGCGCCCTGCAAGCGCCA
AAGTCCCCTTCCCAGCGAGCAGTAGCTGTATTCCTGCAGGGTGTCTCCTA
TGATGTGAACTCTGGCTGCGTTCCCAGTATCGTGCACATCTCGCGTCTCC
ATGGTAACCAAGTTCTCCTGCAGGTCATCGAGTACGCCCACATGCCACTG
ACCAGCTGCATCTACGATTCCTTCTTTGTGCTTCAAAAAATCGTGGCTGT
TCAGCATCAGGGCGATTCGGATGCCTTGAAGCCCGCCTTCGAGAACCTCG
AATCGTTTATTGTGCAGGCCTTGACCGCTTTGAAGCGATATCTGAAACAG
CGATCGGAAACCGATGACCTAGAGAACTGCACGAAGAAGTTCGCCGCTAA
ATGGGAGAATCTTCGCAAGATGTACACTGAGTACTTCAAGAACTTTGAGC
GGGAGCTGCTCGTGAGGATTGAGTCGAATTTGCCCTCGTTCGGAGAGGAA
CTGAAGCAGATATTCACACTGGCCTGCTGCGACAGCTCAAGTGTCCATGA
GCTGGATCAACTCTCTGATACGGCAGCGAATGTGGAAGCCAAGCTACTGG
AGTTCGCTGAATTTCTGGCCGTTAAGGCCACTCGTAACATATCCATTGAT
GCTTATTTGGAGGATTTTCCGGGTCTGGTGCACTTTATGTACGTCAATCG
CAGCCGAGGACAAATGCTTGCTCCGGATCTGCGACCGAACCAGCTGGTGC
CAAAGACAAAACTCTGGAGCATGGTGGAGATCGCGAGAAATTACCTTAAG
AAGGGCCAGACCACAGTGATGTGGAAGGATAAGGCATTCCATTACTCGTA
CTTCCTCTGGTTCGAGGACATGTCTGGTGGCGTTCTTAGTACCGTCGTGG
ATTTGCAGCACCACTTTCTGTCCACAGGAGCAGCCAGTGGCAACGGTTCG
AAATCCCCAACAGAACCAGGTGCTCTTACAATGGACTATTACCACGATCT
GGCGGAGTTGTGCTTCCCCAAGCTGTCACCGGCCAAAGTGCGCGTCTACG
AGTTGTATTGCATTCATCTGGGACTGGTAACCGCCACATGCGCCGTGGAG
CATGCACGTCGCCTGGTGGCCACCATCAGTGATGTTGTGGGCGAGGAAGC
GTTTTAAAAGCTTTCTAGACCAT
BS07959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 1791 | CG12855-PA | 1..1791 | 17..1807 | 8940 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 2074 | CG12855-RA | 84..1874 | 17..1807 | 8940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14855512..14857302 | 17..1807 | 8940 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-27 07:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porto1 | 4682 | Porto1 DOC5 4682bp | 1169..1205 | 1449..1413 | 113 | 78.4 | Minus |
BS07959.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:35 Download gff for
BS07959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS-RA | 1..1791 | 17..1807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:13 Download gff for
BS07959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS-RA | 66..1868 | 10..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:40 Download gff for
BS07959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 84..1872 | 17..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:52 Download gff for
BS07959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS-RA | 71..1859 | 17..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:57 Download gff for
BS07959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 84..1872 | 17..1805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:57 Download gff for
BS07959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14855512..14857300 | 17..1805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:40 Download gff for
BS07959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10743017..10744805 | 17..1805 | 99 | | Plus |
BS07959.pep Sequence
Translation from 16 to 1806
> BS07959.pep
MNGLIVFNSANDVVYQKLNEPLAQKIRSVATTQGLLQSGGSLDSNILLQI
FSPIVGSQRIMQCQFDNAYSSLQCEQGFNLVFGELLGFTFLKIGQIPVEL
LGRQMGVAITLTRYCYGANLFAAQAGAMQQELLTQCLDCYETLLWEEDQT
YLLEAMPRLLINTELKRTVHLTLDATLEHLRQLGLPRAHALLLVSNKLVA
ANSTRQALPLAAADLLFLSLMSRALQAPKSPSQRAVAVFLQGVSYDVNSG
CVPSIVHISRLHGNQVLLQVIEYAHMPLTSCIYDSFFVLQKIVAVQHQGD
SDALKPAFENLESFIVQALTALKRYLKQRSETDDLENCTKKFAAKWENLR
KMYTEYFKNFERELLVRIESNLPSFGEELKQIFTLACCDSSSVHELDQLS
DTAANVEAKLLEFAEFLAVKATRNISIDAYLEDFPGLVHFMYVNRSRGQM
LAPDLRPNQLVPKTKLWSMVEIARNYLKKGQTTVMWKDKAFHYSYFLWFE
DMSGGVLSTVVDLQHHFLSTGAASGNGSKSPTEPGALTMDYYHDLAELCF
PKLSPAKVRVYELYCIHLGLVTATCAVEHARRLVATISDVVGEEAF*
BS07959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-PA | 596 | CG12855-PA | 1..596 | 1..596 | 3051 | 100 | Plus |
