Clone Sequence Records
BS07960.3prime Sequence
888 bp (831 high quality bases) assembled on 2006-01-06
> BS07960.3prime
ATGGTCTAGAAAGCTTTTAGGTGCGCTTGACGAACTGCACCTTGTATGGT
TTTGGAGTAAGCGTAATCCCAGGCAGAAGCACCATTGATGGAGACTCTCC
CGCCGGCAGGACAACGCTAAAATGCTGCACGATCCGCACTAGAAACGAGA
AGATGCAGGCACGGGCGAGGGCATCGCCCAGACAACGGCGTCTGCCCATG
CCGAAGGGCATGAAGTACTCGTCCTTGAAGCACTTGCCAGCCGAATCGAT
GAACCTCTCTGGGCGGAACTCCAGCGGATCCTTCCAGTGCTCCTTATCGA
GATGCACTGAACGTAGGCTAATCAGAATTGTGGCATTTTTCGGAATGTCG
TAGCCACCCAGCTTGGTTGCCCACAAAGCTCTGCGTGGACCCGTAATGGG
AGTGATGTGGAAGAAGCGCTGCACCTCCATGATGAAGGCATCCATGTAGT
CAAAGGCTTCCCGACGGCTCAAGTGAGGAAACGCATCTGTGCTGGCAGCA
GCCACGCTGGCGGTCACTTGGCTGAACAGCTTCTCCTGCACATCCGGGCG
CATAGCAAGTACCATTAGGGCCAGGTTGATCGTATTGCTAGTGGTCTGGG
AGCCTGCAATGAAGAAGTCCAGGATGGTCATCACCAGCTGCGTCTCATTG
AATGTGCTGCTCTCGCCGCCAGCACTGCGGTCCTTCATCTCCTGGAGGTA
GGCATAGATGAGATCGCTTTCCGCCGGCGACGGATCCTTCGCCAGCTGCC
GTCGGTGCTCCTCGATGGTGTCCATAAAGAAACCGTACAGCTCTGTGTTC
AGTTGCTGGATGAGATTGTAGCCAGTGCGATCGGGGGCCACGTGGCGCAG
CCAGGGAAACTGGGCCAGCAGACCACCGCAGATGTCAA
BS07960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8733-PA | 1515 | Cyp305a1-RA | 644..1515 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 781..1652 | 888..17 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19810552..19811423 | 17..888 | 4360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:34:43 has no hits.
BS07960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:13 Download gff for
BS07960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 646..1515 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:03 Download gff for
BS07960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 646..1515 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:43 Download gff for
BS07960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 783..1655 | 11..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:42 Download gff for
BS07960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 783..1655 | 11..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:42 Download gff for
BS07960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19810549..19811421 | 11..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:43 Download gff for
BS07960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19803649..19804521 | 11..886 | 99 | | Plus |
BS07960.5prime Sequence
822 bp (806 high quality bases) assembled on 2006-01-06
> BS07960.5prime
GAAGTTATCAGTCGACATGAGTGCCCTCATATTTCTGTGCGCGATTCTAA
TTGGTTTCGTGATTTATTCACTCATCAGCTCGGCGCGGCGTCCCAAGAAC
TTTCCACCAGGACCTCGATTTGTGCCATGGTTAGGAAACACATTACAGTT
CCGTAAGGAAGCTAGTGCTGTTGGCGGCCAGCACATCCTGTTCGAGCGCT
GGGCAAAAGACTTCCGGAGCGACCTGGTGGGTCTGAAGCTGGGCCGCGAA
TATGTGGTGGTTGCCCTTGGCCACGAGATGGTGAAGGAAGTGCAGCTGCA
GGAGGTGTTCGAGGGGCGACCAGATAACTTCTTTCTGCGTCTGCGAACCA
TGGGAACCCGCAAGGGCATCACCTGTACGGACGGACAGCTTTGGTACGAG
CACCGACATTTTGCCATGAAGCAGATGCGCAACGTGGGCTACGGACGCAG
CCAGATGGAGCATCACATCGAACTGGAGGCGGAAGAGCTGCTGGGGCAGC
TGGAGCGCACCGAGGAGCAGCCGATCGAGCCGGTCACTTGGCTGGCGCAG
AGTGTACTCAATGTACTGTGGTGTCTGATAGCTGGAAAGAGGATCGCCAG
ACAGGAGGATGGGACGTTGCGGCGTCTGCTCGACCTGATGAATCGGCGTT
CCAAACTCTTTGACATCTGCGGTGGTCTGCTGGCCCAGTTTCCCTGGCTG
CGCCACGTGGCCCCCGATCGCACTGGCTACAATCTCATCCAGCAACTGAA
CACAGAGCTGTACGGTTTCTTTATGGACACCATCGAGGAGCACCGACGGC
AGCTGGCGAAAGATCCGTCGCC
BS07960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8733-PA | 1515 | Cyp305a1-RA | 1..806 | 17..822 | 4005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 138..943 | 17..822 | 4015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19811261..19811937 | 822..146 | 3370 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19813108..19813202 | 111..17 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 19812170..19812210 | 148..108 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:42:55 has no hits.
BS07960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:15 Download gff for
BS07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:04 Download gff for
BS07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:35 Download gff for
BS07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 127..943 | 3..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:30 Download gff for
BS07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 127..943 | 3..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:30 Download gff for
BS07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19811261..19811934 | 149..822 | 99 | <- | Minus |
| 3L | 19812170..19812207 | 111..148 | 100 | <- | Minus |
| 3L | 19813109..19813213 | 3..110 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:35 Download gff for
BS07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19804361..19805034 | 149..822 | 99 | <- | Minus |
| arm_3L | 19805270..19805307 | 111..148 | 100 | <- | Minus |
| arm_3L | 19806209..19806313 | 3..110 | 95 | | Minus |
BS07960.complete Sequence
1547 bp (1547 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636043
> BS07960.complete
GAAGTTATCAGTCGACATGAGTGCCCTCATATTTCTGTGCGCGATTCTAA
TTGGTTTCGTGATTTATTCACTCATCAGCTCGGCGCGGCGTCCCAAGAAC
TTTCCACCAGGACCTCGATTTGTGCCATGGTTAGGAAACACATTACAGTT
CCGTAAGGAAGCTAGTGCTGTTGGCGGCCAGCACATCCTGTTCGAGCGCT
GGGCAAAAGACTTCCGGAGCGACCTGGTGGGTCTGAAGCTGGGCCGCGAA
TATGTGGTGGTTGCCCTTGGCCACGAGATGGTGAAGGAAGTGCAGCTGCA
GGAGGTGTTCGAGGGGCGACCAGATAACTTCTTTCTGCGTCTGCGAACCA
TGGGAACCCGCAAGGGCATCACCTGTACGGACGGACAGCTTTGGTACGAG
CACCGACATTTTGCCATGAAGCAGATGCGCAACGTGGGCTACGGACGCAG
CCAGATGGAGCATCACATCGAACTGGAGGCGGAAGAGCTGCTGGGGCAGC
TGGAGCGCACCGAGGAGCAGCCGATCGAGCCGGTCACTTGGCTGGCGCAG
AGTGTACTCAATGTACTGTGGTGTCTGATAGCTGGAAAGAGGATCGCCAG
ACAGGAGGATGGGACGTTGCGGCGTCTGCTCGACCTGATGAATCGGCGTT
CCAAACTCTTTGACATCTGCGGTGGTCTGCTGGCCCAGTTTCCCTGGCTG
CGCCACGTGGCCCCCGATCGCACTGGCTACAATCTCATCCAGCAACTGAA
CACAGAGCTGTACGGTTTCTTTATGGACACCATCGAGGAGCACCGACGGC
AGCTGGCGAAGGATCCGTCGCCGGCGGAAAGCGATCTCATCTATGCCTAC
CTCCAGGAGATGAAGGACCGCAGTGCTGGCGGCGAGAGCAGCACATTCAA
TGAGACGCAGCTGGTGATGACCATCCTGGACTTCTTCATTGCAGGCTCCC
AGACCACTAGCAATACGATCAACCTGGCCCTAATGGTACTTGCTATGCGC
CCGGATGTGCAGGAGAAGCTGTTCAGCCAAGTGACCGCCAGCGTGGCTGC
TGCCAGCACAGATGCGTTTCCTCACTTGAGCCGTCGGGAAGCCTTTGACT
ACATGGATGCCTTCATCATGGAGGTGCAGCGCTTCTTCCACATCACTCCC
ATTACGGGTCCACGCAGAGCTTTGTGGGCAACCAAGCTGGGTGGCTACGA
CATTCCGAAAAATGCCACAATTCTGATTAGCCTACGTTCAGTGCATCTCG
ATAAGGAGCACTGGAAGGATCCGCTGGAGTTCCGCCCAGAGAGGTTCATC
GATTCGGCTGGCAAGTGCTTCAAGGACGAGTACTTCATGCCCTTCGGCAT
GGGCAGACGCCGTTGTCTGGGCGATGCCCTCGCCCGTGCCTGCATCTTCT
CGTTTCTAGTGCGGATCGTGCAGCATTTTAGCGTTGTCCTGCCGGCGGGA
GAGTCTCCATCAATGGTGCTTCTGCCTGGGATTACGCTTACTCCAAAACC
ATACAAGGTGCAGTTCGTCAAGCGCACCTAAAAGCTTTCTAGACCAT
BS07960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1515 | CG8733-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 138..1652 | 17..1531 | 7575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19810552..19811937 | 1531..146 | 6930 | 100 | Minus |
| 3L | 28110227 | 3L | 19813108..19813202 | 111..17 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 19812170..19812210 | 148..108 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:36:50 has no hits.
BS07960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:06 Download gff for
BS07960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 1..1515 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:26 Download gff for
BS07960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 111..1639 | 3..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:15 Download gff for
BS07960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 138..1650 | 17..1529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:06 Download gff for
BS07960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 111..1639 | 3..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:13 Download gff for
BS07960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 138..1650 | 17..1529 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:13 Download gff for
BS07960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19810554..19811934 | 149..1529 | 100 | <- | Minus |
| 3L | 19812170..19812207 | 111..148 | 100 | <- | Minus |
| 3L | 19813109..19813202 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:15 Download gff for
BS07960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19803654..19805034 | 149..1529 | 100 | <- | Minus |
| arm_3L | 19805270..19805307 | 111..148 | 100 | <- | Minus |
| arm_3L | 19806209..19806302 | 17..110 | 100 | | Minus |
BS07960.pep Sequence
Translation from 16 to 1530
> BS07960.pep
MSALIFLCAILIGFVIYSLISSARRPKNFPPGPRFVPWLGNTLQFRKEAS
AVGGQHILFERWAKDFRSDLVGLKLGREYVVVALGHEMVKEVQLQEVFEG
RPDNFFLRLRTMGTRKGITCTDGQLWYEHRHFAMKQMRNVGYGRSQMEHH
IELEAEELLGQLERTEEQPIEPVTWLAQSVLNVLWCLIAGKRIARQEDGT
LRRLLDLMNRRSKLFDICGGLLAQFPWLRHVAPDRTGYNLIQQLNTELYG
FFMDTIEEHRRQLAKDPSPAESDLIYAYLQEMKDRSAGGESSTFNETQLV
MTILDFFIAGSQTTSNTINLALMVLAMRPDVQEKLFSQVTASVAAASTDA
FPHLSRREAFDYMDAFIMEVQRFFHITPITGPRRALWATKLGGYDIPKNA
TILISLRSVHLDKEHWKDPLEFRPERFIDSAGKCFKDEYFMPFGMGRRRC
LGDALARACIFSFLVRIVQHFSVVLPAGESPSMVLLPGITLTPKPYKVQF
VKRT*
BS07960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-PA | 504 | CG8733-PA | 1..504 | 1..504 | 2633 | 100 | Plus |
| Cyp303a1-PB | 503 | CG4163-PB | 10..501 | 8..503 | 703 | 32.9 | Plus |
| Cyp303a1-PA | 503 | CG4163-PA | 10..501 | 8..503 | 703 | 32.9 | Plus |
| Cyp18a1-PB | 538 | CG6816-PB | 28..520 | 4..503 | 549 | 29.9 | Plus |
| Cyp18a1-PA | 538 | CG6816-PA | 28..520 | 4..503 | 549 | 29.9 | Plus |
