Clone Sequence Records
BS07962.3prime Sequence
903 bp (873 high quality bases) assembled on 2006-01-06
> BS07962.3prime
ATGGTCTAGAAAGCTTTCAATTGATCAGGTGCAGCAGCACGTGATTGGCA
CTCGTCGTTACCTGTCGCTTTCGCAGATCCTGCTGACGACTTCCGTAGCG
GCACCAGTACACAAAATGCTTATTATTGTTCCACAGACTCTGTTTGGCTT
TGCGCGCCACCGACACCTGATTGCGAATATCCTTCTCGTTGTGCGGCACC
TTTTCCTTGTCGGCAAAGTTATTGATACGCAGCTCCCATCCGTGACTCCA
AATATCCGCCAATTGCATCTTGATCAACTTGTATGTACCATTCTCACGGA
TTTTCACCGAATATATCTCAATGGTCTCCGGCTTGGGTTTATTGTCTTTG
GCCACCTTGCAGAGCACGATTCCATACCAAGAGGCGACAGGCGTCTCATT
CTCGTCCTGCGTCTCCAGGAAACTGCTACCGTTGCGCGGGATGACCAGCC
GCTGGGATTGGTTTTGGATTTGGCTGTGACTATGGCTGTGATTGCGATGC
GGCGGCGATGGGTGGTTGGTCAGTGGGCAGTCGAGCTCCTCCAGAGCGTC
CACGTCGAGGTCGTTGTCACCGGTGTCGGCTGCTGCGGCCGCTGCTGCTG
CGTTAGCTGCGGCCGCCTCGGCTGCGGCGCTGCTGCGGATCTCGACCACG
AAACCGCACTCGACGACGGCGCANAAGATGCGCTGCTCCTCGGGCTTGAA
CCACTTGGATTCGCGCAGCTTTTGCACTGCCACACTGCTGCCGAATGTGG
CGCCCACGGTGCCGCCAGCAATTCCATTCTTTTGCCCGCTGGGCGGCAGT
AGGCGGTGGGCGGTGCCGGTTGTGGGATTCTGATGCTGCTGCAGTGGCGG
TGGCCAATTGGAGGTGGGCGAGCTGGGCGCCGATTGGGAGTAACCGCTGG
CAG
BS07962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32597-PA | 966 | l(1)G0469-RA | 80..966 | 903..17 | 4416 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 3709 | CG32597-RD | 467..1353 | 903..17 | 4424 | 99.9 | Minus |
l(1)G0469-RA | 1761 | CG32597-RA | 467..1353 | 903..17 | 4424 | 99.9 | Minus |
l(1)G0469-RC | 2729 | CG32597-RC | 467..1308 | 903..62 | 4199 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14210434..14210991 | 346..903 | 2779 | 99.8 | Plus |
X | 23542271 | X | 14206594..14206777 | 164..347 | 920 | 100 | Plus |
X | 23542271 | X | 14206317..14206468 | 17..168 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:06:41 has no hits.
BS07962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:18 Download gff for
BS07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 80..966 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:09 Download gff for
BS07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 80..966 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:33:27 Download gff for
BS07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 467..1357 | 14..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:15 Download gff for
BS07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 467..1357 | 14..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:15 Download gff for
BS07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14206313..14206466 | 14..166 | 99 | <- | Plus |
X | 14206597..14206775 | 167..345 | 100 | <- | Plus |
X | 14210434..14210991 | 346..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:33:27 Download gff for
BS07962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14100346..14100499 | 14..166 | 99 | <- | Plus |
arm_X | 14100630..14100808 | 167..345 | 100 | <- | Plus |
arm_X | 14104467..14105024 | 346..903 | 99 | | Plus |
BS07962.5prime Sequence
925 bp (811 high quality bases) assembled on 2006-01-06
> BS07962.5prime
GAAGTTATCAGTCGACATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGA
AATGGTGGCCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCC
AGCGGTTACTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACC
GCCACTGCAGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTAC
TGCCGCCCAGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCC
ACATTCGGCAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTT
CAAGCCCGAGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCG
TGGTCGAGATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCA
GCAGCAGCGGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGA
CGCTCTGGAGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGC
ATCGCAATCACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGG
CTGGTCATCCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAA
TGAGACGCCTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCA
AAGACAATAAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATC
CGTGAGAATGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTG
GAGTCACGGATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGG
TGCCGCACAACGAGAAGGATATTCGCAATCAGGTGTCGGTGGCGCGCAAA
GCCAAACAGAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCG
CTACGGAAGTCGTCAGCAGGATCTG
BS07962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32597-PA | 966 | l(1)G0469-RA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 3709 | CG32597-RD | 388..1296 | 17..925 | 4545 | 100 | Plus |
l(1)G0469-RC | 2729 | CG32597-RC | 388..1296 | 17..925 | 4545 | 100 | Plus |
l(1)G0469-RA | 1761 | CG32597-RA | 388..1296 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14210434..14211070 | 653..17 | 3185 | 100 | Minus |
X | 23542271 | X | 14206594..14206777 | 835..652 | 920 | 100 | Minus |
X | 23542271 | X | 14206374..14206468 | 925..831 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:39:51 has no hits.
BS07962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:19 Download gff for
BS07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:11 Download gff for
BS07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:37 Download gff for
BS07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1296 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:16 Download gff for
BS07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1296 | 17..925 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:16 Download gff for
BS07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14206374..14206466 | 833..925 | 100 | <- | Minus |
X | 14206597..14206775 | 654..832 | 100 | <- | Minus |
X | 14210434..14211070 | 17..653 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:37 Download gff for
BS07962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14100407..14100499 | 833..925 | 100 | <- | Minus |
arm_X | 14100630..14100808 | 654..832 | 100 | <- | Minus |
arm_X | 14104467..14105103 | 17..653 | 100 | | Minus |
BS07962.complete Sequence
998 bp (998 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636044
> BS07962.complete
GAAGTTATCAGTCGACATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGA
AATGGTGGCCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCC
AGCGGTTACTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACC
GCCACTGCAGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTAC
TGCCGCCCAGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCC
ACATTCGGCAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTT
CAAGCCCGAGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCG
TGGTCGAGATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCA
GCAGCAGCGGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGA
CGCTCTGGAGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGC
ATCGCAATCACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGG
CTGGTCATCCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAA
TGAGACGCCTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCA
AAGACAATAAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATC
CGTGAGAATGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTG
GAGTCACGGATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGG
TGCCGCACAACGAGAAGGATATTCGCAATCAGGTGTCGGTGGCGCGCAAA
GCCAAACAGAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCG
CTACGGAAGTCGTCAGCAGGATCTGCGAAAGCGACAGGTAACGACGAGTG
CCAATCACGTGCTGCTGCACCTGATCAATTGAAAGCTTTCTAGACCAT
BS07962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 966 | CG32597-PD | 1..966 | 17..982 | 4830 | 100 | Plus |
l(1)G0469-RA | 966 | CG32597-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
l(1)G0469-RC | 1017 | CG32597-PC | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 3709 | CG32597-RD | 388..1353 | 17..982 | 4830 | 100 | Plus |
l(1)G0469-RA | 1761 | CG32597-RA | 388..1353 | 17..982 | 4830 | 100 | Plus |
l(1)G0469-RC | 2729 | CG32597-RC | 388..1308 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14210434..14211070 | 653..17 | 3185 | 100 | Minus |
X | 23542271 | X | 14206594..14206777 | 835..652 | 920 | 100 | Minus |
X | 23542271 | X | 14206317..14206468 | 982..831 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:18 has no hits.
BS07962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:07 Download gff for
BS07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:28 Download gff for
BS07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 386..1355 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:14 Download gff for
BS07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1352 | 17..981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:07 Download gff for
BS07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 386..1355 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:05 Download gff for
BS07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1352 | 17..981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:05 Download gff for
BS07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14206318..14206466 | 833..981 | 100 | <- | Minus |
X | 14206597..14206775 | 654..832 | 100 | <- | Minus |
X | 14210434..14211070 | 17..653 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:14 Download gff for
BS07962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14100351..14100499 | 833..981 | 100 | <- | Minus |
arm_X | 14100630..14100808 | 654..832 | 100 | <- | Minus |
arm_X | 14104467..14105103 | 17..653 | 100 | | Minus |
BS07962.pep Sequence
Translation from 16 to 981
> BS07962.pep
MNRSNSFVSSLKWWPLQGHNNQPVAPPASGYSQSAPSSPTSNWPPPLQQH
QNPTTGTAHRLLPPSGQKNGIAGGTVGATFGSSVAVQKLRESKWFKPEEQ
RIFCAVVECGFVVEIRSSAAAEAAAANAAAAAAAADTGDNDLDVDALEEL
DCPLTNHPSPPHRNHSHSHSQIQNQSQRLVIPRNGSSFLETQDENETPVA
SWYGIVLCKVAKDNKPKPETIEIYSVKIRENGTYKLIKMQLADIWSHGWE
LRINNFADKEKVPHNEKDIRNQVSVARKAKQSLWNNNKHFVYWCRYGSRQ
QDLRKRQVTTSANHVLLHLIN*
BS07962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-PD | 321 | CG32597-PD | 1..321 | 1..321 | 1718 | 100 | Plus |
l(1)G0469-PA | 321 | CG32597-PA | 1..321 | 1..321 | 1718 | 100 | Plus |
l(1)G0469-PC | 338 | CG32597-PC | 1..309 | 1..309 | 1650 | 99.4 | Plus |