Clone BS07962 Report

Search the DGRC for BS07962

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0469-RA
Protein status:BS07962.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07962.3prime Sequence

903 bp (873 high quality bases) assembled on 2006-01-06

> BS07962.3prime
ATGGTCTAGAAAGCTTTCAATTGATCAGGTGCAGCAGCACGTGATTGGCA
CTCGTCGTTACCTGTCGCTTTCGCAGATCCTGCTGACGACTTCCGTAGCG
GCACCAGTACACAAAATGCTTATTATTGTTCCACAGACTCTGTTTGGCTT
TGCGCGCCACCGACACCTGATTGCGAATATCCTTCTCGTTGTGCGGCACC
TTTTCCTTGTCGGCAAAGTTATTGATACGCAGCTCCCATCCGTGACTCCA
AATATCCGCCAATTGCATCTTGATCAACTTGTATGTACCATTCTCACGGA
TTTTCACCGAATATATCTCAATGGTCTCCGGCTTGGGTTTATTGTCTTTG
GCCACCTTGCAGAGCACGATTCCATACCAAGAGGCGACAGGCGTCTCATT
CTCGTCCTGCGTCTCCAGGAAACTGCTACCGTTGCGCGGGATGACCAGCC
GCTGGGATTGGTTTTGGATTTGGCTGTGACTATGGCTGTGATTGCGATGC
GGCGGCGATGGGTGGTTGGTCAGTGGGCAGTCGAGCTCCTCCAGAGCGTC
CACGTCGAGGTCGTTGTCACCGGTGTCGGCTGCTGCGGCCGCTGCTGCTG
CGTTAGCTGCGGCCGCCTCGGCTGCGGCGCTGCTGCGGATCTCGACCACG
AAACCGCACTCGACGACGGCGCANAAGATGCGCTGCTCCTCGGGCTTGAA
CCACTTGGATTCGCGCAGCTTTTGCACTGCCACACTGCTGCCGAATGTGG
CGCCCACGGTGCCGCCAGCAATTCCATTCTTTTGCCCGCTGGGCGGCAGT
AGGCGGTGGGCGGTGCCGGTTGTGGGATTCTGATGCTGCTGCAGTGGCGG
TGGCCAATTGGAGGTGGGCGAGCTGGGCGCCGATTGGGAGTAACCGCTGG
CAG

BS07962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32597-PA 966 l(1)G0469-RA 80..966 903..17 4416 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469-RD 3709 CG32597-RD 467..1353 903..17 4424 99.9 Minus
l(1)G0469-RA 1761 CG32597-RA 467..1353 903..17 4424 99.9 Minus
l(1)G0469-RC 2729 CG32597-RC 467..1308 903..62 4199 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14210434..14210991 346..903 2779 99.8 Plus
X 23542271 X 14206594..14206777 164..347 920 100 Plus
X 23542271 X 14206317..14206468 17..168 760 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:06:41 has no hits.

BS07962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:18 Download gff for BS07962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32597-PA 80..966 17..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:09 Download gff for BS07962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32597-PA 80..966 17..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:33:27 Download gff for BS07962.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 467..1357 14..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:15 Download gff for BS07962.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 467..1357 14..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:15 Download gff for BS07962.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14206313..14206466 14..166 99 <- Plus
X 14206597..14206775 167..345 100 <- Plus
X 14210434..14210991 346..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:33:27 Download gff for BS07962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14100346..14100499 14..166 99 <- Plus
arm_X 14100630..14100808 167..345 100 <- Plus
arm_X 14104467..14105024 346..903 99   Plus

BS07962.5prime Sequence

925 bp (811 high quality bases) assembled on 2006-01-06

> BS07962.5prime
GAAGTTATCAGTCGACATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGA
AATGGTGGCCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCC
AGCGGTTACTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACC
GCCACTGCAGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTAC
TGCCGCCCAGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCC
ACATTCGGCAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTT
CAAGCCCGAGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCG
TGGTCGAGATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCA
GCAGCAGCGGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGA
CGCTCTGGAGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGC
ATCGCAATCACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGG
CTGGTCATCCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAA
TGAGACGCCTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCA
AAGACAATAAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATC
CGTGAGAATGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTG
GAGTCACGGATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGG
TGCCGCACAACGAGAAGGATATTCGCAATCAGGTGTCGGTGGCGCGCAAA
GCCAAACAGAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCG
CTACGGAAGTCGTCAGCAGGATCTG

BS07962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32597-PA 966 l(1)G0469-RA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469-RD 3709 CG32597-RD 388..1296 17..925 4545 100 Plus
l(1)G0469-RC 2729 CG32597-RC 388..1296 17..925 4545 100 Plus
l(1)G0469-RA 1761 CG32597-RA 388..1296 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14210434..14211070 653..17 3185 100 Minus
X 23542271 X 14206594..14206777 835..652 920 100 Minus
X 23542271 X 14206374..14206468 925..831 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:39:51 has no hits.

BS07962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:19 Download gff for BS07962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32597-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:11 Download gff for BS07962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32597-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:37 Download gff for BS07962.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 388..1296 17..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:16 Download gff for BS07962.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 388..1296 17..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:16 Download gff for BS07962.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14206374..14206466 833..925 100 <- Minus
X 14206597..14206775 654..832 100 <- Minus
X 14210434..14211070 17..653 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:37 Download gff for BS07962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14100407..14100499 833..925 100 <- Minus
arm_X 14100630..14100808 654..832 100 <- Minus
arm_X 14104467..14105103 17..653 100   Minus

BS07962.complete Sequence

998 bp (998 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636044

> BS07962.complete
GAAGTTATCAGTCGACATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGA
AATGGTGGCCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCC
AGCGGTTACTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACC
GCCACTGCAGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTAC
TGCCGCCCAGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCC
ACATTCGGCAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTT
CAAGCCCGAGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCG
TGGTCGAGATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCA
GCAGCAGCGGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGA
CGCTCTGGAGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGC
ATCGCAATCACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGG
CTGGTCATCCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAA
TGAGACGCCTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCA
AAGACAATAAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATC
CGTGAGAATGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTG
GAGTCACGGATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGG
TGCCGCACAACGAGAAGGATATTCGCAATCAGGTGTCGGTGGCGCGCAAA
GCCAAACAGAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCG
CTACGGAAGTCGTCAGCAGGATCTGCGAAAGCGACAGGTAACGACGAGTG
CCAATCACGTGCTGCTGCACCTGATCAATTGAAAGCTTTCTAGACCAT

BS07962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469-RD 966 CG32597-PD 1..966 17..982 4830 100 Plus
l(1)G0469-RA 966 CG32597-PA 1..966 17..982 4830 100 Plus
l(1)G0469-RC 1017 CG32597-PC 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469-RD 3709 CG32597-RD 388..1353 17..982 4830 100 Plus
l(1)G0469-RA 1761 CG32597-RA 388..1353 17..982 4830 100 Plus
l(1)G0469-RC 2729 CG32597-RC 388..1308 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14210434..14211070 653..17 3185 100 Minus
X 23542271 X 14206594..14206777 835..652 920 100 Minus
X 23542271 X 14206317..14206468 982..831 760 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:18 has no hits.

BS07962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:07 Download gff for BS07962.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 1..966 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:28 Download gff for BS07962.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 386..1355 17..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:14 Download gff for BS07962.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 388..1352 17..981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:07 Download gff for BS07962.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 386..1355 17..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:05 Download gff for BS07962.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 388..1352 17..981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:05 Download gff for BS07962.complete
Subject Subject Range Query Range Percent Splice Strand
X 14206318..14206466 833..981 100 <- Minus
X 14206597..14206775 654..832 100 <- Minus
X 14210434..14211070 17..653 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:14 Download gff for BS07962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14100351..14100499 833..981 100 <- Minus
arm_X 14100630..14100808 654..832 100 <- Minus
arm_X 14104467..14105103 17..653 100   Minus

BS07962.pep Sequence

Translation from 16 to 981

> BS07962.pep
MNRSNSFVSSLKWWPLQGHNNQPVAPPASGYSQSAPSSPTSNWPPPLQQH
QNPTTGTAHRLLPPSGQKNGIAGGTVGATFGSSVAVQKLRESKWFKPEEQ
RIFCAVVECGFVVEIRSSAAAEAAAANAAAAAAAADTGDNDLDVDALEEL
DCPLTNHPSPPHRNHSHSHSQIQNQSQRLVIPRNGSSFLETQDENETPVA
SWYGIVLCKVAKDNKPKPETIEIYSVKIRENGTYKLIKMQLADIWSHGWE
LRINNFADKEKVPHNEKDIRNQVSVARKAKQSLWNNNKHFVYWCRYGSRQ
QDLRKRQVTTSANHVLLHLIN*

BS07962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469-PD 321 CG32597-PD 1..321 1..321 1718 100 Plus
l(1)G0469-PA 321 CG32597-PA 1..321 1..321 1718 100 Plus
l(1)G0469-PC 338 CG32597-PC 1..309 1..309 1650 99.4 Plus