Clone BS07963 Report

Search the DGRC for BS07963

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG8195-RA
Protein status:BS07963.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07963.3prime Sequence

918 bp (776 high quality bases) assembled on 2006-01-06

> BS07963.3prime
ATGGTCTAGAAAGCTTTTAATCGCTGTTGCTTATCAGCGACTCCTGTTGT
TCGTCATCGTTGACCCTAACAATGCTTGGCTTATGGCACCGGCAGACTTT
TCTATACACAATCCTAAAGAGCTTCATCAGTGGGTCGGAATCGTCGTTAC
GCATCAATAGCGAAACGAACACCAGGGCCACAAAGATGGGTATCGAGCCC
ATGTAGAACATCGGCGAATACGGTTTGTTCTTCAGCAGGACATCGAACAG
GATGGCTAGCGGAATCTGTAGCGACATTGCCAGCGTGCCAATCAGTGAGG
ATGTCAAAAAGCAGCCCCACAGCCAAAGAGCCTCCGACAGCACAGTGCCA
ACTAAGCCGTTCAAAAATAGAAGGGCAAACTGCCCTTGACTGGGCAGCTC
AAAGGTTTCTATTTTGGTGAAGTGGAGGATAAAGAATATTGGCCATAAAA
GCAACATATTCCATAGGCCAACAAAACCGAAAAACAATGGTATATCGACC
TTCTCCTCCGTATCGCTTTTTCGCTTCACGAAAACCAAATAGGCGGCATA
GAAGAAAGCGCTGAAAAGGGCTAAAAGGACGCCTCTGGTCATCTTGGTAT
CGTGTAGGTCGTTCATGGTGATGGCCACCACTCCGCCAATGTTCATGGCC
ACCGCAATCACCTTGGTGATAGTCAGCTTGTCACCTGTTGCCGAGGGAAA
TACGGCTGCCAGGCAGATAATGAAGAATGACGATGTTGAGCTAACCAGTG
TTATCATGGCCGCCTCGTCCATTTCCAGGGCCAGCTGAAAGAAGTAATTG
GCCGCAAACCAGAGCAGACAAAAGAGTAGCGCAGTCTTTGCCGTTTTGTG
GTGTGTCTTTTGGCGCCTAATTCTCAAGCTGGCGGCATACGAAAGCCTGG
CCATTAAGGCATCGGTGG

BS07963.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-PA 1350 CG8195-RA 449..1350 918..17 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-RA 2280 CG8195-RA 912..1814 918..16 4515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15563741..15564183 476..918 2215 100 Plus
2R 25286936 2R 15563270..15563689 65..484 2085 99.8 Plus
2R 25286936 2R 15563163..15563215 16..68 265 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:30:42 has no hits.

BS07963.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:20 Download gff for BS07963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-PA 449..1350 17..918 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:12 Download gff for BS07963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-PA 449..1350 17..918 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:33 Download gff for BS07963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 912..1814 16..918 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:52 Download gff for BS07963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 912..1814 16..918 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:52 Download gff for BS07963.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15563163..15563212 16..65 100 <- Plus
2R 15563271..15563682 66..477 100 <- Plus
2R 15563743..15564183 478..918 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:33 Download gff for BS07963.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11450668..11450717 16..65 100 <- Plus
arm_2R 11450776..11451187 66..477 100 <- Plus
arm_2R 11451248..11451688 478..918 100   Plus

BS07963.5prime Sequence

938 bp (813 high quality bases) assembled on 2006-01-06

> BS07963.5prime
GAAGTTATCAGTCGACATGCTAGGTCGCACACAACGTCTCCTGTTGGGCA
TATCAATACTGGTACTAGTCGATGTGGTTTGGGTCTCATCCAGTGAGCTG
ACAAAGTTCCTGTACAATGAGGCCAATTTTGACAAGCCCTTCTTCTGCAC
ATACTTCAAAACCTCCATGTTCAGCATTTACCTGCTAGTCATCGGTATCC
TGGCTCCCTGGAAAGAGTCATGCGAGCGACAGAATGGAAACTATGCTATG
ATGGAGCAGAATGCAGATGACGAGAATTATTACTCCAATCAGGCTGTTTT
GGGAGACCCAACCTATGTGCCCATCAGATCGCCTCACTTAGGAGCCGGAG
GACAATCCAATGGCACCTCAAACTCCATATCGGGCACCGAAAGCGATGAT
TCAAGTGTAAGAAGTGTGCGCTTCAGCAAGATGGCCGAAGTCAGAGAGAT
GTCTGCCCACGAAGCCACCGATGCCTTAATGGCCAGGCTTTCGTATGCCG
CCAGCTTGAGAATTAGGCGCCAAAAGACACACCACAAAACGGCAAAGACT
GCGCTACTCTTTTGTCTGCTCTGGTTTGCGGCCAATTACTTCTTTCAGCT
GGCCCTGGAAATGGACGAGGCGGCCATGATAACACTGGTTAGCTCAACAT
CGTCATTCTTCATTATCTGCCTGGCAGCCGTATTTCCCTCGGCAACAGGT
GACAAGCTGACTATCACCAAGGTGATTGCGGTGGCCATGAACATTGGCGG
AGTGGTGGCCATCACCATGAACGACCTACACGATACCAAGATGACCAGAG
GCGTCCTTTTAGCCCTTTTCAGCGCTTTCTTCTATGCCGCCTATTTGGTT
TTCGTGAAGCGAAAAAGCGATACGGAGGAGAGGGTCGATATACCATTGTT
TTTCGGTTTTGTTGGCCTATGGAATATGTTGCTTTTAT

BS07963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-PA 1350 CG8195-RA 1..922 17..938 4585 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-RA 2280 CG8195-RA 463..1385 16..938 4600 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15563741..15564347 907..301 3020 99.8 Minus
2R 25286936 2R 15564521..15564663 247..105 715 100 Minus
2R 25286936 2R 15564722..15564812 106..16 455 100 Minus
2R 25286936 2R 15564410..15564464 302..248 275 100 Minus
2R 25286936 2R 15563650..15563689 938..899 185 97.5 Minus
Blast to na_te.dros performed on 2015-02-10 20:39:28 has no hits.

BS07963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:21 Download gff for BS07963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:13 Download gff for BS07963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:49 Download gff for BS07963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 463..1385 16..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:57 Download gff for BS07963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 463..1385 16..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:57 Download gff for BS07963.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15563650..15563682 906..938 100 <- Minus
2R 15563743..15564346 302..905 99 <- Minus
2R 15564411..15564464 248..301 100 <- Minus
2R 15564521..15564661 107..247 100 <- Minus
2R 15564722..15564816 11..106 95 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:49 Download gff for BS07963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11451155..11451187 906..938 100 <- Minus
arm_2R 11451916..11451969 248..301 100 <- Minus
arm_2R 11451248..11451851 302..905 99 <- Minus
arm_2R 11452026..11452166 107..247 100 <- Minus
arm_2R 11452227..11452321 11..106 95 <- Minus

BS07963.complete Sequence

1382 bp (1382 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636045

> BS07963.complete
GAAGTTATCAGTCGACATGCTAGGTCGCACACAACGTCTCCTGTTGGGCA
TATCAATACTGGTACTAGTCGATGTGGTTTGGGTCTCATCCAGTGAGCTG
ACAAAGTTCCTGTACAATGAGGCCAATTTTGACAAGCCCTTCTTCTGCAC
ATACTTCAAAACCTCCATGTTCAGCATTTACCTGCTAGTCATCGGTATCC
TGGCTCCCTGGAAAGAGTCATGCGAGCGACAGAATGGAAACTATGCTATG
ATGGAGCAGAATGCAGATGACGAGAATTATTACTCCAATCAGGCTGTTTT
GGGAGACCCAACCTATGTGCCCATCAGATCGCCTCACTTAGGAGCCGGAG
GACAATCCAATGGCACCTCAAACTCCATATCGGGCACCGAAAGCGATGAT
TCAAGTGTAAGAAGTGTGCGCTTCAGCAAGATGGCCGAAGTCAGAGAGAT
GTCTGCCCACGAAGCCACCGATGCCTTAATGGCCAGGCTTTCGTATGCCG
CCAGCTTGAGAATTAGGCGCCAAAAGACACACCACAAAACGGCAAAGACT
GCGCTACTCTTTTGTCTGCTCTGGTTTGCGGCCAATTACTTCTTTCAGCT
GGCCCTGGAAATGGACGAGGCGGCCATGATAACACTGGTTAGCTCAACAT
CGTCATTCTTCATTATCTGCCTGGCAGCCGTATTTCCCTCGGCAACAGGT
GACAAGCTGACTATCACCAAGGTGATTGCGGTGGCCATGAACATTGGCGG
AGTGGTGGCCATCACCATGAACGACCTACACGATACCAAGATGACCAGAG
GCGTCCTTTTAGCCCTTTTCAGCGCTTTCTTCTATGCCGCCTATTTGGTT
TTCGTGAAGCGAAAAAGCGATACGGAGGAGAAGGTCGATATACCATTGTT
TTTCGGTTTTGTTGGCCTATGGAATATGTTGCTTTTATGGCCAATATTCT
TTATCCTCCACTTCACCAAAATAGAAACCTTTGAGCTGCCCAGTCAAGGG
CAGTTTGCCCTTCTATTTTTGAACGGCTTAGTTGGCACTGTGCTGTCGGA
GGCTCTTTGGCTGTGGGGCTGCTTTTTGACATCCTCACTGATTGGCACGC
TGGCAATGTCGCTACAGATTCCGCTAGCCATCCTGTTCGATGTCCTGCTG
AAGAACAAACCGTATTCGCCGATGTTCTACATGGGCTCGATACCCATCTT
TGTGGCCCTGGTGTTCGTTTCGCTATTGATGCGTAACGACGATTCCGACC
CACTGATGAAGCTCTTTAGGATTGTGTATAGAAAAGTCTGCCGGTGCCAT
AAGCCAAGCATTGTTAGGGTCAACGATGACGAACAACAGGAGTCGCTGAT
AAGCAACAGCGATTAAAAGCTTTCTAGACCAT

BS07963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-RA 1350 CG8195-PA 1..1350 17..1366 6750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-RA 2280 CG8195-RA 463..1814 16..1367 6760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15563741..15564347 907..301 3035 100 Minus
2R 25286936 2R 15563270..15563689 1318..899 2085 99.8 Minus
2R 25286936 2R 15564521..15564663 247..105 715 100 Minus
2R 25286936 2R 15564722..15564812 106..16 455 100 Minus
2R 25286936 2R 15564410..15564464 302..248 275 100 Minus
2R 25286936 2R 15563163..15563215 1367..1315 265 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:41:16 has no hits.

BS07963.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:08 Download gff for BS07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..1350 17..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:29 Download gff for BS07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 448..1799 16..1367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:58 Download gff for BS07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 464..1811 17..1364 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:08 Download gff for BS07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 448..1799 16..1367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:17 Download gff for BS07963.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 464..1811 17..1364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:17 Download gff for BS07963.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15563166..15563212 1318..1364 100 <- Minus
2R 15563271..15563682 906..1317 100 <- Minus
2R 15563743..15564346 302..905 100 <- Minus
2R 15564411..15564464 248..301 100 <- Minus
2R 15564521..15564661 107..247 100 <- Minus
2R 15564722..15564811 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:58 Download gff for BS07963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11452227..11452316 17..106 100   Minus
arm_2R 11450671..11450717 1318..1364 100 <- Minus
arm_2R 11450776..11451187 906..1317 100 <- Minus
arm_2R 11451248..11451851 302..905 100 <- Minus
arm_2R 11451916..11451969 248..301 100 <- Minus
arm_2R 11452026..11452166 107..247 100 <- Minus

BS07963.pep Sequence

Translation from 16 to 1365

> BS07963.pep
MLGRTQRLLLGISILVLVDVVWVSSSELTKFLYNEANFDKPFFCTYFKTS
MFSIYLLVIGILAPWKESCERQNGNYAMMEQNADDENYYSNQAVLGDPTY
VPIRSPHLGAGGQSNGTSNSISGTESDDSSVRSVRFSKMAEVREMSAHEA
TDALMARLSYAASLRIRRQKTHHKTAKTALLFCLLWFAANYFFQLALEMD
EAAMITLVSSTSSFFIICLAAVFPSATGDKLTITKVIAVAMNIGGVVAIT
MNDLHDTKMTRGVLLALFSAFFYAAYLVFVKRKSDTEEKVDIPLFFGFVG
LWNMLLLWPIFFILHFTKIETFELPSQGQFALLFLNGLVGTVLSEALWLW
GCFLTSSLIGTLAMSLQIPLAILFDVLLKNKPYSPMFYMGSIPIFVALVF
VSLLMRNDDSDPLMKLFRIVYRKVCRCHKPSIVRVNDDEQQESLISNSD*

BS07963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-PA 449 CG8195-PA 1..449 1..449 2295 100 Plus
CG42322-PJ 733 CG42322-PJ 305..555 180..432 164 23.4 Plus
CG42322-PI 733 CG42322-PI 305..555 180..432 164 23.4 Plus
CG42322-PN 743 CG42322-PN 305..555 180..432 164 23.4 Plus
CG42322-PD 578 CG31203-PE 305..522 180..401 157 23.3 Plus