Clone Sequence Records
BS07963.3prime Sequence
918 bp (776 high quality bases) assembled on 2006-01-06
> BS07963.3prime
ATGGTCTAGAAAGCTTTTAATCGCTGTTGCTTATCAGCGACTCCTGTTGT
TCGTCATCGTTGACCCTAACAATGCTTGGCTTATGGCACCGGCAGACTTT
TCTATACACAATCCTAAAGAGCTTCATCAGTGGGTCGGAATCGTCGTTAC
GCATCAATAGCGAAACGAACACCAGGGCCACAAAGATGGGTATCGAGCCC
ATGTAGAACATCGGCGAATACGGTTTGTTCTTCAGCAGGACATCGAACAG
GATGGCTAGCGGAATCTGTAGCGACATTGCCAGCGTGCCAATCAGTGAGG
ATGTCAAAAAGCAGCCCCACAGCCAAAGAGCCTCCGACAGCACAGTGCCA
ACTAAGCCGTTCAAAAATAGAAGGGCAAACTGCCCTTGACTGGGCAGCTC
AAAGGTTTCTATTTTGGTGAAGTGGAGGATAAAGAATATTGGCCATAAAA
GCAACATATTCCATAGGCCAACAAAACCGAAAAACAATGGTATATCGACC
TTCTCCTCCGTATCGCTTTTTCGCTTCACGAAAACCAAATAGGCGGCATA
GAAGAAAGCGCTGAAAAGGGCTAAAAGGACGCCTCTGGTCATCTTGGTAT
CGTGTAGGTCGTTCATGGTGATGGCCACCACTCCGCCAATGTTCATGGCC
ACCGCAATCACCTTGGTGATAGTCAGCTTGTCACCTGTTGCCGAGGGAAA
TACGGCTGCCAGGCAGATAATGAAGAATGACGATGTTGAGCTAACCAGTG
TTATCATGGCCGCCTCGTCCATTTCCAGGGCCAGCTGAAAGAAGTAATTG
GCCGCAAACCAGAGCAGACAAAAGAGTAGCGCAGTCTTTGCCGTTTTGTG
GTGTGTCTTTTGGCGCCTAATTCTCAAGCTGGCGGCATACGAAAGCCTGG
CCATTAAGGCATCGGTGG
BS07963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-PA | 1350 | CG8195-RA | 449..1350 | 918..17 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 2280 | CG8195-RA | 912..1814 | 918..16 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15563741..15564183 | 476..918 | 2215 | 100 | Plus |
2R | 25286936 | 2R | 15563270..15563689 | 65..484 | 2085 | 99.8 | Plus |
2R | 25286936 | 2R | 15563163..15563215 | 16..68 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:30:42 has no hits.
BS07963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:20 Download gff for
BS07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 449..1350 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:12 Download gff for
BS07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 449..1350 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:33 Download gff for
BS07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 912..1814 | 16..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:52 Download gff for
BS07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 912..1814 | 16..918 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:52 Download gff for
BS07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15563163..15563212 | 16..65 | 100 | <- | Plus |
2R | 15563271..15563682 | 66..477 | 100 | <- | Plus |
2R | 15563743..15564183 | 478..918 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:33 Download gff for
BS07963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11450668..11450717 | 16..65 | 100 | <- | Plus |
arm_2R | 11450776..11451187 | 66..477 | 100 | <- | Plus |
arm_2R | 11451248..11451688 | 478..918 | 100 | | Plus |
BS07963.5prime Sequence
938 bp (813 high quality bases) assembled on 2006-01-06
> BS07963.5prime
GAAGTTATCAGTCGACATGCTAGGTCGCACACAACGTCTCCTGTTGGGCA
TATCAATACTGGTACTAGTCGATGTGGTTTGGGTCTCATCCAGTGAGCTG
ACAAAGTTCCTGTACAATGAGGCCAATTTTGACAAGCCCTTCTTCTGCAC
ATACTTCAAAACCTCCATGTTCAGCATTTACCTGCTAGTCATCGGTATCC
TGGCTCCCTGGAAAGAGTCATGCGAGCGACAGAATGGAAACTATGCTATG
ATGGAGCAGAATGCAGATGACGAGAATTATTACTCCAATCAGGCTGTTTT
GGGAGACCCAACCTATGTGCCCATCAGATCGCCTCACTTAGGAGCCGGAG
GACAATCCAATGGCACCTCAAACTCCATATCGGGCACCGAAAGCGATGAT
TCAAGTGTAAGAAGTGTGCGCTTCAGCAAGATGGCCGAAGTCAGAGAGAT
GTCTGCCCACGAAGCCACCGATGCCTTAATGGCCAGGCTTTCGTATGCCG
CCAGCTTGAGAATTAGGCGCCAAAAGACACACCACAAAACGGCAAAGACT
GCGCTACTCTTTTGTCTGCTCTGGTTTGCGGCCAATTACTTCTTTCAGCT
GGCCCTGGAAATGGACGAGGCGGCCATGATAACACTGGTTAGCTCAACAT
CGTCATTCTTCATTATCTGCCTGGCAGCCGTATTTCCCTCGGCAACAGGT
GACAAGCTGACTATCACCAAGGTGATTGCGGTGGCCATGAACATTGGCGG
AGTGGTGGCCATCACCATGAACGACCTACACGATACCAAGATGACCAGAG
GCGTCCTTTTAGCCCTTTTCAGCGCTTTCTTCTATGCCGCCTATTTGGTT
TTCGTGAAGCGAAAAAGCGATACGGAGGAGAGGGTCGATATACCATTGTT
TTTCGGTTTTGTTGGCCTATGGAATATGTTGCTTTTAT
BS07963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-PA | 1350 | CG8195-RA | 1..922 | 17..938 | 4585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 2280 | CG8195-RA | 463..1385 | 16..938 | 4600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15563741..15564347 | 907..301 | 3020 | 99.8 | Minus |
2R | 25286936 | 2R | 15564521..15564663 | 247..105 | 715 | 100 | Minus |
2R | 25286936 | 2R | 15564722..15564812 | 106..16 | 455 | 100 | Minus |
2R | 25286936 | 2R | 15564410..15564464 | 302..248 | 275 | 100 | Minus |
2R | 25286936 | 2R | 15563650..15563689 | 938..899 | 185 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:39:28 has no hits.
BS07963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:21 Download gff for
BS07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:13 Download gff for
BS07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:49 Download gff for
BS07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 463..1385 | 16..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:57 Download gff for
BS07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 463..1385 | 16..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:57 Download gff for
BS07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15563650..15563682 | 906..938 | 100 | <- | Minus |
2R | 15563743..15564346 | 302..905 | 99 | <- | Minus |
2R | 15564411..15564464 | 248..301 | 100 | <- | Minus |
2R | 15564521..15564661 | 107..247 | 100 | <- | Minus |
2R | 15564722..15564816 | 11..106 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:49 Download gff for
BS07963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11451155..11451187 | 906..938 | 100 | <- | Minus |
arm_2R | 11451916..11451969 | 248..301 | 100 | <- | Minus |
arm_2R | 11451248..11451851 | 302..905 | 99 | <- | Minus |
arm_2R | 11452026..11452166 | 107..247 | 100 | <- | Minus |
arm_2R | 11452227..11452321 | 11..106 | 95 | <- | Minus |
BS07963.complete Sequence
1382 bp (1382 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636045
> BS07963.complete
GAAGTTATCAGTCGACATGCTAGGTCGCACACAACGTCTCCTGTTGGGCA
TATCAATACTGGTACTAGTCGATGTGGTTTGGGTCTCATCCAGTGAGCTG
ACAAAGTTCCTGTACAATGAGGCCAATTTTGACAAGCCCTTCTTCTGCAC
ATACTTCAAAACCTCCATGTTCAGCATTTACCTGCTAGTCATCGGTATCC
TGGCTCCCTGGAAAGAGTCATGCGAGCGACAGAATGGAAACTATGCTATG
ATGGAGCAGAATGCAGATGACGAGAATTATTACTCCAATCAGGCTGTTTT
GGGAGACCCAACCTATGTGCCCATCAGATCGCCTCACTTAGGAGCCGGAG
GACAATCCAATGGCACCTCAAACTCCATATCGGGCACCGAAAGCGATGAT
TCAAGTGTAAGAAGTGTGCGCTTCAGCAAGATGGCCGAAGTCAGAGAGAT
GTCTGCCCACGAAGCCACCGATGCCTTAATGGCCAGGCTTTCGTATGCCG
CCAGCTTGAGAATTAGGCGCCAAAAGACACACCACAAAACGGCAAAGACT
GCGCTACTCTTTTGTCTGCTCTGGTTTGCGGCCAATTACTTCTTTCAGCT
GGCCCTGGAAATGGACGAGGCGGCCATGATAACACTGGTTAGCTCAACAT
CGTCATTCTTCATTATCTGCCTGGCAGCCGTATTTCCCTCGGCAACAGGT
GACAAGCTGACTATCACCAAGGTGATTGCGGTGGCCATGAACATTGGCGG
AGTGGTGGCCATCACCATGAACGACCTACACGATACCAAGATGACCAGAG
GCGTCCTTTTAGCCCTTTTCAGCGCTTTCTTCTATGCCGCCTATTTGGTT
TTCGTGAAGCGAAAAAGCGATACGGAGGAGAAGGTCGATATACCATTGTT
TTTCGGTTTTGTTGGCCTATGGAATATGTTGCTTTTATGGCCAATATTCT
TTATCCTCCACTTCACCAAAATAGAAACCTTTGAGCTGCCCAGTCAAGGG
CAGTTTGCCCTTCTATTTTTGAACGGCTTAGTTGGCACTGTGCTGTCGGA
GGCTCTTTGGCTGTGGGGCTGCTTTTTGACATCCTCACTGATTGGCACGC
TGGCAATGTCGCTACAGATTCCGCTAGCCATCCTGTTCGATGTCCTGCTG
AAGAACAAACCGTATTCGCCGATGTTCTACATGGGCTCGATACCCATCTT
TGTGGCCCTGGTGTTCGTTTCGCTATTGATGCGTAACGACGATTCCGACC
CACTGATGAAGCTCTTTAGGATTGTGTATAGAAAAGTCTGCCGGTGCCAT
AAGCCAAGCATTGTTAGGGTCAACGATGACGAACAACAGGAGTCGCTGAT
AAGCAACAGCGATTAAAAGCTTTCTAGACCAT
BS07963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 1350 | CG8195-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 2280 | CG8195-RA | 463..1814 | 16..1367 | 6760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15563741..15564347 | 907..301 | 3035 | 100 | Minus |
2R | 25286936 | 2R | 15563270..15563689 | 1318..899 | 2085 | 99.8 | Minus |
2R | 25286936 | 2R | 15564521..15564663 | 247..105 | 715 | 100 | Minus |
2R | 25286936 | 2R | 15564722..15564812 | 106..16 | 455 | 100 | Minus |
2R | 25286936 | 2R | 15564410..15564464 | 302..248 | 275 | 100 | Minus |
2R | 25286936 | 2R | 15563163..15563215 | 1367..1315 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:16 has no hits.
BS07963.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:08 Download gff for
BS07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:29 Download gff for
BS07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 448..1799 | 16..1367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:58 Download gff for
BS07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 464..1811 | 17..1364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:08 Download gff for
BS07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 448..1799 | 16..1367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:17 Download gff for
BS07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 464..1811 | 17..1364 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:17 Download gff for
BS07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15563166..15563212 | 1318..1364 | 100 | <- | Minus |
2R | 15563271..15563682 | 906..1317 | 100 | <- | Minus |
2R | 15563743..15564346 | 302..905 | 100 | <- | Minus |
2R | 15564411..15564464 | 248..301 | 100 | <- | Minus |
2R | 15564521..15564661 | 107..247 | 100 | <- | Minus |
2R | 15564722..15564811 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:58 Download gff for
BS07963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11452227..11452316 | 17..106 | 100 | | Minus |
arm_2R | 11450671..11450717 | 1318..1364 | 100 | <- | Minus |
arm_2R | 11450776..11451187 | 906..1317 | 100 | <- | Minus |
arm_2R | 11451248..11451851 | 302..905 | 100 | <- | Minus |
arm_2R | 11451916..11451969 | 248..301 | 100 | <- | Minus |
arm_2R | 11452026..11452166 | 107..247 | 100 | <- | Minus |
BS07963.pep Sequence
Translation from 16 to 1365
> BS07963.pep
MLGRTQRLLLGISILVLVDVVWVSSSELTKFLYNEANFDKPFFCTYFKTS
MFSIYLLVIGILAPWKESCERQNGNYAMMEQNADDENYYSNQAVLGDPTY
VPIRSPHLGAGGQSNGTSNSISGTESDDSSVRSVRFSKMAEVREMSAHEA
TDALMARLSYAASLRIRRQKTHHKTAKTALLFCLLWFAANYFFQLALEMD
EAAMITLVSSTSSFFIICLAAVFPSATGDKLTITKVIAVAMNIGGVVAIT
MNDLHDTKMTRGVLLALFSAFFYAAYLVFVKRKSDTEEKVDIPLFFGFVG
LWNMLLLWPIFFILHFTKIETFELPSQGQFALLFLNGLVGTVLSEALWLW
GCFLTSSLIGTLAMSLQIPLAILFDVLLKNKPYSPMFYMGSIPIFVALVF
VSLLMRNDDSDPLMKLFRIVYRKVCRCHKPSIVRVNDDEQQESLISNSD*
BS07963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-PA | 449 | CG8195-PA | 1..449 | 1..449 | 2295 | 100 | Plus |
CG42322-PJ | 733 | CG42322-PJ | 305..555 | 180..432 | 164 | 23.4 | Plus |
CG42322-PI | 733 | CG42322-PI | 305..555 | 180..432 | 164 | 23.4 | Plus |
CG42322-PN | 743 | CG42322-PN | 305..555 | 180..432 | 164 | 23.4 | Plus |
CG42322-PD | 578 | CG31203-PE | 305..522 | 180..401 | 157 | 23.3 | Plus |