Clone BS07964 Report

Search the DGRC for BS07964

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG31781-RB
Protein status:BS07964.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07964.3prime Sequence

393 bp (392 high quality bases) assembled on 2006-01-06

> BS07964.3prime
ATGGTCTAGAAAGCTTCTAATGTTTCATGTCCCCGATGTTCTGGGGCGAT
GGCTTGGGCATGTGACTTACGACTAGAGAACTATAATATAGGAGACGTTG
GCATAATAATATGTCTAAGAGATTGACAATCGGCTTGGGGTCTCCGGCTG
AGGTCCTGGATGCCGTGCCTTTGGCCCTTCGTACGGCCGTGATAGTGCGC
ACAAGCCGCGATTTGATTGGTGATTGGTCGTCCTGTCGCCGGTCGTCCTG
CAGCCAATGCGCTGCCTCCAAAAAGGACTCGTCGTTGGCCTCCTGGCCGG
GAGGAGGGTGGTGTCCTCGGGTCGGGGGTTGAGTCGTTGGCAGCCCGGCA
ATGCAGTTGGCAACACTCTGTTTGGCCATGTCGACTGATAACT

BS07964.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31781-PB 363 CG31781-RB 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 00:39:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16877840..16878202 379..17 1815 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:39:26 has no hits.

BS07964.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:22 Download gff for BS07964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31781-PB 1..363 17..379 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:15 Download gff for BS07964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31781-PB 1..363 17..379 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:21 Download gff for BS07964.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16877837..16878201 18..383 99 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:21 Download gff for BS07964.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16877837..16878201 18..383 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:50 Download gff for BS07964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16877837..16878201 18..383 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:50 Download gff for BS07964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16877837..16878201 18..383 99 -> Minus

BS07964.5prime Sequence

393 bp (392 high quality bases) assembled on 2006-01-06

> BS07964.5prime
GAAGTTATCAGTCGACATGGCCAAACAGAGTGTTGCCAACTGCATTGCCG
GGCTGCCAACGACTCAACCCCCGACCCGAGGACACCACCCTCCTCCCGGC
CAGGAGGCCAACGACGAGTCCTTTTTGGAGGCAGCGCATTGGCTGCAGGA
CGACCGGCGACAGGACGACCAATCACCAATCAAATCGCGGCTTGTGCGCA
CTATCACGGCCGTACGAAGGGCCAAAGGCACGGCATCCAGGACCTCAGCC
GGAGACCCCAAGCCGATTGTCAATCTCTTAGACATATTATTATGCCAACG
TCTCCTATATTATAGTTCTCTAGTCGTAAGTCACATGCCCAAGCCATCGC
CCCAGAACATCGGGGACATGAAACATTAGAAGCTTTCTAGACC

BS07964.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31781-PB 363 CG31781-RB 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 13:48:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16877840..16878202 17..379 1815 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:48:31 has no hits.

BS07964.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:23 Download gff for BS07964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31781-PB 1..363 17..379 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:17 Download gff for BS07964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31781-PB 1..363 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:29 Download gff for BS07964.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16877837..16878201 13..378 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:29 Download gff for BS07964.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16877837..16878201 13..378 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:04 Download gff for BS07964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16877837..16878201 13..378 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:04 Download gff for BS07964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16877837..16878201 13..378 99 -> Plus

BS07964.complete Sequence

395 bp (395 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636046

> BS07964.complete
GAAGTTATCAGTCGACATGGCCAAACAGAGTGTTGCCAACTGCATTGCCG
GGCTGCCAACGACTCAACCCCCGACCCGAGGACACCACCCTCCTCCCGGC
CAGGAGGCCAACGACGAGTCCTTTTTGGAGGCAGCGCATTGGCTGCAGGA
CGACCGGCGACAGGACGACCAATCACCAATCAAATCGCGGCTTGTGCGCA
CTATCACGGCCGTACGAAGGGCCAAAGGCACGGCATCCAGGACCTCAGCC
GGAGACCCCAAGCCGATTGTCAATCTCTTAGACATATTATTATGCCAACG
TCTCCTATATTATAGTTCTCTAGTCGTAAGTCACATGCCCAAGCCATCGC
CCCAGAACATCGGGGACATGAAACATTAGAAGCTTTCTAGACCAT

BS07964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:57:06 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:57:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16877840..16878202 17..379 1815 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:57:05 has no hits.

BS07964.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:44 Download gff for BS07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG31781-RB 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:53 Download gff for BS07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG31781-RB 1852..2220 13..386 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:45 Download gff for BS07964.complete
Subject Subject Range Query Range Percent Splice Strand
CG31781-RB 1852..2220 13..386 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:34 Download gff for BS07964.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16877840..16878202 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:34 Download gff for BS07964.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16877840..16878202 17..379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:10 Download gff for BS07964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16877840..16878202 17..379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:10 Download gff for BS07964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16877840..16878202 17..379 100   Plus

BS07964.pep Sequence

Translation from 16 to 378

> BS07964.pep
MAKQSVANCIAGLPTTQPPTRGHHPPPGQEANDESFLEAAHWLQDDRRQD
DQSPIKSRLVRTITAVRRAKGTASRTSAGDPKPIVNLLDILLCQRLLYYS
SLVVSHMPKPSPQNIGDMKH*
Sequence BS07964.pep has no blast hits.