Clone Sequence Records
BS07966.3prime Sequence
953 bp (848 high quality bases) assembled on 2006-01-06
> BS07966.3prime
ATGGTCTAGAAAGCTTTTACTGCAACATGCGAACCAGTGTGTCGCGCATC
CAGAGCACAATGGTGGGTGGTTGTTTCATCTCAGTCGGAATAGCATATCG
TCTCGAGCTCAAGAAAATTGCCCGTCCCTCGCAATCCGTATACCTCGTTT
TGCGGTGCGTGTGAAAGCCCAGGCTGGGTCCACAAGTGGCTGCCTTCTTA
ATCTTCGGCTTATGAGCACAGGTCTTGGTTTTGGATGCACAGCTCTTGGT
CTTTGGCTTGGTGGATCTGTGAAAGAAGCCAATGCCACCACCTTTGGTTC
TGGAACGGGCTCGATCCCGTGAATGACAGCAGGAACCACTGAGGTTGGTC
ACCTGCGATATGGCAAACGCAACGAGCAGCAGCCCGAACACAATGGCCAC
CGCCACCTGAATGTTGCGATCGGCGTTCTTCAGGTCCACCAGCAACTGGA
CAACATGGTAGCCCAGAGTAATCCAAAATGTTATCGTGCAGATGGCAAAA
AAAACTAAAACACCGAGGACCTCCAATAGGAAGGTAATGAAGAAGTTAAG
CTGCTCACTTCCGAAATCTGTTCCAAAAGTTCCCCGCTGCCCGGCGCCAA
CTTGCTTATAGCCGCCACCTTGAGCTCCTCGTAGGGCGCTCTGTACAGGT
GGGCCTCCTGATCCCGTTGTCAATATTAATGGACCAGTTCCCATGGTTCC
CGGACCTAGAAAGCTTCCGGGATCAACGCCATGGGCCTGACCGCATCCAA
AATCACAGCCAGTTCCATAGCCACAGTCCTCATCGCATGCAACGCCCAGA
CTGCATCGGTTCTGGCCCAAATTAGCGGCGCCCAGACTGATGGCGAATCC
CAGGGTGTCTCTGCCGGCAGGTCCAGCGGCAACTTGTTGTTGTCGCGCCG
CCAAACATGGTGGCAGGCTCCACGCTCCTCTCACTCTCACCCCTGTTGCC
ATT
BS07966.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-PA | 1554 | CG4955-RA | 669..1554 | 902..17 | 4430 | 100 | Minus |
| CG4955-PA | 1554 | CG4955-RA | 616..649 | 953..920 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1838 | CG4955-RA | 753..1691 | 953..17 | 4630 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17082723..17083209 | 503..17 | 2435 | 100 | Minus |
| X | 23542271 | X | 17082199..17082650 | 953..504 | 2145 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:39:19 has no hits.
BS07966.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:26 Download gff for
BS07966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 616..1554 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:21 Download gff for
BS07966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 616..1554 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:48 Download gff for
BS07966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 694..1632 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:56 Download gff for
BS07966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 753..1691 | 17..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:56 Download gff for
BS07966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17082199..17082650 | 504..953 | 99 | -> | Minus |
| X | 17082723..17083209 | 17..503 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:48 Download gff for
BS07966.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16976232..16976683 | 504..953 | 99 | -> | Minus |
| arm_X | 16976756..16977242 | 17..503 | 100 | | Minus |
BS07966.5prime Sequence
942 bp (816 high quality bases) assembled on 2006-01-06
> BS07966.5prime
GAAGTTATCAGTCGACATGGAGAGGCGAAGACCCCGAAAGTCCTCGCGTA
AATACGTGTGCTCCAAATCAAACTCTTCAGTTGGAGGAGGAGTAGAGGAA
GACAGTGGCTCATCATTGCCTGCCACCGCCAAAGCGTTACTCCTCCAGCC
GGACGGTAATAAAGCACCAACCATGACATCCCTTCTGGGCGAACGACTCA
GAAGAGTTTCTCGCATCGCAAGAGCTCCGCACAGCCTACAAGTTACCGAA
AATCCAGAAGAAGGTGGAGCACCAATCGTACCACTAAGAGAATCCGGCGC
ATCGGAAGTGTCAGAAGTAAATCCGGGGGTTATGGTCATTCCGGAGTCGG
CCAGTCCCCGGGGATCGGCGGTGCATGGACAACACGCTAGCTTGGTCTTC
AGTGCTGAAGCCAGGGATTCGGACAGTACGCGGATATCGGAGGAAATGGT
GGAAGTGTTCCAAACCTCTTCGGCGAGAACCACATCCAATGAGCCCGCAG
GGGGCAATCTGCGCTTTGAAACCACTCCCGTGGCTGTAAGCGAAAGTATG
GTTGGCAATATAAACTTCTCCCCGAACGCCATCTACGATCAGAACAGGTA
TAGCAGCATGATGTCCAACGGGGATTACAATAATGGCAACAGGGGTGAGA
GTGAGAGGAGCGTGGGAGCCTGCCACCATGGTTGGGCGGCGCGACAACAA
CAAGTTGCCGCTGGACCTGCCGGCAGAGACACCCTGGGATTCGCCATCAG
TCTGGGCGCCGCTAATTTGGGCCAGAACCGATGCAGTCTGGGCGTTGCAT
GCGATGAGGACTGTGGCTATGGAACTGGCTGTGATTTTGGATGCGGTCAG
GCCCATGGCGTTGATCCCGGAAGCTTTCTAGGTCCGGGAACCATGGGAAC
TGGTCCATTAATATTTGACACGGGATCAGGAGGCCCACCTGT
BS07966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-PA | 1554 | CG4955-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1838 | CG4955-RA | 138..1063 | 17..942 | 4585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17081584..17082509 | 17..942 | 4570 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:03:12 has no hits.
BS07966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:27 Download gff for
BS07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:22 Download gff for
BS07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:57 Download gff for
BS07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 73..1004 | 7..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:01 Download gff for
BS07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 132..1063 | 7..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:01 Download gff for
BS07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17081578..17082509 | 7..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:57 Download gff for
BS07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16975611..16976542 | 7..942 | 99 | | Plus |
BS07966.complete Sequence
1586 bp (1586 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636047
> BS07966.complete
GAAGTTATCAGTCGACATGGAGAGGCGAAGACCCCGAAAGTCCTCGCGTA
AATACGTGTGCTCCAAATCAAACTCTTCAGTTGGAGGAGGAGTAGAGGAA
GACAGTGGCTCATCATTGCCTGCCACCGCCAAAGCGTTACTCCTCCAGCC
GGACGGTAATAAAGCACCAACCATGACATCCCTTCTGGGCGAACGACTCA
GAAGAGTTTCTCGCATCGCAAGAGCTCCGCACAGCCTACAAGTTACCGAA
AATCCAGAAGAAGGTGGAGCACCAATCGTACCACTAAGAGAATCCGGCGC
ATCGGAAGTGTCAGAAGTAAATCCGGGGGTTATGGTCATTCCGGAGTCGG
CCAGTCCCCGGGGATCGGCGGTGCATGGACAACACGCTAGCTTGGTCTTC
AGTGCTGAAGCCAGGGATTCGGACAGTACGCGGATATCGGAGGAAATGGT
GGAAGTGTTCCAAACCTCTTCGGCGAGAACCACATCCAATGAGCCCGCAG
GGGGCAATCTGCGCTTTGAAACCACTCCCGTGGCTGTAAGCGAAAGTATG
GTTGGCAATATAAACTTCTCCCCGAACGCCATCTACGATCAGAACAGGTA
TAGCAGCATGATGTCCAACGGGGATTACAATAATGGCAACAGGGGTGAGA
GTGAGAGGAGCGTGGGAGCCTGCCACCATGGTTGGGCGGCGCGACAACAA
CAAGTTGCCGCTGGACCTGCCGGCAGAGACACCCTGGGATTCGCCATCAG
TCTGGGCGCCGCTAATTTGGGCCAGAACCGATGCAGTCTGGGCGTTGCAT
GCGATGAGGACTGTGGCTATGGAACTGGCTGTGATTTTGGATGCGGTCAG
GCCCATGGCGTTGATCCCGGAAGCTTTCTAGGTCCGGGAACCATGGGAAC
TGGTCCATTAATATTGACAACGGGATCAGGAGGCCCACCTGTACAGAGCG
CCCTACGAGGAGCTCAAGGTGGCGGCTATAAGCAAGTTGGCGCCGGGCAG
CGGGGAACTTTTGGAACAGATTTCGGAAGTGAGCAGCTTAACTTCTTCAT
TACCTTCCTATTGGAGGTCCTCGGTGTTTTAGTTTTTTTTGCCATCTGCA
CGATAACATTTTGGATTACTCTGGGCTACCATGTTGTCCAGTTGCTGGTG
GACCTGAAGAACGCCGATCGCAACATTCAGGTGGCGGTGGCCATTGTGTT
CGGGCTGCTGCTCGTTGCGTTTGCCATATCGCAGGTGACCAACCTCAGTG
GTTCCTGCTGTCATTCACGGGATCGAGCCCGTTCCAGAACCAAAGGTGGT
GGCATTGGCTTCTTTCACAGATCCACCAAGCCAAAGACCAAGAGCTGTGC
ATCCAAAACCAAGACCTGTGCTCATAAGCCGAAGATTAAGAAGGCAGCCA
CTTGTGGACCCAGCCTGGGCTTTCACACGCACCGCAAAACGAGGTATACG
GATTGCGAGGGACGGGCAATTTTCTTGAGCTCGAGACGATATGCTATTCC
GACTGAGATGAAACAACCACCCACCATTGTGCTCTGGATGCGCGACACAC
TGGTTCGCATGTTGCAGTAAAAGCTTTCTAGACCAT
BS07966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1554 | CG4955-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1838 | CG4955-RA | 138..1691 | 17..1570 | 7770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17081584..17082650 | 17..1083 | 5335 | 100 | Plus |
| X | 23542271 | X | 17082723..17083209 | 1084..1570 | 2435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:03:21 has no hits.
BS07966.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:56 Download gff for
BS07966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:12 Download gff for
BS07966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 73..1632 | 7..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:16 Download gff for
BS07966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 79..1630 | 17..1568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:56 Download gff for
BS07966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 73..1632 | 7..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:11 Download gff for
BS07966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 138..1689 | 17..1568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:11 Download gff for
BS07966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17081584..17082650 | 17..1083 | 100 | -> | Plus |
| X | 17082723..17083207 | 1084..1568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:16 Download gff for
BS07966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16975617..16976683 | 17..1083 | 100 | -> | Plus |
| arm_X | 16976756..16977240 | 1084..1568 | 100 | | Plus |
BS07966.pep Sequence
Translation from 16 to 1569
> BS07966.pep
MERRRPRKSSRKYVCSKSNSSVGGGVEEDSGSSLPATAKALLLQPDGNKA
PTMTSLLGERLRRVSRIARAPHSLQVTENPEEGGAPIVPLRESGASEVSE
VNPGVMVIPESASPRGSAVHGQHASLVFSAEARDSDSTRISEEMVEVFQT
SSARTTSNEPAGGNLRFETTPVAVSESMVGNINFSPNAIYDQNRYSSMMS
NGDYNNGNRGESERSVGACHHGWAARQQQVAAGPAGRDTLGFAISLGAAN
LGQNRCSLGVACDEDCGYGTGCDFGCGQAHGVDPGSFLGPGTMGTGPLIL
TTGSGGPPVQSALRGAQGGGYKQVGAGQRGTFGTDFGSEQLNFFITFLLE
VLGVLVFFAICTITFWITLGYHVVQLLVDLKNADRNIQVAVAIVFGLLLV
AFAISQVTNLSGSCCHSRDRARSRTKGGGIGFFHRSTKPKTKSCASKTKT
CAHKPKIKKAATCGPSLGFHTHRKTRYTDCEGRAIFLSSRRYAIPTEMKQ
PPTIVLWMRDTLVRMLQ*
BS07966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-PA | 517 | CG4955-PA | 1..517 | 1..517 | 2695 | 100 | Plus |
