Clone Sequence Records
BS07973.3prime Sequence
870 bp (837 high quality bases) assembled on 2006-01-06
> BS07973.3prime
ATGGTCTAGAAAGCTTTTAATCGCCGAAGCCAGCGAACTCATCCACATAG
GTGGACATCAGATCAGAGCGACAGGAGACCTGAATGTTGGAGGCATTGGC
CTTGAGCCGAAGGTTCGCGTCGTTGGTGAGCAGGATCATGTGGGGAACCT
GCGCCTGCAGCTGCAGGCAGCAATTCAAAATGCTGTCATCCGGGCAGTCG
ATCTTGATCAGGTGATCCGCCTCCTCCAAAGCGGATTGAGCTTGTATTTG
AAAGCTTTCGTCGAACTTGGTGTTCAAAAAGCGTATTGCTCGCATGGCAA
TCACACGCTGCAGGCAGTCCGACTGGTACTTGCTCTTTAGCTTGTCCAGC
TCTTTGATTACTATGTACGGAAGGTACAGCATGCTGCCCACCGTGCCCGG
CAGCACCACATCGGTCAGTCTCTCCACGAACTTGTGGTTGTGTATGAGGA
CGTTGGTGTCCAGCACAAAGTACATGTAATCCTCAAGCCTTGGGGGCAGC
TCCTCGGCATCGGCCGCCTGCAGCATCAATATAGTGTCGTCCTCTTCCTT
AGCCTCATCCTGACCTTTCTGTGGCGCCTCCTCTTCAATGGACTCCGCCG
GCAGCATCAATAGAGTGTCGTCCCCTTTCTTAGCCTCATCCTGATCATTC
TGTGCCGCCTCCTCTTCAATAGACTCCTGCCATTCCATGGGCTCGACCTC
CATATCGCTGGCCGTCGAGCCATCAAATGCACTTGGATTTGTGATGTTGC
AGGCTTCTGGTTGTTTTTCTATCACCTCTTCGTTGATCTTGGCCACAATA
TTGTTGTTGCGCTCCTCATATAGCTGCTTCTGCTGCAGCGAAGCTCTTAA
CAGCATGTCGACTGATAACT
BS07973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-PB | 1215 | CG7206-RB | 375..1215 | 857..17 | 4205 | 100 | Minus |
CG7206-PA | 840 | CG7206-RA | 1..840 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RC | 1643 | CG7206-RC | 520..1360 | 857..17 | 4205 | 100 | Minus |
CG7206-RB | 1585 | CG7206-RB | 462..1302 | 857..17 | 4205 | 100 | Minus |
CG7206-RC | 1643 | CG7206-RC | 700..782 | 596..514 | 295 | 90.4 | Minus |
CG7206-RC | 1643 | CG7206-RC | 781..863 | 677..595 | 295 | 90.4 | Minus |
CG7206-RB | 1585 | CG7206-RB | 723..805 | 677..595 | 295 | 90.4 | Minus |
CG7206-RB | 1585 | CG7206-RB | 642..724 | 596..514 | 295 | 90.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18089295..18089911 | 241..857 | 3085 | 100 | Plus |
X | 23542271 | X | 18089008..18089233 | 17..242 | 1130 | 100 | Plus |
X | 23542271 | X | 18089568..18089650 | 595..677 | 295 | 90.4 | Plus |
X | 23542271 | X | 18089649..18089731 | 514..596 | 295 | 90.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:26:46 has no hits.
BS07973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:38 Download gff for
BS07973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 17..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:35 Download gff for
BS07973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 17..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:15 Download gff for
BS07973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 12..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:40 Download gff for
BS07973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 12..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:40 Download gff for
BS07973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18089006..18089231 | 12..240 | 98 | <- | Plus |
X | 18089295..18089915 | 241..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:15 Download gff for
BS07973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17983039..17983264 | 12..240 | 98 | <- | Plus |
arm_X | 17983328..17983948 | 241..862 | 99 | | Plus |
BS07973.5prime Sequence
869 bp (845 high quality bases) assembled on 2006-01-06
> BS07973.5prime
GAAGTTATCAGTCGACATGCTGTTAAGAGCTTCGCTGCAGCAGAAGCAGC
TATATGAGGAGCGCAACAACAATATTGTGGCCAAGATCAACGAAGAGGTG
ATAGAAAAACAACCAGAAGCCTGCAACATCACAAATCCAAGTGCATTTGA
TGGCTCGACGGCCAGCGATATGGAGGTCGAGCCCATGGAATGGCAGGAGT
CTATTGAAGAGGAGGCGGCACAGAATGATCAGGATGAGGCTAAGAAAGGG
GACGACACTCTATTGATGCTGCCGGCGGAGTCCATTGAAGAGGAGGCGCC
ACAGAAAGGTCAGGATGAGGCTAAGGAAGAGGACGACACTATATTGATGC
TGCAGGCGGCCGATGCCGAGGAGCTGCCCCCAAGGCTTGAGGATTACATG
TACTTTGTGCTGGACACCAACGTCCTCATACACAACCACAAGTTCGTGGA
GAGACTGACCGATGTGGTGCTGCCGGGCACGGTGGGCAGCATGCTGTACC
TTCCGTACATAGTAATCAAAGAGCTGGACAAGCTAAAGAGCAAGTACCAG
TCGGACTGCCTGCAGCGTGTGATTGCCATGCGAGCAATACGCTTTTTGAA
CACCAAGTTCGACGAAAGCTTTCAAATACAAGCTCAATCCGCTTTGGAGG
AGGCGGATCACCTGATCAAGATCGACTGCCCGGATGACAGCATTTTGAAT
TGCTGCCTGCAGCTGCAGGCGCAGGTTCCCCACATGATCCTGCTCACCAA
CGACGCGAACCTTCGGCTCAAGGCCAATGCCTCCAACATTCAGGTCTCCT
GTCGCTCTGATCTGATGTCCACCTATGTGGATGAGTTCGCTGGCTTCGGC
GATTAAAGCTTTCTAGACC
BS07973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-PB | 1215 | CG7206-RB | 375..1215 | 16..856 | 4205 | 100 | Plus |
CG7206-PA | 840 | CG7206-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RC | 1643 | CG7206-RC | 520..1360 | 16..856 | 4205 | 100 | Plus |
CG7206-RB | 1585 | CG7206-RB | 462..1302 | 16..856 | 4205 | 100 | Plus |
CG7206-RC | 1643 | CG7206-RC | 700..782 | 277..359 | 295 | 90.4 | Plus |
CG7206-RC | 1643 | CG7206-RC | 781..863 | 196..278 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 642..724 | 277..359 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 723..805 | 196..278 | 295 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18089295..18089911 | 632..16 | 3085 | 100 | Minus |
X | 23542271 | X | 18089008..18089233 | 856..631 | 1130 | 100 | Minus |
X | 23542271 | X | 18089568..18089650 | 278..196 | 295 | 90.4 | Minus |
X | 23542271 | X | 18089649..18089731 | 359..277 | 295 | 90.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:24:38 has no hits.
BS07973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:39 Download gff for
BS07973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 11..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:37 Download gff for
BS07973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 11..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:56 Download gff for
BS07973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 11..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:33 Download gff for
BS07973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 11..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:33 Download gff for
BS07973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18089006..18089231 | 633..860 | 99 | <- | Minus |
X | 18089295..18089915 | 11..632 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:56 Download gff for
BS07973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17983039..17983264 | 633..860 | 99 | <- | Minus |
arm_X | 17983328..17983948 | 11..632 | 99 | | Minus |
BS07973.complete Sequence
872 bp (872 high quality bases) assembled on 2006-01-10
> BS07973.complete
GAAGTTATCAGTCGACATGCTGTTAAGAGCTTCGCTGCAGCAGAAGCAGC
TATATGAGGAGCGCAACAACAATATTGTGGCCAAGATCAACGAAGAGGTG
ATAGAAAAACAACCAGAAGCCTGCAACATCACAAATCCAAGTGCATTTGA
TGGCTCGACGGCCAGCGATATGGAGGTCGAGCCCATGGAATGGCAGGAGT
CTATTGAAGAGGAGGCGGCACAGAATGATCAGGATGAGGCTAAGAAAGGG
GACGACACTCTATTGATGCTGCCGGCGGAGTCCATTGAAGAGGAGGCGCC
ACAGAAAGGTCAGGATGAGGCTAAGGAAGAGGACGACACTATATTGATGC
TGCAGGCGGCCGATGCCGAGGAGCTGCCCCCAAGGCTTGAGGATTACATG
TACTTTGTGCTGGACACCAACGTCCTCATACACAACCACAAGTTCGTGGA
GAGACTGACCGATGTGGTGCTGCCGGGCACGGTGGGCAGCATGCTGTACC
TTCCGTACATAGTAATCAAAGAGCTGGACAAGCTAAAGAGCAAGTACCAG
TCGGACTGCCTGCAGCGTGTGATTGCCATGCGAGCAATACGCTTTTTGAA
CACCAAGTTCGACGAAAGCTTTCAAATACAAGCTCAATCCGCTTTGGAGG
AGGCGGATCACCTGATCAAGATCGACTGCCCGGATGACAGCATTTTGAAT
TGCTGCCTGCAGCTGCAGGCGCAGGTTCCCCACATGATCCTGCTCACCAA
CGACGCGAACCTTCGGCTCAAGGCCAATGCCTCCAACATTCAGGTCTCCT
GTCGCTCTGATCTGATGTCCACCTATGTGGATGAGTTCGCTGGCTTCGGC
GATTAAAAGCTTTCTAGACCAT
BS07973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RB | 1215 | CG7206-PB | 375..1215 | 16..856 | 4205 | 100 | Plus |
CG7206-RB | 1215 | CG7206-PB | 555..637 | 277..359 | 295 | 90.4 | Plus |
CG7206-RB | 1215 | CG7206-PB | 636..718 | 196..278 | 295 | 90.4 | Plus |
CG7206-RC | 474 | CG7206-PC | 433..474 | 16..57 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RC | 1643 | CG7206-RC | 520..1360 | 16..856 | 4205 | 100 | Plus |
CG7206-RB | 1585 | CG7206-RB | 462..1302 | 16..856 | 4205 | 100 | Plus |
CG7206-RC | 1643 | CG7206-RC | 700..782 | 277..359 | 295 | 90.4 | Plus |
CG7206-RC | 1643 | CG7206-RC | 781..863 | 196..278 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 642..724 | 277..359 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 723..805 | 196..278 | 295 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18089295..18089911 | 632..16 | 3085 | 100 | Minus |
X | 23542271 | X | 18089008..18089233 | 856..631 | 1130 | 100 | Minus |
X | 23542271 | X | 18089568..18089650 | 278..196 | 295 | 90.4 | Minus |
X | 23542271 | X | 18089649..18089731 | 359..277 | 295 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:55:19 has no hits.
BS07973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:58 Download gff for
BS07973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 371..1215 | 11..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:15 Download gff for
BS07973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 427..1273 | 11..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:40 Download gff for
BS07973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 463..1300 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:59 Download gff for
BS07973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 427..1273 | 11..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:49 Download gff for
BS07973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 463..1300 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:49 Download gff for
BS07973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18089010..18089231 | 633..854 | 100 | <- | Minus |
X | 18089295..18089910 | 17..632 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:40 Download gff for
BS07973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17983043..17983264 | 633..854 | 100 | <- | Minus |
arm_X | 17983328..17983943 | 17..632 | 100 | | Minus |
BS07973.pep Sequence
Translation from 16 to 855
> BS07973.pep
MLLRASLQQKQLYEERNNNIVAKINEEVIEKQPEACNITNPSAFDGSTAS
DMEVEPMEWQESIEEEAAQNDQDEAKKGDDTLLMLPAESIEEEAPQKGQD
EAKEEDDTILMLQAADAEELPPRLEDYMYFVLDTNVLIHNHKFVERLTDV
VLPGTVGSMLYLPYIVIKELDKLKSKYQSDCLQRVIAMRAIRFLNTKFDE
SFQIQAQSALEEADHLIKIDCPDDSILNCCLQLQAQVPHMILLTNDANLR
LKANASNIQVSCRSDLMSTYVDEFAGFGD*
BS07973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-PB | 404 | CG7206-PB | 126..404 | 1..279 | 1424 | 100 | Plus |