Clone BS07976 Report

Search the DGRC for BS07976

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptigl-RB
Protein status:BS07976.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07976.3prime Sequence

399 bp (398 high quality bases) assembled on 2006-01-06

> BS07976.3prime
ATGGTCTAGAAAGCTTTTACTCGGGATTGGCATCCTTGCGGGTCTTGTGG
CCCCGGAACGAGGCCTGAATTTTGGTAGCAGCCTTGTTAAGCTCGGGATC
GGTTAAATCTATGTCCAACTCCTCGGCCACCTTCTTGGTTATCTCCTGAA
TGTCCTCGTCCTCGGGCGCATCCTTGTTCACCAGCTTGCGTGCCAAATGA
CCACGGAAAGTGGACTGAATCTTCAATGCAGCATGGCACAGATCCTTGTC
GTTGGGATCGAATTCAGCCTCTAGCTCGGCTTTGGTTGGCTCTGCGGATG
CGGCTGCCTCGGCGGCTGCTGCCGATGGAGCTGCTCCGGCGGCACTGCCG
TTGTTGGTCGCAGTTTTGGTTTCCGATTTTTTCATGTCGACTGATAACT

BS07976.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18285-PA 723 igl-RA 354..723 386..17 1850 100 Minus
CG18285-PB 369 igl-RB 1..369 385..17 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RC 2713 CG18285-RC 1034..1403 386..17 1850 100 Minus
igl-RB 1916 CG18285-RB 237..606 386..17 1850 100 Minus
igl-RA 2514 CG18285-RA 835..1204 386..17 1850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15188755..15188982 244..17 1140 100 Minus
2R 25286936 2R 15180568..15180710 386..244 715 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:38:58 has no hits.

BS07976.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:44 Download gff for BS07976.3prime
Subject Subject Range Query Range Percent Splice Strand
igl-PA 354..723 17..386 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:44 Download gff for BS07976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18285-PA 354..723 17..386 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:45 Download gff for BS07976.3prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1210 12..386 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:19:36 Download gff for BS07976.3prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1210 12..386 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:19:36 Download gff for BS07976.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15180568..15180710 244..386 100 -> Minus
2R 15188756..15188988 12..243 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:45 Download gff for BS07976.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11068073..11068215 244..386 100 -> Minus
arm_2R 11076261..11076493 12..243 99   Minus

BS07976.5prime Sequence

399 bp (398 high quality bases) assembled on 2006-01-06

> BS07976.5prime
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGTAAAAGCTTTCTAGACC

BS07976.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18285-PA 723 igl-RA 354..723 16..385 1850 100 Plus
CG18285-PB 369 igl-RB 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RC 2713 CG18285-RC 1034..1403 16..385 1850 100 Plus
igl-RB 1916 CG18285-RB 237..606 16..385 1850 100 Plus
igl-RA 2514 CG18285-RA 835..1204 16..385 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15188755..15188982 158..385 1140 100 Plus
2R 25286936 2R 15180568..15180710 16..158 715 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:52:22 has no hits.

BS07976.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:45 Download gff for BS07976.5prime
Subject Subject Range Query Range Percent Splice Strand
igl-PA 354..723 16..385 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:46 Download gff for BS07976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18285-PA 354..723 16..385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:53 Download gff for BS07976.5prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1210 16..390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:06 Download gff for BS07976.5prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1210 16..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:06 Download gff for BS07976.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15180568..15180710 16..158 100 -> Plus
2R 15188756..15188988 159..390 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:53 Download gff for BS07976.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11068073..11068215 16..158 100 -> Plus
arm_2R 11076261..11076493 159..390 99   Plus

BS07976.complete Sequence

401 bp (401 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636049

> BS07976.complete
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGTAAAAGCTTTCTAGACCA
T

BS07976.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RA 723 CG18285-PA 354..723 16..385 1850 100 Plus
igl-RC 369 CG18285-PC 1..369 17..385 1845 100 Plus
igl-RB 369 CG18285-PB 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RC 2713 CG18285-RC 1034..1403 16..385 1850 100 Plus
igl-RB 1916 CG18285-RB 237..606 16..385 1850 100 Plus
igl-RA 2514 CG18285-RA 835..1204 16..385 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15188755..15188982 158..385 1140 100 Plus
2R 25286936 2R 15180568..15180710 16..158 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:29 has no hits.

BS07976.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:41 Download gff for BS07976.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 354..723 16..385 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:52 Download gff for BS07976.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 833..1208 16..390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:55 Download gff for BS07976.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 836..1202 17..383 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:41 Download gff for BS07976.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 833..1208 16..390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:57 Download gff for BS07976.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 836..1202 17..383 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:57 Download gff for BS07976.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15180569..15180710 17..158 100 -> Plus
2R 15188756..15188980 159..383 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:55 Download gff for BS07976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11068074..11068215 17..158 100 -> Plus
arm_2R 11076261..11076485 159..383 100   Plus

BS07976.pep Sequence

Translation from 16 to 384

> BS07976.pep
MKKSETKTATNNGSAAGAAPSAAAAEAAASAEPTKAELEAEFDPNDKDLC
HAALKIQSTFRGHLARKLVNKDAPEDEDIQEITKKVAEELDIDLTDPELN
KAATKIQASFRGHKTRKDANPE*

BS07976.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
igl-PC 122 CG18285-PC 1..122 1..122 613 100 Plus
igl-PB 122 CG18285-PB 1..122 1..122 613 100 Plus
igl-PA 240 CG18285-PA 119..240 1..122 613 100 Plus