Clone Sequence Records
BS07976.3prime Sequence
399 bp (398 high quality bases) assembled on 2006-01-06
> BS07976.3prime
ATGGTCTAGAAAGCTTTTACTCGGGATTGGCATCCTTGCGGGTCTTGTGG
CCCCGGAACGAGGCCTGAATTTTGGTAGCAGCCTTGTTAAGCTCGGGATC
GGTTAAATCTATGTCCAACTCCTCGGCCACCTTCTTGGTTATCTCCTGAA
TGTCCTCGTCCTCGGGCGCATCCTTGTTCACCAGCTTGCGTGCCAAATGA
CCACGGAAAGTGGACTGAATCTTCAATGCAGCATGGCACAGATCCTTGTC
GTTGGGATCGAATTCAGCCTCTAGCTCGGCTTTGGTTGGCTCTGCGGATG
CGGCTGCCTCGGCGGCTGCTGCCGATGGAGCTGCTCCGGCGGCACTGCCG
TTGTTGGTCGCAGTTTTGGTTTCCGATTTTTTCATGTCGACTGATAACT
BS07976.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18285-PA | 723 | igl-RA | 354..723 | 386..17 | 1850 | 100 | Minus |
CG18285-PB | 369 | igl-RB | 1..369 | 385..17 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RC | 2713 | CG18285-RC | 1034..1403 | 386..17 | 1850 | 100 | Minus |
igl-RB | 1916 | CG18285-RB | 237..606 | 386..17 | 1850 | 100 | Minus |
igl-RA | 2514 | CG18285-RA | 835..1204 | 386..17 | 1850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15188755..15188982 | 244..17 | 1140 | 100 | Minus |
2R | 25286936 | 2R | 15180568..15180710 | 386..244 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:38:58 has no hits.
BS07976.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:44 Download gff for
BS07976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-PA | 354..723 | 17..386 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:44 Download gff for
BS07976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18285-PA | 354..723 | 17..386 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:45 Download gff for
BS07976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1210 | 12..386 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:19:36 Download gff for
BS07976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1210 | 12..386 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:19:36 Download gff for
BS07976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15180568..15180710 | 244..386 | 100 | -> | Minus |
2R | 15188756..15188988 | 12..243 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:45 Download gff for
BS07976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11068073..11068215 | 244..386 | 100 | -> | Minus |
arm_2R | 11076261..11076493 | 12..243 | 99 | | Minus |
BS07976.5prime Sequence
399 bp (398 high quality bases) assembled on 2006-01-06
> BS07976.5prime
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGTAAAAGCTTTCTAGACC
BS07976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18285-PA | 723 | igl-RA | 354..723 | 16..385 | 1850 | 100 | Plus |
CG18285-PB | 369 | igl-RB | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RC | 2713 | CG18285-RC | 1034..1403 | 16..385 | 1850 | 100 | Plus |
igl-RB | 1916 | CG18285-RB | 237..606 | 16..385 | 1850 | 100 | Plus |
igl-RA | 2514 | CG18285-RA | 835..1204 | 16..385 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15188755..15188982 | 158..385 | 1140 | 100 | Plus |
2R | 25286936 | 2R | 15180568..15180710 | 16..158 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:52:22 has no hits.
BS07976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:29:45 Download gff for
BS07976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-PA | 354..723 | 16..385 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:25:46 Download gff for
BS07976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18285-PA | 354..723 | 16..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:58:53 Download gff for
BS07976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1210 | 16..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:06 Download gff for
BS07976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1210 | 16..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:06 Download gff for
BS07976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15180568..15180710 | 16..158 | 100 | -> | Plus |
2R | 15188756..15188988 | 159..390 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:58:53 Download gff for
BS07976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11068073..11068215 | 16..158 | 100 | -> | Plus |
arm_2R | 11076261..11076493 | 159..390 | 99 | | Plus |
BS07976.complete Sequence
401 bp (401 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636049
> BS07976.complete
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGTAAAAGCTTTCTAGACCA
T
BS07976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RA | 723 | CG18285-PA | 354..723 | 16..385 | 1850 | 100 | Plus |
igl-RC | 369 | CG18285-PC | 1..369 | 17..385 | 1845 | 100 | Plus |
igl-RB | 369 | CG18285-PB | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RC | 2713 | CG18285-RC | 1034..1403 | 16..385 | 1850 | 100 | Plus |
igl-RB | 1916 | CG18285-RB | 237..606 | 16..385 | 1850 | 100 | Plus |
igl-RA | 2514 | CG18285-RA | 835..1204 | 16..385 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15188755..15188982 | 158..385 | 1140 | 100 | Plus |
2R | 25286936 | 2R | 15180568..15180710 | 16..158 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:29 has no hits.
BS07976.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:41 Download gff for
BS07976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 354..723 | 16..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:52 Download gff for
BS07976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 833..1208 | 16..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:55 Download gff for
BS07976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 836..1202 | 17..383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:41 Download gff for
BS07976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 833..1208 | 16..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:57 Download gff for
BS07976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 836..1202 | 17..383 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:57 Download gff for
BS07976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15180569..15180710 | 17..158 | 100 | -> | Plus |
2R | 15188756..15188980 | 159..383 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:55 Download gff for
BS07976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11068074..11068215 | 17..158 | 100 | -> | Plus |
arm_2R | 11076261..11076485 | 159..383 | 100 | | Plus |
BS07976.pep Sequence
Translation from 16 to 384
> BS07976.pep
MKKSETKTATNNGSAAGAAPSAAAAEAAASAEPTKAELEAEFDPNDKDLC
HAALKIQSTFRGHLARKLVNKDAPEDEDIQEITKKVAEELDIDLTDPELN
KAATKIQASFRGHKTRKDANPE*
BS07976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-PC | 122 | CG18285-PC | 1..122 | 1..122 | 613 | 100 | Plus |
igl-PB | 122 | CG18285-PB | 1..122 | 1..122 | 613 | 100 | Plus |
igl-PA | 240 | CG18285-PA | 119..240 | 1..122 | 613 | 100 | Plus |