Clone Sequence Records
BS07985.3prime Sequence
882 bp (830 high quality bases) assembled on 2006-01-06
> BS07985.3prime
ATGGTCTAGAAAGCTTTCAAAGGACGATGGCCTCCTCCTCCTGGTACTGT
TTGTTCTTGCGCCGCCGGTTGGACTTGATCTTGCTGAGCACACTGTACGC
CTGCTGGATTTCGATAAAGCGCTGGTGGGCCTGGGCCCGCAAGCCCTCGT
CCTTGACCTTGTCGGGATGGTACTCCTTGGAGAGCTTCCTGTACGCAGCG
GTGATCTCTGCCTGCGAAGCGGTGGCACTTACGCCCAAGACCTTGTACGA
ATTTCGTTCGCCATCCACATCCATGCTTTCGAACACCTCCTTCCAGGTCT
CGTACCAGCCGTGATGCTGCGCATAGTTATAGGTGTCCAGCAGGGCTTGC
TTCAGATCTGTCCACCAGGCGGAGGCCAAGAAGTTATGGATGGCCTCGTG
AATGGGCACCTCGCCGCCGTCCTCGTCCGAAATGGTGCCGTTGAAATACA
GGAAGCTGCCCCAGAAGGCGCAGTAGATGATCACGGCGGTGGTTAGCTTA
AAGGTCCTTTCACCGGGGCTTCCCCTGCGCGGCGGAGTCCTGCGCCACTG
CTTGGACAAGCCGTCGAAGGTCAGTGCCGCCACGAGACCAGTGAGCAGCA
GGGAGTAGGTCTCGTCATATATCAAATACCTGGCCGGATACGCCAGATAG
GCGGCCACCAGGCAGTGCCACCATACACCCTGCTCCCGGCCAATGTTGCC
CACCAGCCAAACGCCCAGCGAAACAAACAGCGGAATCGTCCAGTGTAGGA
AGCTCAGATCCCAGCCACCGACCAGGGTCTCCGGAATGGCCATGGAGCAC
ACCTGGCCGAACAGATGGCCGATCATCACCTGGCCCACGAATCTCTTCGA
GGAGTACGGCGGGTTCGGATACGCCTGCAGCT
BS07985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9089-PA | 1221 | wus-RA | 356..1221 | 882..17 | 4305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wus-RB | 2118 | CG9089-RB | 744..1609 | 882..17 | 4315 | 99.9 | Minus |
| wus-RA | 1866 | CG9089-RA | 744..1609 | 882..17 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16938753..16939618 | 17..882 | 4315 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:30:29 has no hits.
BS07985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:03 Download gff for
BS07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-PA | 356..1221 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:11 Download gff for
BS07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9089-PA | 356..1221 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:31 Download gff for
BS07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 744..1611 | 13..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:50 Download gff for
BS07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 744..1611 | 13..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:50 Download gff for
BS07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16938751..16939618 | 13..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:31 Download gff for
BS07985.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16832784..16833651 | 13..882 | 99 | | Plus |
BS07985.5prime Sequence
885 bp (711 high quality bases) assembled on 2006-01-06
> BS07985.5prime
GAAGTTATCAGTCGACATGGGCACCACGCAGACAGTATCTCCAGTGGCTG
GAAAGGATAAGACCAACGATACCTCCAAAGGATCTCCCTCGAAGGCTAAG
TCCAATGGCCACGCGCAAGGCAAGACCAAAAGCAAGGAGATGAACGCTCT
GCCGCCCCAGAAATCGGTGGTCATTGCCTATCTATGCTGGCTTTTCGGCG
GAATCTTCGGCCTGCATCATCTGTACTTGCACCGTGACCGCCACGCCTTC
ATTTGGTGGTGCACCCTGGGTGGCTACATGGGCATTGGCTGGATGGGCGA
GCTCTTCCTGATACCCGAATATGTACGGGATGCCAACGAGGATCCCAAGT
TCGTCAAGATGTTCGTGGCCAAGCTGCAGGCGTATCCGAAACCGCCGTAC
TCCTCGAAGAGATTCGTGGGCCAGGTGATGATCGGCCATCTGTTCGGCCA
GGTGTGCTCCATGGCCATTCCGGAGACCCTGGTCGGTGGCTGGGATCTGA
GCTTCCTACACTGGACGATTCCGCTGTTTGTTTCGCTGGGCGTTTGGCTG
GTGGGCAACATTGGCCGGGAGCAGGGTGTATGGTGGCACTGCCTGGTGGC
CGCCTATCTGGCGTATCCGGCCAGGTATTTGATATATGACGAGACCTACT
CCCTGCTGCTCACTGGTCTCGTGGCGGCACTGACCTTCGACGGCTTGTCC
AAGCAGTGGCGCAGGACTCCGCCGCGCAGGGGAAGCCCCGGTGAAAGGAC
CTTTAAGCTAACCACCGCCGTGATCATCTACTGCGCCTTCTGGGGCAGCT
TCCTGTATTTCAACGGCACCATTTCGGACGAGGACGGCGGCGAGGTGCCC
ATCACGAGGCCATCCCATACTTCTTGGGCTCCGCC
BS07985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9089-PA | 1221 | wus-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wus-RB | 2118 | CG9089-RB | 388..1258 | 16..885 | 4270 | 99.5 | Plus |
| wus-RA | 1866 | CG9089-RA | 388..1258 | 16..885 | 4270 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16939104..16939974 | 885..16 | 4245 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:24:08 has no hits.
BS07985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:04 Download gff for
BS07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:12 Download gff for
BS07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9089-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:49 Download gff for
BS07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 385..1258 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:25 Download gff for
BS07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 385..1258 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:25 Download gff for
BS07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16939104..16939977 | 9..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:49 Download gff for
BS07985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16833137..16834010 | 9..885 | 99 | | Minus |
BS07985.complete Sequence
1253 bp (1253 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636050
> BS07985.complete
GAAGTTATCAGTCGACATGGGCACCACGCAGACAGTATCTCCAGTGGCTG
GAAAGGATAAGACCAACGATACCTCCAAAGGATCTCCCTCGAAGGCTAAG
TCCAATGGCCACGCGCAAGGCAAGACCAAAAGCAAGGAGATGAACGCTCT
GCCGCCCCAGAAATCGGTGGTCATTGCCTATCTATGCTGGCTTTTCGGCG
GAATCTTCGGCCTGCATCATCTGTACTTGCACCGTGACCGCCACGCCTTC
ATTTGGTGGTGCACCCTGGGTGGCTACATGGGCATTGGCTGGATGGGCGA
GCTCTTCCTGATACCCGAATATGTACGGGATGCCAACGAGGATCCCAAGT
TCGTCAAGATGTTCGTGGCCAAGCTGCAGGCGTATCCGAAACCGCCGTAC
TCCTCGAAGAGATTCGTGGGCCAGGTGATGATCGGCCATCTGTTCGGCCA
GGTGTGCTCCATGGCCATTCCGGAGACCCTGGTCGGTGGCTGGGATCTGA
GCTTCCTACACTGGACGATTCCGCTGTTTGTTTCGCTGGGCGTTTGGCTG
GTGGGCAACATTGGCCGGGAGCAGGGTGTATGGTGGCACTGCCTGGTGGC
CGCCTATCTGGCGTATCCGGCCAGGTATTTGATATATGACGAGACCTACT
CCCTGCTGCTCACTGGTCTCGTGGCGGCACTGACCTTCGACGGCTTGTCC
AAGCAGTGGCGCAGGACTCCGCCGCGCAGGGGAAGCCCCGGTGAAAGGAC
CTTTAAGCTAACCACCGCCGTGATCATCTACTGCGCCTTCTGGGGCAGCT
TCCTGTATTTCAACGGCACCATTTCGGACGAGGACGGCGGCGAGGTGCCC
ATTCACGAGGCCATCCATAACTTCTTGGCCTCCGCCTGGTGGACAGATCT
GAAGCAAGCCCTGCTGGACACCTATAACTATGCGCAGCATCACGGCTGGT
ACGAGACCTGGAAGGAGGTGTTCGAAAGCATGGATGTGGATGGCGAACGA
AATTCGTACAAGGTCTTGGGCGTAAGTGCCACCGCTTCGCAGGCAGAGAT
CACCGCTGCGTACAGGAAGCTCTCCAAGGAGTACCATCCCGACAAGGTCA
AGGACGAGGGCTTGCGGGCCCAGGCCCACCAGCGCTTTATCGAAATCCAG
CAGGCGTACAGTGTGCTCAGCAAGATCAAGTCCAACCGGCGGCGCAAGAA
CAAACAGTACCAGGAGGAGGAGGCCATCGTCCTTTGAAAGCTTTCTAGAC
CAT
BS07985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wus-RB | 1221 | CG9089-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| wus-RA | 1221 | CG9089-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wus-RB | 2118 | CG9089-RB | 388..1609 | 16..1237 | 6110 | 100 | Plus |
| wus-RA | 1866 | CG9089-RA | 388..1609 | 16..1237 | 6110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16938753..16939974 | 1237..16 | 6110 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:36:46 has no hits.
BS07985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:00 Download gff for
BS07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 1..1221 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:17 Download gff for
BS07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 338..1564 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:38 Download gff for
BS07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 389..1608 | 17..1236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:00 Download gff for
BS07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 338..1564 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:35 Download gff for
BS07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wus-RA | 389..1608 | 17..1236 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:35 Download gff for
BS07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16938754..16939973 | 17..1236 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:38 Download gff for
BS07985.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16832787..16834006 | 17..1236 | 100 | | Minus |
BS07985.pep Sequence
Translation from 16 to 1236
> BS07985.pep
MGTTQTVSPVAGKDKTNDTSKGSPSKAKSNGHAQGKTKSKEMNALPPQKS
VVIAYLCWLFGGIFGLHHLYLHRDRHAFIWWCTLGGYMGIGWMGELFLIP
EYVRDANEDPKFVKMFVAKLQAYPKPPYSSKRFVGQVMIGHLFGQVCSMA
IPETLVGGWDLSFLHWTIPLFVSLGVWLVGNIGREQGVWWHCLVAAYLAY
PARYLIYDETYSLLLTGLVAALTFDGLSKQWRRTPPRRGSPGERTFKLTT
AVIIYCAFWGSFLYFNGTISDEDGGEVPIHEAIHNFLASAWWTDLKQALL
DTYNYAQHHGWYETWKEVFESMDVDGERNSYKVLGVSATASQAEITAAYR
KLSKEYHPDKVKDEGLRAQAHQRFIEIQQAYSVLSKIKSNRRRKNKQYQE
EEAIVL*
BS07985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wus-PB | 406 | CG9089-PB | 1..406 | 1..406 | 2196 | 100 | Plus |
| wus-PA | 406 | CG9089-PA | 1..406 | 1..406 | 2196 | 100 | Plus |
