Clone BS07986 Report

Search the DGRC for BS07986

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG9300-RA
Protein status:BS07986.pep: full length peptide match
Sequenced Size:2054

Clone Sequence Records

BS07986.3prime Sequence

957 bp (900 high quality bases) assembled on 2006-01-06

> BS07986.3prime
ATGGTCTAGAAAGCTTCTAGTAGAGCACGACCTCCTCAATCCCATACCAA
TTTGTAGAGTACATCGGTTTCACCTGACGTTTCTCCACAATATTTGTGAG
CAGCGGCAGCAAATTGGCTAAATCGAATAAACTTTCTTCGTAGAAGGAGA
GGAAAGTGGCCCATTCGGAGAGAGTCTCGAGCAATGCCTCGTCCTTGGAA
ATAATCAGCAGGGTGAAATGGGAGGTCAAGATGCAGCCAAACCACTGGAT
GGCCTGTACTTCCGTTTGAATTGGCGAGCAATTCAGGCTGGGTCGTTCCT
CCAACTGGACATTGGGGTCATTGACCAGATCGAACAGGTGGCTCATCAAG
TGCTGGACATGGGAGAGCTCCAGTCGGTAACGCAGATGCTCCTCGATGCC
GGTGGCATCAAATCTGCAGGCTAGCACTGCATTTAGCAGTTCCTTGTTGG
AGTAACTCTTAGCCGTTGGTACAGCGTTGGAATCGCCATTAATAGCATGA
CGAGGCTTGCATTTATCTAGAGCATAGCGCAGTGACCAGGCCAGCATTCT
CTCCGATATGTTGCTGTAGCGCCTAAGACACATCAGGACATGCTCTGTGT
TGTCGGTCTTGATGAAAAGTGTGAGAATCCTTTCGATGATTTCCTCTTCC
CCAGCTCCACTTCTCTCCAGCTGCCGGACTAAAGCCTGCACAGCTGTATT
ATTCGGCCCCTTGTCAAAGAAGTTCGTCATTAGAGTGACACTCACGTCCT
CCAGCCCATTCTCGCAAATGGTCGCCTCTCCATGAACATGCTGTTTGATA
ATTTCGTCGATCTCTTGATCCACTACCTCGGGAGGATCGTAAGCCAACTC
CCGGCCATCAGCTTTTTGGTAGTCCAAGTTGGGCATCTGCTTATTTAACT
GGGATTTCACAGCTCTATAATTTTAAGGTTTCGTACTACCATCAAACTTA
ATAAGCG

BS07986.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 2022 CG9300-RA 1082..2022 957..17 4630 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2156 CG9300-RA 1138..2080 957..15 4670 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19553749..19554691 957..15 4670 99.7 Minus
Blast to na_te.dros performed on 2015-02-03 12:35:01 has no hits.

BS07986.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:06 Download gff for BS07986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1082..2022 17..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:13 Download gff for BS07986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1082..2022 17..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:51:36 Download gff for BS07986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1138..2080 15..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:42:44 Download gff for BS07986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1138..2080 15..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:42:44 Download gff for BS07986.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19553749..19554691 15..957 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:51:36 Download gff for BS07986.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19546849..19547791 15..957 99   Minus

BS07986.5prime Sequence

942 bp (840 high quality bases) assembled on 2006-01-06

> BS07986.5prime
GAAGTTATCAGTCGACATGTCCAAATTCCTGTCCTACTACAACCTGTTTC
CCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTGCAGACAGGGAAAAT
GGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTGGTTGTTTTGAACAT
CAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCCGGAGAAGCTTTCCT
CCAAGGTTATATACGATCCCAGCAGCCAGAAGTATGTGGGCGTCTTTGGA
AATCACGCGCTGCGTCTTTGGGATGTGGACACCAGTGATGTGTCCAAGTG
CAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGTGGTGGCAACCGAAC
AGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCCAAACCCTTTCCCAG
GCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACGGCTGAGCAACTGGC
CCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGTCCACGCATTGGCCC
AGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAAAGGCCACCGGCGAA
ATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGACCGGCGGAAGTACCT
CATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGCTGTCGTCGAGGGCG
ATGCAGATCCTCAGTTGCTGACCATTTGGTCTGATAAACGCATCTTCATG
CTTAACCTGGCGGAGGCCACATCAGAGCGATCCCCTGGACAATTCGTATC
TATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTATCCGTGCACGGAGTCT
CACGAAACTTTGCTGCCATCTACGGCGCCAACTATGGGCAGGAAGGCGCC
TCTCTGTTGGTTATAACACTCAGTTTAAGGTGGTGAACGCGAAGCAGTAC
TTTAAAGTGTACCTGGACTTCTCTCGCCTTTGGGCCGGGAAT

BS07986.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 2022 CG9300-RA 1..846 17..862 4230 100 Plus
CG9300-PA 2022 CG9300-RA 846..927 861..942 410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2156 CG9300-RA 57..983 17..942 4610 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19552883..19553249 312..678 1835 100 Plus
3L 28110227 3L 19553329..19553594 678..942 1280 99.6 Plus
3L 28110227 3L 19552666..19552830 149..313 825 100 Plus
3L 28110227 3L 19552476..19552607 17..148 660 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:04:28 has no hits.

BS07986.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:07 Download gff for BS07986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1..927 17..942 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:15 Download gff for BS07986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1..927 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:28:30 Download gff for BS07986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..983 17..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:31 Download gff for BS07986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..983 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:31 Download gff for BS07986.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19553329..19553594 678..942 99   Plus
3L 19552476..19552607 17..148 100 -> Plus
3L 19552666..19552830 149..313 100 -> Plus
3L 19552885..19553248 314..677 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:28:30 Download gff for BS07986.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19545576..19545707 17..148 100 -> Plus
arm_3L 19545766..19545930 149..313 100 -> Plus
arm_3L 19545985..19546348 314..677 100 -> Plus
arm_3L 19546429..19546694 678..942 99   Plus

BS07986.complete Sequence

2054 bp assembled on 2010-05-10

GenBank Submission: KX801584

> BS07986.complete
GAAGTTATCAGTCGACATGTCCAAATTCCTGTCCTACTACAACCTGTTTC
CCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTGCAGACAGGGAAAAT
GGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTGGTTGTTTTGAACAT
CAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCCGGAGAAGCTTTCCT
CCAAGGTTATATACGATCCCAGCAGCCAGAAGTATGTGGGCGTCTTTGGA
AATCACGCGCTGCGTCTTTGGGATGTGGACACCAGTGATGTGTCCAAGTG
CAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGTGGTGGCAACCGAAC
AGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCCAAACCCTTTCCCAG
GCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACGGCTGAGCAACTGGC
CCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGTCCACGCATTGGCCC
AGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAAAGGCCACCGGCGAA
ATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGACCGGCGGAAGTACCT
CATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGCTGTCGTCGAGGGCG
ATGCAGATCCTCAGTTGCTGACCATTTGGTCTGATAAACGCATCTTCATG
CTTAACCTGGCGGAGGCCACATCAGAGCGATCCCCTGGACAATTCGTATC
TATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTATCCGTGCACGGAGTCT
CACGAAACTTTGCTGCCATCTACGGCGCCAACTATGGGCAGGAAGGCGCC
TCTCTGTTGGTTTATAACACTCAGTTTAAGGTGGTGAACGCGAAGCAGTA
CTTTAAAGTGTACCTGGACTTCTCTCGCCTTTGGGCCGGGAATGAGCACA
TCCTTTTGGCCATGGGGCATAATATAGCGGCGGTCCGTTACCGAATGAAC
CGGGAGGTGCTGGTGGACATGTTGGGCTCTCAGTTTAGTGATACTCACCT
CTCGCCTATTGAATTGGATCACATAAACGAGGAGGAGTATCTGGAGTCGC
TTATTAAGTTTGATGGTAGTACGAAACCCTTAAATTATAGAGCTGTGAAA
TCCCAGTTAAATAAGCAGATGCCCAACTTGGACTACCAAAAAGCTGATGG
CCGGGAGTTGGCTTACGATCCTCCCGAGGTAGTGGATCAAGAGATCGACG
AAATTATCAAACAGCATGTTCATGGAGAGGCGACCATTTGCGAGAATGGG
CTGGAGGACGTGAGTGTCACTCTAATGACGAACTTCTTTGACAAGGGGCC
GAATAATACAGCTGTGCAGGCTTTAGTCCGGCAGCTGGAGAGAAGTGGAG
CTGGGGAAGAGGAAATCATCGAAAGGATTCTCACACTTTTCATCAAGACC
GACAACACAGAGCATGTCCTGATGTGTCTTAGGCGCTACAGCAACATATC
GGAGAGAATGCTGGCCTGGTCACTGCGCTATGCTCTAGATAAATGCAAGC
CTCGTCATGCTATTAATGGCGATTCCAACGCTGTACCAACGGCTAAGAGT
TACTCCAACAAGGAACTGCTAAATGCAGTGCTAGCCTGCAGATTTGATGC
CACCGGCATCGAGGAGCATCTGCGTTACCGACTGGAGCTCTCCCATGTCC
AGCACTTGATGAGCCACCTGTTCGATCTGGTCAATGACCCCAATGTCCAG
TTGGAGGAACGACCCAGCCTGAATTGCTCGCCAATTCAAACGGAAGTACA
GGCCATCCAGTGGTTTGGCTGCATCTTGACCTCCCATTTCACCCTGCTGA
TTATTTCCAAGGACGAGGCATTGCTCGAGACTCTCTCCGAATGGGCCACT
TTCCTCTCCTTCTACGAAGAAAGTTTATTCGATTTAGCCAATTTGCTGCC
GCTGCTCACAAATATTGTGGAGAAACGTCAGGTGAAACCGATGTACTCTA
CAAATTGGTATGGGATTGAGGAGGTCGTGCTCTACTAGAAGCTTTCTAGA
CCAT

BS07986.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2022 CG9300-PA 1..2022 17..2038 10095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2156 CG9300-RA 57..2080 17..2040 10105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19553329..19554691 678..2040 6800 99.9 Plus
3L 28110227 3L 19552883..19553249 312..678 1835 100 Plus
3L 28110227 3L 19552666..19552830 149..313 825 100 Plus
3L 28110227 3L 19552476..19552607 17..148 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:43:57 has no hits.

BS07986.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:07 Download gff for BS07986.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 55..2076 17..2038 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:05 Download gff for BS07986.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..2078 17..2038 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:55 Download gff for BS07986.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..2078 17..2038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:55 Download gff for BS07986.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19552666..19552830 149..313 100 -> Plus
3L 19552476..19552607 17..148 100 -> Plus
3L 19552885..19553248 314..677 100 -> Plus
3L 19553329..19554689 678..2038 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:05 Download gff for BS07986.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19545576..19545707 17..148 100 -> Plus
arm_3L 19545766..19545930 149..313 100 -> Plus
arm_3L 19545985..19546348 314..677 100 -> Plus
arm_3L 19546429..19547789 678..2038 99   Plus

BS07986.pep Sequence

Translation from 16 to 2037

> BS07986.pep
MSKFLSYYNLFPIPDPKEFLGLAADRENGNVVTTLARNVVVVLNISTQKQ
LLSWSLPEKLSSKVIYDPSSQKYVGVFGNHALRLWDVDTSDVSKCKKLKF
QKSIAHVVATEQEALILYSDGECQTLSQALASRKDQKEDTAEQLALAASK
VISKPTVHALAQGQQVLTYFEETKATGEMQLIRLSLDTADRRKYLIKREE
VRLTGYAVVEGDADPQLLTIWSDKRIFMLNLAEATSERSPGQFVSMLAEL
NVESKLSVHGVSRNFAAIYGANYGQEGASLLVYNTQFKVVNAKQYFKVYL
DFSRLWAGNEHILLAMGHNIAAVRYRMNREVLVDMLGSQFSDTHLSPIEL
DHINEEEYLESLIKFDGSTKPLNYRAVKSQLNKQMPNLDYQKADGRELAY
DPPEVVDQEIDEIIKQHVHGEATICENGLEDVSVTLMTNFFDKGPNNTAV
QALVRQLERSGAGEEEIIERILTLFIKTDNTEHVLMCLRRYSNISERMLA
WSLRYALDKCKPRHAINGDSNAVPTAKSYSNKELLNAVLACRFDATGIEE
HLRYRLELSHVQHLMSHLFDLVNDPNVQLEERPSLNCSPIQTEVQAIQWF
GCILTSHFTLLIISKDEALLETLSEWATFLSFYEESLFDLANLLPLLTNI
VEKRQVKPMYSTNWYGIEEVVLY*

BS07986.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 673 CG9300-PA 1..673 1..673 3442 100 Plus