Clone BS07987 Report

Search the DGRC for BS07987

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:79
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4e2-RA
Protein status:BS07987.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07987.3prime Sequence

964 bp (761 high quality bases) assembled on 2006-01-06

> BS07987.3prime
ATGGTCTAGAAAGCTTTTAGTGCCTTTCCTTCAGCCGAATGTATAGACCA
TTTTCGGATTTCAGGGTCAGCACAGCGGAAAGAATAGGGTCGTATTTGTG
ACGGTATGGATCGCGCTTCTTCCTCTCGGCATCAGGGAGTCCAATAGTGG
TGCTTATATAGCCATCCTTAGAGACGAGCTCATCCAGAGCAGGAAGCACC
TCGAAGTTCCTAATGATCTTGGATACCACAGTCTTAATCTCCAGCAGGGC
GAACTTCTGACCAATGCAGTTTCGGGGTCCAGCGCTGAAGGGTACATACT
CAAAAGGTCCTGGTTTCTCCAGCTCAAAGCGCTCAGGTCGGAACTTGTGG
GGATCTTTGAACACCTTTTCGTTATAACCCAGCATCACGAGACCCAGGTT
CAGTGTGGTGCCCTTGGGTACGAGATCCCCATCTATAACATAGTCTTTCT
CCGTAAATCGTCCAATGAAAGGCACGCTGGGATAAACACGCTGGGCCTCC
TTGATAAAGAGATCCAAGTACTTCATTTGGGATATTTCCTGGAAGGTGGC
ATCGCGACCCAGTTCGGAATTACCCATTACTTCGCGTTGCTCCTTAAATA
GTTTGCGCTGTTCATCTTGATGTCTAGAAAGCAAATAGACAGCGAACGAC
ACTCCAGAAGTGGTAGTATCATGTCCTTCAAACATAAATGTGGAGACCTC
TTCGTACAGTTCCTTGGAGTTCAGGGGACGACCATCAATAGTGGAGGACA
GCAGAGTGTCTAANAAGGCCATTTTCTTGCGAGTGAACTCATCTCCCGCG
TTGGTCGAAACTGCACCCGATTTGTGGGCTTNCATGCGCTTAGCGATGAT
CTCGTTGGTAAAGTCCTGCAGTGTTTTTAGAGTCCTGCTATAGGGCGGGT
AGTCGGGAAGCAAACGATACAGCAGTTCATTGCGCTTCAGCGGGTGGAAA
GCTCTCATGTTGAT

BS07987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2060-PA 1581 Cyp4e2-RA 634..1581 964..17 4552 99.1 Minus
CG2062-PA 1596 Cyp4e1-RA 1279..1448 319..150 350 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e2-RB 1880 CG2060-RB 791..1740 964..15 4638 99.2 Minus
Cyp4e2-RA 1783 CG2060-RA 694..1643 964..15 4638 99.2 Minus
Cyp4e1-RA 1772 CG2062-RA 773..1504 877..146 1228 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8446601..8447024 438..15 2120 100 Minus
2R 25286936 2R 8445955..8446311 964..608 1673 97.8 Minus
2R 25286936 2R 8446370..8446546 609..433 885 100 Minus
2R 25286936 2R 8449188..8449477 435..146 595 80.3 Minus
2R 25286936 2R 8448714..8448896 790..608 364 79.8 Minus
2L 23513712 2L 9748021..9748416 23..418 315 72 Plus
2R 25286936 2R 8448965..8449128 604..441 310 79.3 Minus
2L 23513712 2L 9748729..9748888 619..778 279 78.1 Plus
2L 23513712 2L 9748513..9748600 457..544 200 81.8 Plus
Blast to na_te.dros performed on 2015-02-11 16:41:24 has no hits.

BS07987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:08 Download gff for BS07987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2060-PA 634..1581 17..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:16 Download gff for BS07987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2060-PA 634..1581 17..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:44:47 Download gff for BS07987.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 694..1647 9..964 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:05 Download gff for BS07987.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 694..1647 9..964 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:05 Download gff for BS07987.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8445955..8446311 608..964 97 -> Minus
2R 8446372..8446546 433..607 100 -> Minus
2R 8446607..8447028 9..432 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:44:47 Download gff for BS07987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4333460..4333816 608..964 97 -> Minus
arm_2R 4333877..4334051 433..607 100 -> Minus
arm_2R 4334112..4334533 9..432 99   Minus

BS07987.5prime Sequence

916 bp (814 high quality bases) assembled on 2006-01-06

> BS07987.5prime
GAAGTTATCAGTCGACATGTGGTTCGTGTTGTATATTTTTCTGGCCCTAC
CACTGCTGCTGGTTGCATATCTGGAGTTGAGCACATTCCGCCGGAGAAGA
GTGCTTAACAAGTTCAACGGCCCCCGCGGCCTGCCGCTGATGGGAAACGC
TCATCAAATGGGCAAGAATCCGTCAGAAATACTCGACACGGTTTTCTCCT
GGTGGCATCAGTATGGAAAAGACAACTTCGTCTTTTGGATTGGAACGTAT
TCTAATGTATTGGTCACCAGCTCCAAGTACCTTGAATTCATACTCAGCAG
TCAGACGCTGATCACAAAGTCCGACATTTATCAACTAACACACCCTTGGC
TGGGATTAGGTCTCCTCACCAGTACTGGCAGCAAATGGCATAAACACCGC
AAGATGATCACCCCAGCATTCCACTTCAACATCCTGCAGGACTTCCACGA
GGTGATGAACGAGAACTCCACCAAGTTTATCAAGCACTTAAAGACAGTTG
CTGCCGGGGACAATATATTCGACTTCCAAGAACAGGCCCACTATTTGACC
CTGGATGTCATTTGCGACACAGCGATGGGTGTGTCCATCAATGCCATGGA
AAACCGCAGCTCTTCCATTGTGCAGGCCTTCAAAGACATGTGCTACAACA
TCAACATGAGAGCCTTCCACCCGCTGAAGCGCAATGAACTGCTGTATCGT
TTGGCTCCGGACTACCCGGCCTATAGCAGGACTCTAAAAACACTGCAGGA
CTTTACCAACGAGATCATCGCTAAGCGCATTGAAGCCCACAAATCGGGTG
CAGTTTCGACCAACGCGGGAGATGAGTTCACTCGCAAGAAAATGGCCTTT
TTAGACACTCTGCTGTCCTCCACTATTGATGGTCGTCCCCTGAACTCCAA
GGACTGTACGAAGAGG

BS07987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2060-PA 1581 Cyp4e2-RA 1..887 17..903 4435 100 Plus
CG2062-PA 1596 Cyp4e1-RA 325..461 341..477 460 93.4 Plus
CG4105-PA 1581 Cyp4e3-RA 367..464 383..480 390 95.9 Plus
CG2062-PA 1596 Cyp4e1-RA 526..590 542..606 225 93.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e2-RB 1880 CG2060-RB 158..1058 17..916 4480 99.9 Plus
Cyp4e2-RA 1783 CG2060-RA 61..961 17..916 4480 99.9 Plus
Cyp4e1-RA 1772 CG2062-RA 167..929 131..893 1195 77.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8445534..8445883 287..636 1750 100 Plus
2R 25286936 2R 8445942..8446222 637..916 1355 99.6 Plus
2R 25286936 2R 8448106..8448452 290..636 940 84.7 Plus
2R 25286936 2R 8444771..8444930 17..176 800 100 Plus
2L 23513712 2L 9749150..9749427 636..359 595 80.9 Minus
2R 25286936 2R 8445356..8445467 175..286 560 100 Plus
2R 25286936 2R 8448533..8448783 643..893 190 71.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:31:39 has no hits.

BS07987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:09 Download gff for BS07987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2060-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:18 Download gff for BS07987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2060-PA 1..901 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:56 Download gff for BS07987.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 55..961 12..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:08 Download gff for BS07987.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 55..961 12..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:08 Download gff for BS07987.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8444765..8444930 12..176 98 -> Plus
2R 8445358..8445467 177..286 100 -> Plus
2R 8445534..8445883 287..636 100 -> Plus
2R 8445942..8446222 637..916 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:56 Download gff for BS07987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4332270..4332435 12..176 98 -> Plus
arm_2R 4332863..4332972 177..286 100 -> Plus
arm_2R 4333039..4333388 287..636 100 -> Plus
arm_2R 4333447..4333727 637..916 99   Plus

BS07987.complete Sequence

1613 bp (1613 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636051

> BS07987.complete
GAAGTTATCAGTCGACATGTGGTTCGTGTTGTATATTTTTCTGGCCCTAC
CACTGCTGCTGGTTGCATATCTGGAGTTGAGCACATTCCGCCGGAGAAGA
GTGCTTAACAAGTTCAACGGCCCCCGCGGCCTGCCGCTGATGGGAAACGC
TCATCAAATGGGCAAGAATCCGTCAGAAATACTCGACACGGTTTTCTCCT
GGTGGCATCAGTATGGAAAAGACAACTTCGTCTTTTGGATTGGAACGTAT
TCTAATGTATTGGTCACCAGCTCCAAGTACCTTGAATTCATACTCAGCAG
TCAGACGCTGATCACAAAGTCCGACATTTATCAACTAACACACCCTTGGC
TGGGATTAGGTCTCCTCACCAGTACTGGCAGCAAATGGCATAAACACCGC
AAGATGATCACCCCAGCATTCCACTTCAACATCCTGCAGGACTTCCACGA
GGTGATGAACGAGAACTCCACCAAGTTTATCAAGCACTTAAAGACAGTTG
CTGCCGGGGACAATATATTCGACTTCCAAGAACAGGCCCACTATTTGACC
CTGGATGTCATTTGCGACACAGCGATGGGTGTGTCCATCAATGCCATGGA
AAACCGCAGCTCTTCCATTGTGCAGGCCTTCAAAGACATGTGCTACAACA
TCAACATGAGAGCCTTCCACCCGCTGAAGCGCAATGAACTGCTGTATCGT
TTGGCTCCGGACTACCCGGCCTATAGCAGGACTCTAAAAACACTGCAGGA
CTTTACCAACGAGATCATCGCTAAGCGCATTGAAGCCCACAAATCGGGTG
CAGTTTCGACCAACGCGGGAGATGAGTTCACTCGCAAGAAAATGGCCTTT
TTAGACACTCTGCTGTCCTCCACTATTGATGGTCGTCCCCTGAACTCCAA
GGAACTGTACGAAGAGGTCTCCACATTTATGTTTGAAGGACATGATACTA
CCACTTCTGGAGTGTCGTTCGCTGTCTATTTGCTTTCTAGACATCAAGAT
GAACAGCGCAAACTATTTAAGGAGCAACGCGAAGTAATGGGTAATTCCGA
ACTGGGTCGCGATGCCACCTTCCAGGAAATATCCCAAATGAAGTACTTGG
ATCTCTTTATCAAGGAGGCCCAGCGTGTTTATCCCAGCGTGCCTTTCATT
GGACGATTTACGGAGAAAGACTATGTTATAGATGGGGATCTCGTACCCAA
GGGCACCACACTGAACCTGGGTCTCGTGATGCTGGGTTATAACGAAAAGG
TGTTCAAAGATCCCCACAAGTTCCGACCTGAGCGCTTTGAGCTGGAGAAA
CCAGGACCTTTTGAGTATGTACCCTTCAGCGCTGGACCCCGAAACTGCAT
TGGTCAGAAGTTCGCCCTGCTGGAGATTAAGACTGTGGTATCCAAGATCA
TTAGGAACTTCGAGGTGCTTCCTGCTCTGGATGAGCTCGTCTCTAAGGAT
GGCTATATAAGCACCACTATTGGACTCCCTGATGCCGAGAGGAAGAAGCG
CGATCCATACCGTCACAAATACGACCCTATTCTTTCCGCTGTGCTGACCC
TGAAATCCGAAAATGGTCTATACATTCGGCTGAAGGAAAGGCACTAAAAG
CTTTCTAGACCAT

BS07987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e2-RB 1581 CG2060-PB 1..1581 17..1597 7905 100 Plus
Cyp4e2-RA 1581 CG2060-PA 1..1581 17..1597 7905 100 Plus
Cyp4e1-RA 1596 CG2062-PA 115..1452 131..1468 2175 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e2-RB 1880 CG2060-RB 158..1740 17..1599 7915 100 Plus
Cyp4e2-RA 1783 CG2060-RA 61..1643 17..1599 7915 100 Plus
Cyp4e1-RA 1772 CG2062-RA 167..1504 131..1468 2175 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8446601..8447024 1176..1599 2120 100 Plus
2R 25286936 2R 8445942..8446311 637..1006 1850 100 Plus
2R 25286936 2R 8445534..8445883 287..636 1750 100 Plus
2R 25286936 2R 8448106..8448452 290..636 940 84.7 Plus
2R 25286936 2R 8446370..8446546 1005..1181 885 100 Plus
2R 25286936 2R 8444771..8444930 17..176 800 100 Plus
2R 25286936 2R 8449188..8449477 1179..1468 595 80.3 Plus
2L 23513712 2L 9749150..9749427 636..359 595 80.9 Minus
2R 25286936 2R 8445356..8445467 175..286 560 100 Plus
2R 25286936 2R 8448533..8448896 643..1006 380 73.6 Plus
2L 23513712 2L 9748021..9748416 1591..1196 315 72 Minus
2R 25286936 2R 8448965..8449128 1010..1173 310 79.3 Plus
2L 23513712 2L 9748729..9748888 995..836 290 78.8 Minus
2L 23513712 2L 9748513..9748600 1157..1070 200 81.8 Minus
Blast to na_te.dros performed on 2014-11-28 00:34:03 has no hits.

BS07987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:01 Download gff for BS07987.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 1..1581 17..1597 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:19 Download gff for BS07987.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 54..1646 12..1605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:47 Download gff for BS07987.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 61..1639 17..1595 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:01 Download gff for BS07987.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 54..1646 12..1605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:44 Download gff for BS07987.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e2-RA 61..1639 17..1595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:44 Download gff for BS07987.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8445534..8445883 287..636 100 -> Plus
2R 8445942..8446311 637..1006 100 -> Plus
2R 8444771..8444930 17..176 100 -> Plus
2R 8445358..8445467 177..286 100 -> Plus
2R 8446372..8446546 1007..1181 100 -> Plus
2R 8446607..8447020 1182..1595 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:47 Download gff for BS07987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4333877..4334051 1007..1181 100 -> Plus
arm_2R 4332276..4332435 17..176 100 -> Plus
arm_2R 4332863..4332972 177..286 100 -> Plus
arm_2R 4333039..4333388 287..636 100 -> Plus
arm_2R 4333447..4333816 637..1006 100 -> Plus
arm_2R 4334112..4334525 1182..1595 100   Plus

BS07987.pep Sequence

Translation from 16 to 1596

> BS07987.pep
MWFVLYIFLALPLLLVAYLELSTFRRRRVLNKFNGPRGLPLMGNAHQMGK
NPSEILDTVFSWWHQYGKDNFVFWIGTYSNVLVTSSKYLEFILSSQTLIT
KSDIYQLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIKHLKTVAAGDNIFDFQEQAHYLTLDVICDTAMGVSINAMENRSSS
IVQAFKDMCYNINMRAFHPLKRNELLYRLAPDYPAYSRTLKTLQDFTNEI
IAKRIEAHKSGAVSTNAGDEFTRKKMAFLDTLLSSTIDGRPLNSKELYEE
VSTFMFEGHDTTTSGVSFAVYLLSRHQDEQRKLFKEQREVMGNSELGRDA
TFQEISQMKYLDLFIKEAQRVYPSVPFIGRFTEKDYVIDGDLVPKGTTLN
LGLVMLGYNEKVFKDPHKFRPERFELEKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTIGLPDAERKKRDPYRH
KYDPILSAVLTLKSENGLYIRLKERH*

BS07987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e2-PB 526 CG2060-PB 1..526 1..526 2751 100 Plus
Cyp4e2-PA 526 CG2060-PA 1..526 1..526 2751 100 Plus
Cyp4e1-PA 531 CG2062-PA 1..525 1..525 2251 80.8 Plus
Cyp4e3-PA 526 CG4105-PA 1..524 1..525 1959 69 Plus
Cyp4d1-PA 512 CG3656-PA 1..479 1..467 925 41.5 Plus