Clone Sequence Records
BS07987.3prime Sequence
964 bp (761 high quality bases) assembled on 2006-01-06
> BS07987.3prime
ATGGTCTAGAAAGCTTTTAGTGCCTTTCCTTCAGCCGAATGTATAGACCA
TTTTCGGATTTCAGGGTCAGCACAGCGGAAAGAATAGGGTCGTATTTGTG
ACGGTATGGATCGCGCTTCTTCCTCTCGGCATCAGGGAGTCCAATAGTGG
TGCTTATATAGCCATCCTTAGAGACGAGCTCATCCAGAGCAGGAAGCACC
TCGAAGTTCCTAATGATCTTGGATACCACAGTCTTAATCTCCAGCAGGGC
GAACTTCTGACCAATGCAGTTTCGGGGTCCAGCGCTGAAGGGTACATACT
CAAAAGGTCCTGGTTTCTCCAGCTCAAAGCGCTCAGGTCGGAACTTGTGG
GGATCTTTGAACACCTTTTCGTTATAACCCAGCATCACGAGACCCAGGTT
CAGTGTGGTGCCCTTGGGTACGAGATCCCCATCTATAACATAGTCTTTCT
CCGTAAATCGTCCAATGAAAGGCACGCTGGGATAAACACGCTGGGCCTCC
TTGATAAAGAGATCCAAGTACTTCATTTGGGATATTTCCTGGAAGGTGGC
ATCGCGACCCAGTTCGGAATTACCCATTACTTCGCGTTGCTCCTTAAATA
GTTTGCGCTGTTCATCTTGATGTCTAGAAAGCAAATAGACAGCGAACGAC
ACTCCAGAAGTGGTAGTATCATGTCCTTCAAACATAAATGTGGAGACCTC
TTCGTACAGTTCCTTGGAGTTCAGGGGACGACCATCAATAGTGGAGGACA
GCAGAGTGTCTAANAAGGCCATTTTCTTGCGAGTGAACTCATCTCCCGCG
TTGGTCGAAACTGCACCCGATTTGTGGGCTTNCATGCGCTTAGCGATGAT
CTCGTTGGTAAAGTCCTGCAGTGTTTTTAGAGTCCTGCTATAGGGCGGGT
AGTCGGGAAGCAAACGATACAGCAGTTCATTGCGCTTCAGCGGGTGGAAA
GCTCTCATGTTGAT
BS07987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2060-PA | 1581 | Cyp4e2-RA | 634..1581 | 964..17 | 4552 | 99.1 | Minus |
CG2062-PA | 1596 | Cyp4e1-RA | 1279..1448 | 319..150 | 350 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1880 | CG2060-RB | 791..1740 | 964..15 | 4638 | 99.2 | Minus |
Cyp4e2-RA | 1783 | CG2060-RA | 694..1643 | 964..15 | 4638 | 99.2 | Minus |
Cyp4e1-RA | 1772 | CG2062-RA | 773..1504 | 877..146 | 1228 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8446601..8447024 | 438..15 | 2120 | 100 | Minus |
2R | 25286936 | 2R | 8445955..8446311 | 964..608 | 1673 | 97.8 | Minus |
2R | 25286936 | 2R | 8446370..8446546 | 609..433 | 885 | 100 | Minus |
2R | 25286936 | 2R | 8449188..8449477 | 435..146 | 595 | 80.3 | Minus |
2R | 25286936 | 2R | 8448714..8448896 | 790..608 | 364 | 79.8 | Minus |
2L | 23513712 | 2L | 9748021..9748416 | 23..418 | 315 | 72 | Plus |
2R | 25286936 | 2R | 8448965..8449128 | 604..441 | 310 | 79.3 | Minus |
2L | 23513712 | 2L | 9748729..9748888 | 619..778 | 279 | 78.1 | Plus |
2L | 23513712 | 2L | 9748513..9748600 | 457..544 | 200 | 81.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:41:24 has no hits.
BS07987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:08 Download gff for
BS07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 634..1581 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:16 Download gff for
BS07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 634..1581 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:44:47 Download gff for
BS07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 694..1647 | 9..964 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:05 Download gff for
BS07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 694..1647 | 9..964 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:05 Download gff for
BS07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8445955..8446311 | 608..964 | 97 | -> | Minus |
2R | 8446372..8446546 | 433..607 | 100 | -> | Minus |
2R | 8446607..8447028 | 9..432 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:44:47 Download gff for
BS07987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4333460..4333816 | 608..964 | 97 | -> | Minus |
arm_2R | 4333877..4334051 | 433..607 | 100 | -> | Minus |
arm_2R | 4334112..4334533 | 9..432 | 99 | | Minus |
BS07987.5prime Sequence
916 bp (814 high quality bases) assembled on 2006-01-06
> BS07987.5prime
GAAGTTATCAGTCGACATGTGGTTCGTGTTGTATATTTTTCTGGCCCTAC
CACTGCTGCTGGTTGCATATCTGGAGTTGAGCACATTCCGCCGGAGAAGA
GTGCTTAACAAGTTCAACGGCCCCCGCGGCCTGCCGCTGATGGGAAACGC
TCATCAAATGGGCAAGAATCCGTCAGAAATACTCGACACGGTTTTCTCCT
GGTGGCATCAGTATGGAAAAGACAACTTCGTCTTTTGGATTGGAACGTAT
TCTAATGTATTGGTCACCAGCTCCAAGTACCTTGAATTCATACTCAGCAG
TCAGACGCTGATCACAAAGTCCGACATTTATCAACTAACACACCCTTGGC
TGGGATTAGGTCTCCTCACCAGTACTGGCAGCAAATGGCATAAACACCGC
AAGATGATCACCCCAGCATTCCACTTCAACATCCTGCAGGACTTCCACGA
GGTGATGAACGAGAACTCCACCAAGTTTATCAAGCACTTAAAGACAGTTG
CTGCCGGGGACAATATATTCGACTTCCAAGAACAGGCCCACTATTTGACC
CTGGATGTCATTTGCGACACAGCGATGGGTGTGTCCATCAATGCCATGGA
AAACCGCAGCTCTTCCATTGTGCAGGCCTTCAAAGACATGTGCTACAACA
TCAACATGAGAGCCTTCCACCCGCTGAAGCGCAATGAACTGCTGTATCGT
TTGGCTCCGGACTACCCGGCCTATAGCAGGACTCTAAAAACACTGCAGGA
CTTTACCAACGAGATCATCGCTAAGCGCATTGAAGCCCACAAATCGGGTG
CAGTTTCGACCAACGCGGGAGATGAGTTCACTCGCAAGAAAATGGCCTTT
TTAGACACTCTGCTGTCCTCCACTATTGATGGTCGTCCCCTGAACTCCAA
GGACTGTACGAAGAGG
BS07987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2060-PA | 1581 | Cyp4e2-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
CG2062-PA | 1596 | Cyp4e1-RA | 325..461 | 341..477 | 460 | 93.4 | Plus |
CG4105-PA | 1581 | Cyp4e3-RA | 367..464 | 383..480 | 390 | 95.9 | Plus |
CG2062-PA | 1596 | Cyp4e1-RA | 526..590 | 542..606 | 225 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1880 | CG2060-RB | 158..1058 | 17..916 | 4480 | 99.9 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 61..961 | 17..916 | 4480 | 99.9 | Plus |
Cyp4e1-RA | 1772 | CG2062-RA | 167..929 | 131..893 | 1195 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8445534..8445883 | 287..636 | 1750 | 100 | Plus |
2R | 25286936 | 2R | 8445942..8446222 | 637..916 | 1355 | 99.6 | Plus |
2R | 25286936 | 2R | 8448106..8448452 | 290..636 | 940 | 84.7 | Plus |
2R | 25286936 | 2R | 8444771..8444930 | 17..176 | 800 | 100 | Plus |
2L | 23513712 | 2L | 9749150..9749427 | 636..359 | 595 | 80.9 | Minus |
2R | 25286936 | 2R | 8445356..8445467 | 175..286 | 560 | 100 | Plus |
2R | 25286936 | 2R | 8448533..8448783 | 643..893 | 190 | 71.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:31:39 has no hits.
BS07987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:09 Download gff for
BS07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:18 Download gff for
BS07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:56 Download gff for
BS07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 55..961 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:08 Download gff for
BS07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 55..961 | 12..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:08 Download gff for
BS07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8444765..8444930 | 12..176 | 98 | -> | Plus |
2R | 8445358..8445467 | 177..286 | 100 | -> | Plus |
2R | 8445534..8445883 | 287..636 | 100 | -> | Plus |
2R | 8445942..8446222 | 637..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:56 Download gff for
BS07987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4332270..4332435 | 12..176 | 98 | -> | Plus |
arm_2R | 4332863..4332972 | 177..286 | 100 | -> | Plus |
arm_2R | 4333039..4333388 | 287..636 | 100 | -> | Plus |
arm_2R | 4333447..4333727 | 637..916 | 99 | | Plus |
BS07987.complete Sequence
1613 bp (1613 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636051
> BS07987.complete
GAAGTTATCAGTCGACATGTGGTTCGTGTTGTATATTTTTCTGGCCCTAC
CACTGCTGCTGGTTGCATATCTGGAGTTGAGCACATTCCGCCGGAGAAGA
GTGCTTAACAAGTTCAACGGCCCCCGCGGCCTGCCGCTGATGGGAAACGC
TCATCAAATGGGCAAGAATCCGTCAGAAATACTCGACACGGTTTTCTCCT
GGTGGCATCAGTATGGAAAAGACAACTTCGTCTTTTGGATTGGAACGTAT
TCTAATGTATTGGTCACCAGCTCCAAGTACCTTGAATTCATACTCAGCAG
TCAGACGCTGATCACAAAGTCCGACATTTATCAACTAACACACCCTTGGC
TGGGATTAGGTCTCCTCACCAGTACTGGCAGCAAATGGCATAAACACCGC
AAGATGATCACCCCAGCATTCCACTTCAACATCCTGCAGGACTTCCACGA
GGTGATGAACGAGAACTCCACCAAGTTTATCAAGCACTTAAAGACAGTTG
CTGCCGGGGACAATATATTCGACTTCCAAGAACAGGCCCACTATTTGACC
CTGGATGTCATTTGCGACACAGCGATGGGTGTGTCCATCAATGCCATGGA
AAACCGCAGCTCTTCCATTGTGCAGGCCTTCAAAGACATGTGCTACAACA
TCAACATGAGAGCCTTCCACCCGCTGAAGCGCAATGAACTGCTGTATCGT
TTGGCTCCGGACTACCCGGCCTATAGCAGGACTCTAAAAACACTGCAGGA
CTTTACCAACGAGATCATCGCTAAGCGCATTGAAGCCCACAAATCGGGTG
CAGTTTCGACCAACGCGGGAGATGAGTTCACTCGCAAGAAAATGGCCTTT
TTAGACACTCTGCTGTCCTCCACTATTGATGGTCGTCCCCTGAACTCCAA
GGAACTGTACGAAGAGGTCTCCACATTTATGTTTGAAGGACATGATACTA
CCACTTCTGGAGTGTCGTTCGCTGTCTATTTGCTTTCTAGACATCAAGAT
GAACAGCGCAAACTATTTAAGGAGCAACGCGAAGTAATGGGTAATTCCGA
ACTGGGTCGCGATGCCACCTTCCAGGAAATATCCCAAATGAAGTACTTGG
ATCTCTTTATCAAGGAGGCCCAGCGTGTTTATCCCAGCGTGCCTTTCATT
GGACGATTTACGGAGAAAGACTATGTTATAGATGGGGATCTCGTACCCAA
GGGCACCACACTGAACCTGGGTCTCGTGATGCTGGGTTATAACGAAAAGG
TGTTCAAAGATCCCCACAAGTTCCGACCTGAGCGCTTTGAGCTGGAGAAA
CCAGGACCTTTTGAGTATGTACCCTTCAGCGCTGGACCCCGAAACTGCAT
TGGTCAGAAGTTCGCCCTGCTGGAGATTAAGACTGTGGTATCCAAGATCA
TTAGGAACTTCGAGGTGCTTCCTGCTCTGGATGAGCTCGTCTCTAAGGAT
GGCTATATAAGCACCACTATTGGACTCCCTGATGCCGAGAGGAAGAAGCG
CGATCCATACCGTCACAAATACGACCCTATTCTTTCCGCTGTGCTGACCC
TGAAATCCGAAAATGGTCTATACATTCGGCTGAAGGAAAGGCACTAAAAG
CTTTCTAGACCAT
BS07987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1581 | CG2060-PB | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Cyp4e2-RA | 1581 | CG2060-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Cyp4e1-RA | 1596 | CG2062-PA | 115..1452 | 131..1468 | 2175 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1880 | CG2060-RB | 158..1740 | 17..1599 | 7915 | 100 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 61..1643 | 17..1599 | 7915 | 100 | Plus |
Cyp4e1-RA | 1772 | CG2062-RA | 167..1504 | 131..1468 | 2175 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8446601..8447024 | 1176..1599 | 2120 | 100 | Plus |
2R | 25286936 | 2R | 8445942..8446311 | 637..1006 | 1850 | 100 | Plus |
2R | 25286936 | 2R | 8445534..8445883 | 287..636 | 1750 | 100 | Plus |
2R | 25286936 | 2R | 8448106..8448452 | 290..636 | 940 | 84.7 | Plus |
2R | 25286936 | 2R | 8446370..8446546 | 1005..1181 | 885 | 100 | Plus |
2R | 25286936 | 2R | 8444771..8444930 | 17..176 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8449188..8449477 | 1179..1468 | 595 | 80.3 | Plus |
2L | 23513712 | 2L | 9749150..9749427 | 636..359 | 595 | 80.9 | Minus |
2R | 25286936 | 2R | 8445356..8445467 | 175..286 | 560 | 100 | Plus |
2R | 25286936 | 2R | 8448533..8448896 | 643..1006 | 380 | 73.6 | Plus |
2L | 23513712 | 2L | 9748021..9748416 | 1591..1196 | 315 | 72 | Minus |
2R | 25286936 | 2R | 8448965..8449128 | 1010..1173 | 310 | 79.3 | Plus |
2L | 23513712 | 2L | 9748729..9748888 | 995..836 | 290 | 78.8 | Minus |
2L | 23513712 | 2L | 9748513..9748600 | 1157..1070 | 200 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:03 has no hits.
BS07987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:01 Download gff for
BS07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 1..1581 | 17..1597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:19 Download gff for
BS07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 54..1646 | 12..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:47 Download gff for
BS07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 61..1639 | 17..1595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:01 Download gff for
BS07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 54..1646 | 12..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:44 Download gff for
BS07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 61..1639 | 17..1595 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:44 Download gff for
BS07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8445534..8445883 | 287..636 | 100 | -> | Plus |
2R | 8445942..8446311 | 637..1006 | 100 | -> | Plus |
2R | 8444771..8444930 | 17..176 | 100 | -> | Plus |
2R | 8445358..8445467 | 177..286 | 100 | -> | Plus |
2R | 8446372..8446546 | 1007..1181 | 100 | -> | Plus |
2R | 8446607..8447020 | 1182..1595 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:47 Download gff for
BS07987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4333877..4334051 | 1007..1181 | 100 | -> | Plus |
arm_2R | 4332276..4332435 | 17..176 | 100 | -> | Plus |
arm_2R | 4332863..4332972 | 177..286 | 100 | -> | Plus |
arm_2R | 4333039..4333388 | 287..636 | 100 | -> | Plus |
arm_2R | 4333447..4333816 | 637..1006 | 100 | -> | Plus |
arm_2R | 4334112..4334525 | 1182..1595 | 100 | | Plus |
BS07987.pep Sequence
Translation from 16 to 1596
> BS07987.pep
MWFVLYIFLALPLLLVAYLELSTFRRRRVLNKFNGPRGLPLMGNAHQMGK
NPSEILDTVFSWWHQYGKDNFVFWIGTYSNVLVTSSKYLEFILSSQTLIT
KSDIYQLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIKHLKTVAAGDNIFDFQEQAHYLTLDVICDTAMGVSINAMENRSSS
IVQAFKDMCYNINMRAFHPLKRNELLYRLAPDYPAYSRTLKTLQDFTNEI
IAKRIEAHKSGAVSTNAGDEFTRKKMAFLDTLLSSTIDGRPLNSKELYEE
VSTFMFEGHDTTTSGVSFAVYLLSRHQDEQRKLFKEQREVMGNSELGRDA
TFQEISQMKYLDLFIKEAQRVYPSVPFIGRFTEKDYVIDGDLVPKGTTLN
LGLVMLGYNEKVFKDPHKFRPERFELEKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTIGLPDAERKKRDPYRH
KYDPILSAVLTLKSENGLYIRLKERH*
BS07987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-PB | 526 | CG2060-PB | 1..526 | 1..526 | 2751 | 100 | Plus |
Cyp4e2-PA | 526 | CG2060-PA | 1..526 | 1..526 | 2751 | 100 | Plus |
Cyp4e1-PA | 531 | CG2062-PA | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e3-PA | 526 | CG4105-PA | 1..524 | 1..525 | 1959 | 69 | Plus |
Cyp4d1-PA | 512 | CG3656-PA | 1..479 | 1..467 | 925 | 41.5 | Plus |