Clone Sequence Records
BS07991.3prime Sequence
906 bp (842 high quality bases) assembled on 2006-01-06
> BS07991.3prime
ATGGTCTAGAAAGCTTTTACTGTGCATTTCGCACGTACTCGGGATCAACG
TTGATAAAGTTGCTCATGCTGAAAAATATTGAGCTGTTCTTTACGAGGAA
TTTAAGGAAATCCTGCACGTGCGTGAGTAGGTTCTGCATGGACTGCTGAT
CCAACGCAGAGTAGCTGAGCATTGAGCCAAGGCGGACAAACAGACGCAGC
AGGTGAAAAGATCCGTAAAGCTCGGACAACGGTGTGTCCGGATGCTTCTG
CATCACATCCGCGTACTGGGTGCGTTCGAATTTGTACAGCAACTGGGAGC
CCAGCATTACATTGAAGTACTCTACAATTCCGTCGAGTACATCGTTTATG
GCAACCTCCTTGCTGGCACTGGTCGATTTCACGGACTTCTTGTGCGCCAA
ATACTGCTCAGAGATCTGCTGCACGGTAACCTTGGCGGGCAGCTCCAGCA
GTTTGTGCTCCCGCACCACCGCATACCAGTCGTCGGTCAGATAGTGCTTT
AACTCGTCGGGTATCTTAATCTTGACCTCCACCTTAGCTGCGTAGGCCTC
CTCGCTTTCCACACACGGTGCCGGCTCCGTGGTGGGTGTGGATGGAGTGG
TAGTGGGCGGCAACGGCTTTTCTGCTACATCGCTTCCCGTAAGAGAAGGC
CGTTGTTCGCTCATTCTTTTCTTTTTCGGCGCCACCGGCCCCTCTTCCTC
AGTGGTCTCAGCTGCGGCGGGGTCTTCCTTTTTATCACTCGGCGTGCCAG
GTCTTGCTGTGGATGGCGTCGATTGTGTGGACTTTCGGTGGGCCCGGCTG
GTTGTAGAGTTGGCGGTGCTGTTAGTAGTCGTGGTGCCAGTGCTCCCGGG
CTTCGATTTGCTTCCCGGTCCGGCGCTAGTTGGTGGTGTGCTGCTAGCGG
TCGATT
BS07991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6363-PA | 1275 | MRG15-RA | 443..1275 | 849..17 | 4165 | 100 | Minus |
CG6363-PA | 1275 | MRG15-RA | 386..438 | 906..854 | 240 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RB | 1511 | CG6363-RB | 477..1366 | 906..17 | 4390 | 99.7 | Minus |
MRG15-RA | 1496 | CG6363-RA | 462..1351 | 906..17 | 4390 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15276585..15277474 | 17..906 | 4390 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:03:43 has no hits.
BS07991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:15 Download gff for
BS07991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-PA | 386..1275 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:27 Download gff for
BS07991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6363-PA | 386..1275 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:11:22 Download gff for
BS07991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 462..1353 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:43 Download gff for
BS07991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 462..1353 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:43 Download gff for
BS07991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15276583..15277474 | 13..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:11:22 Download gff for
BS07991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11102305..11103196 | 13..906 | 99 | | Plus |
BS07991.5prime Sequence
954 bp (823 high quality bases) assembled on 2006-01-06
> BS07991.5prime
GAAGTTATCAGTCGACATGGGAGAAGTAAAACCCGCTAAAGTGGAAAACT
ATAGCACGGGGACCGATGCAAACACTCTGTTCGTGGATGGGGAACGGGTT
CTGTGCTTCCACGGACCGCTCATCTACGAGGCCAAGGTTCTGAAAACAAA
ACCCGATGCGACGCCGGTTGAGTACTACATCCACTACGCGGGCTGGAGTA
AAAACTGGGACGAGTGGGTGCCCGAGAACCGAGTCCTCAAGTACAACGAT
GACAACGTCAAGCGACGTCAGGAACTGGCTCGCCAGTGCGGCGAGCGCTC
CAAGAAGGATAATAAGAAAGGCAGCGCCAAGGCCAAGAAAATGGAACAGA
TGCGGAACGAATCTCGTGCCTCGACGCCGTCTAAGGATAGCAACACCTCG
CAATCGACCGCTAGCAGCACACCAACAACTAGCGCCGGACCGGGAAGCAA
ATCGGAAGCCGGGAGCACTGGCACCACGACTACTAACAGCACCGCCAACT
CTACAACCAGCCGGGCCCACCGAAAGTCCACACAATCGACGCCATCCACA
GCAAGACCTGGCACGCCGAGTGATAAAAAGGAAGACCCCGCCGCAGCTGA
GACCACTGAGGAAGAGGGGCCGGTGGCGCCGAAAAAGAAAAGAATGAGCG
AACAACGGCCTTCTCTTACGGGAAGCGATGTAGCAGAAAAGCCGTTGCCG
CCCACTACCACTCCATCCACACCCACCACGGAGCCGGCACCGTGTGTGGA
AAGCGAGGAGGCCTACGCAGCTAAGGTGGAGGTCAAGATTAAGATACCCG
ACGAGTTAAAGCACTATCTGACCGACGACTGGTATGCGGTGGTGCGGGAG
CACAAACTGCTGAAGCTGCCCCGCCAAGTTACCGTGCAGCAGATCTCTGA
GCAGTATTTTGCGCACAAGAAGTCCGTGAAATCCGACAGTGCCCAGCAAG
GAGG
BS07991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6363-PA | 1275 | MRG15-RA | 1..855 | 17..871 | 4250 | 99.8 | Plus |
CG6363-PA | 1275 | MRG15-RA | 862..917 | 878..933 | 255 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RA | 1496 | CG6363-RA | 77..1013 | 17..954 | 4545 | 99.3 | Plus |
MRG15-RB | 1511 | CG6363-RB | 77..1028 | 17..954 | 4385 | 97.7 | Plus |
l(3)neo43-RC | 627 | CG14865-RC | 575..627 | 17..69 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15276923..15277557 | 954..319 | 2995 | 98.4 | Minus |
3R | 32079331 | 3R | 15277613..15277729 | 321..205 | 585 | 100 | Minus |
3R | 32079331 | 3R | 15277786..15277901 | 204..89 | 580 | 100 | Minus |
3R | 32079331 | 3R | 15277960..15278033 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:47:20 has no hits.
BS07991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:17 Download gff for
BS07991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-PA | 1..937 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:28 Download gff for
BS07991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6363-PA | 1..937 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:42:31 Download gff for
BS07991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1013 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:00 Download gff for
BS07991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1013 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:00 Download gff for
BS07991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15276923..15277555 | 321..954 | 98 | <- | Minus |
3R | 15277614..15277729 | 205..320 | 100 | <- | Minus |
3R | 15277786..15277900 | 90..204 | 100 | <- | Minus |
3R | 15277961..15278033 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:42:31 Download gff for
BS07991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11103683..11103755 | 17..89 | 100 | | Minus |
arm_3R | 11102645..11103277 | 321..954 | 98 | <- | Minus |
arm_3R | 11103336..11103451 | 205..320 | 100 | <- | Minus |
arm_3R | 11103508..11103622 | 90..204 | 100 | <- | Minus |
BS07991.complete Sequence
1307 bp (1307 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636052
> BS07991.complete
GAAGTTATCAGTCGACATGGGAGAAGTAAAACCCGCTAAAGTGGAAAACT
ATAGCACGGGGACCGATGCAAACACTCTGTTCGTGGATGGGGAACGGGTT
CTGTGCTTCCACGGACCGCTCATCTACGAGGCCAAGGTTCTGAAAACAAA
ACCCGATGCGACGCCGGTTGAGTACTACATCCACTACGCGGGCTGGAGTA
AAAACTGGGACGAGTGGGTGCCCGAGAACCGAGTCCTCAAGTACAACGAT
GACAACGTCAAGCGACGTCAGGAACTGGCTCGCCAGTGCGGCGAGCGCTC
CAAGAAGGATAATAAGAAAGGCAGCGCCAAGGCCAAGAAAATGGAACAGA
TGCGGAACGAATCTCGTGCCTCGACGCCGTCTAAGGATAGCAACACCTCG
CAATCGACCGCTAGCAGCACACCAACAACTAGCGCCGGACCGGGAAGCAA
ATCGGAAGCCGGGAGCACTGGCACCACGACTACTAACAGCACCGCCAACT
CTACAACCAGCCGGGCCCACCGAAAGTCCACACAATCGACGCCATCCACA
GCAAGACCTGGCACGCCGAGTGATAAAAAGGAAGACCCCGCCGCAGCTGA
GACCACTGAGGAAGAGGGGCCGGTGGCGCCGAAAAAGAAAAGAATGAGCG
AACAACGGCCTTCTCTTACGGGAAGCGATGTAGCAGAAAAGCCGTTGCCG
CCCACTACCACTCCATCCACACCCACCACGGAGCCGGCACCGTGTGTGGA
AAGCGAGGAGGCCTACGCAGCTAAGGTGGAGGTCAAGATTAAGATACCCG
ACGAGTTAAAGCACTATCTGACCGACGACTGGTATGCGGTGGTGCGGGAG
CACAAACTGCTGGAGCTGCCCGCCAAGGTTACCGTGCAGCAGATCTCTGA
GCAGTATTTGGCGCACAAGAAGTCCGTGAAATCGACCAGTGCCAGCAAGG
AGGTTGCCATAAACGATGTACTCGACGGAATTGTAGAGTACTTCAATGTA
ATGCTGGGCTCCCAGTTGCTGTACAAATTCGAACGCACCCAGTACGCGGA
TGTGATGCAGAAGCATCCGGACACACCGTTGTCCGAGCTTTACGGATCTT
TTCACCTGCTGCGTCTGTTTGTCCGCCTTGGCTCAATGCTCAGCTACTCT
GCGTTGGATCAGCAGTCCATGCAGAACCTACTCACGCACGTGCAGGATTT
CCTTAAATTCCTCGTAAAGAACAGCTCAATATTTTTCAGCATGAGCAACT
TTATCAACGTTGATCCCGAGTACGTGCGAAATGCACAGTAAAAGCTTTCT
AGACCAT
BS07991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RA | 1275 | CG6363-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
MRG15-RB | 1290 | CG6363-PB | 1..1290 | 17..1291 | 6190 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RA | 1496 | CG6363-RA | 77..1351 | 17..1291 | 6375 | 100 | Plus |
MRG15-RB | 1511 | CG6363-RB | 77..1366 | 17..1291 | 6190 | 98.8 | Plus |
l(3)neo43-RC | 627 | CG14865-RC | 575..627 | 17..69 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15276585..15277557 | 1291..319 | 4865 | 100 | Minus |
3R | 32079331 | 3R | 15277613..15277729 | 321..205 | 585 | 100 | Minus |
3R | 32079331 | 3R | 15277786..15277901 | 204..89 | 580 | 100 | Minus |
3R | 32079331 | 3R | 15277960..15278033 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:21:49 has no hits.
BS07991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:49 Download gff for
BS07991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:01 Download gff for
BS07991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1353 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:55 Download gff for
BS07991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1349 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:49 Download gff for
BS07991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1353 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:44 Download gff for
BS07991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1349 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:44 Download gff for
BS07991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15276587..15277555 | 321..1289 | 100 | <- | Minus |
3R | 15277614..15277729 | 205..320 | 100 | <- | Minus |
3R | 15277786..15277900 | 90..204 | 100 | <- | Minus |
3R | 15277961..15278033 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:55 Download gff for
BS07991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11102309..11103277 | 321..1289 | 100 | <- | Minus |
arm_3R | 11103336..11103451 | 205..320 | 100 | <- | Minus |
arm_3R | 11103508..11103622 | 90..204 | 100 | <- | Minus |
arm_3R | 11103683..11103755 | 17..89 | 100 | | Minus |
BS07991.pep Sequence
Translation from 16 to 1290
> BS07991.pep
MGEVKPAKVENYSTGTDANTLFVDGERVLCFHGPLIYEAKVLKTKPDATP
VEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQCGERSKKDNK
KGSAKAKKMEQMRNESRASTPSKDSNTSQSTASSTPTTSAGPGSKSEAGS
TGTTTTNSTANSTTSRAHRKSTQSTPSTARPGTPSDKKEDPAAAETTEEE
GPVAPKKKRMSEQRPSLTGSDVAEKPLPPTTTPSTPTTEPAPCVESEEAY
AAKVEVKIKIPDELKHYLTDDWYAVVREHKLLELPAKVTVQQISEQYLAH
KKSVKSTSASKEVAINDVLDGIVEYFNVMLGSQLLYKFERTQYADVMQKH
PDTPLSELYGSFHLLRLFVRLGSMLSYSALDQQSMQNLLTHVQDFLKFLV
KNSSIFFSMSNFINVDPEYVRNAQ*
BS07991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-PA | 424 | CG6363-PA | 1..424 | 1..424 | 2193 | 100 | Plus |
MRG15-PB | 429 | CG6363-PB | 1..429 | 1..424 | 2177 | 98.8 | Plus |