Clone Sequence Records
BS08002.3prime Sequence
904 bp (869 high quality bases) assembled on 2006-01-06
> BS08002.3prime
ATGGTCTAGAAAGCTTTCATCTGCCCTTGAAGAACCTAGCCGTGCGTCCT
TGCACGGCTCCAAAGCCTCCATTCGCGGCGTTCGCCTCCACGATGTGGCG
GGAAATCCACTTCGGCAGTTTGCCGCGTATCTTCGGATCCGCAAAACGCT
TATCCAGCAGATATACGCAGGCATAGTCCTTGATGTGGCGCACTGCCCGT
CCTATGCACTGGTTGACAGCCTTTACGCAGAGATTCTCGTAGTATTCGTT
GCCTGCGCCCGGTCCCAGTTTCTCGTCCAGGTGCTGCATTCGCTGGCGCA
GCTCCGGCGACAGGCTGTTGGAATACGGCAGGCCCACTACGAGCACTGCT
CTGCCCAGATCGTCAGCGAAGTTCAGGCCTTCGGAGAGCTTTCCTCCCAC
GACACTCAGGAGGAGGGCTCCATACGAAGCAGGTCTCTTAATGGCCAGCG
CATAGTTGTCCAGGAGCTGCTCGGCCGATCCGGAGACCTCACGAAACACG
CTTTTCCTGCCGCTAATCGTCTCGAGGGTGCCGGACTGCTCCAGGTACTT
GTAGACCTTGTCTAAATACTCGTAGGACGGCAGGAAGCAAACTACTCCGC
CCGGCACCACTTGGCACAGATTCCGAAGAATCATTGAGAGCTCCCGGAGC
ATTTCTGCACTGCCTCTATGAGCAAACTTAAAAGACAGCGGAGCACCGCT
GGGGCCATTGGATATCACAAAGGGCAAGATCGCGTCATTCGCCACCACGT
GGTTGTAGAAACGCTCGACCAAACGATCATGGCAACCGGTAAATAGCTGC
TCCTTCAGCTCCTTAGTGGGCTGCATGGTTCCGCCAGCGATCACAATCGC
TCTGGCTTTCTGCACGATGTCGGCGAATTGCTCGGCGGGGTCGAGGATAT
GTAC
BS08002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-PA | 2586 | CG11403-RA | 1745..2586 | 858..17 | 4210 | 100 | Minus |
| CG11403-PA | 2586 | CG11403-RA | 1706..1739 | 897..864 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-RA | 2890 | CG11403-RA | 1800..2688 | 904..17 | 4375 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1237075..1237708 | 17..650 | 3170 | 100 | Plus |
| X | 23542271 | X | 1237766..1237964 | 650..848 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:31:23 has no hits.
BS08002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:27 Download gff for
BS08002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-PA | 1698..2586 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:40 Download gff for
BS08002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-PA | 1698..2586 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:26 Download gff for
BS08002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 1800..2693 | 10..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:58:28 Download gff for
BS08002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 1800..2693 | 10..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:58:28 Download gff for
BS08002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1237070..1237707 | 10..649 | 99 | <- | Plus |
| X | 1237766..1237963 | 650..847 | 100 | <- | Plus |
| X | 1238028..1238085 | 848..904 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:26 Download gff for
BS08002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1131103..1131740 | 10..649 | 99 | <- | Plus |
| arm_X | 1131799..1131996 | 650..847 | 100 | <- | Plus |
| arm_X | 1132061..1132118 | 848..904 | 94 | | Plus |
BS08002.5prime Sequence
950 bp (863 high quality bases) assembled on 2006-01-06
> BS08002.5prime
GAAGTTATCAGTCGACATGTCCCAGTACACGCCCAACCAGCGGCTGGACA
CGCCCGGCGCCCAGGAGTTCGGATTCCCGTACTCACCGTACGAAATCCAG
GAGCAGCTGATGCAGGAGCTCTTCCAAGTGCTCGAGAGAGGTCAGGTGGG
CATATTCGAGAGTCCAACGGGAACGGGGAAGTCCCTCACCCTCACCTGCG
GCGCCCTCACCTGGCTGGCTAGGCACGAGGAGCTGGTGCGCACGGAAATG
CTGGCCAGGATTCGCGGAGTAGAACAGGAGTTGGCTAAACTCAAGGAGGA
GAGCGAGCAGTCCAGTAACTGGCTGGAGAGCCAGGGAAAGTCCAGAGCAC
AGCGGGCGGAGCTCCTTAGATTGCAGCACCTGCAGGCTTTGCTGGACAAA
CAAGAGCAGCAGCTGGATCAGATCAGGAAAGGGGCTAAAAAGCATAAGCG
GCAAGGAAGGGTGCACCCAGGCAAGCTTGAGGAACTGGAGAAGGACCTGG
ATCCTGAATCCGACTCGGATTCAGAACACGAAACCGCCGATGGACCGCAG
GAAGCAGCCGAAGACCGCTATCGCCCTGTGCAAATCTTCTTTTGCAGCCG
CACCCATTCGCAGTTGGCACAAATTGTGGCCGAACTGCGGAAAACACCTC
ATGGCCAGTCGGTAAGGTCCATTTCCCTGGGCTCGCGGCAGCAGCTGTGC
GGGAATCCCGCAGTCCGGAAGCTGAAGCATGTCGGCCTGATGAACGAGCG
GTGCCTGGATATGGCTACCAAGAAAGCACGCCCCAATCCCAGCAAAAAAA
GTCGGCTAACTGCAGAGGCCAACAGTAGATGCCCGTTTAAAGCGGCTTCC
CTGGTGGAATCCCTCAGGGATTTGGCTTTGACCGAACCGCTGGACATCGA
GGAGCTGGCCNATGAGGGGACCGCCTGCGGTGGCTGCTCGTATTACGCCT
BS08002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-PA | 2586 | CG11403-RA | 1..934 | 17..950 | 4651 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-RA | 2890 | CG11403-RA | 103..1036 | 17..950 | 4659 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1238849..1239782 | 950..17 | 4659 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:07:09 has no hits.
BS08002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:28 Download gff for
BS08002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:41 Download gff for
BS08002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:48 Download gff for
BS08002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 94..1036 | 7..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:50 Download gff for
BS08002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 94..1036 | 7..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:50 Download gff for
BS08002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1238849..1239791 | 7..950 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:48 Download gff for
BS08002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1132882..1133824 | 7..950 | 99 | | Minus |
BS08002.complete Sequence
2618 bp assembled on 2008-01-03
GenBank Submission: FJ636053
> BS08002.complete
GAAGTTATCAGTCGACATGTCCCAGTACACGCCCAACCAGCGGCTGGACA
CGCCCGGCGCCCAGGAGTTCGGATTCCCGTACTCACCGTACGAAATCCAG
GAGCAGCTGATGCAGGAGCTCTTCCAAGTGCTCGAGAGAGGTCAGGTGGG
CATATTCGAGAGTCCAACGGGAACGGGGAAGTCCCTCACCCTCACCTGCG
GCGCCCTCACCTGGCTGGCTAGGCACGAGGAGCTGGTGCGCACGGAAATG
CTGGCCAGGATTCGCGGAGTAGAACAGGAGTTGGCTAAACTCAAGGAGGA
GAGCGAGCAGTCCAGTAACTGGCTGGAGAGCCAGGGAAAGTCCAGAGCAC
AGCGGGCGGAGCTCCTTAGATTGCAGCACCTGCAGGCTTTGCTGGACAAA
CAAGAGCAGCAGCTGGATCAGATCAGGAAAGGGGCTAAAAAGCATAAGCG
GCAAGGAAGGGTGCACCCAGGCAAGCTTGAGGAACTGGAGAAGGACCTGG
ATCCTGAATCCGACTCGGATTCAGAACACGAAACCGCCGATGGACCGCAG
GAAGCAGCCGAAGACCGCTATCGCCCTGTGCAAATCTTCTTTTGCAGCCG
CACCCATTCGCAGTTGGCACAAATTGTGGCCGAACTGCGGAAAACACCTC
ATGGCCAGTCGGTAAGGTCCATTTCCCTGGGCTCGCGGCAGCAGCTGTGC
GGGAATCCCGCAGTCCGGAAGCTGAAGCATGTCGGCCTGATGAACGAGCG
GTGCCTGGATATGGCTACCAAGAAAGCACGCCCCAATCCCAGCAAAAAAA
GTCGGCTAACTGCAGAGGCCAACAGTAGATGCCCGTTTAAAGCGGCTTCC
CTGGTGGAATCCCTCAGGGATTTGGCTTTGACCGAACCGCTGGACATCGA
GGAGCTGGCCAATGAGGGGACCGCCTGCGGTGGCTGCTCGTATTACGCCT
CAAGATCCGCTGTGGAGCACGCTCAACTTATACTACTGCCGTATCAACTG
CTGCTCCAGAAGTCCGCCCGTAACCAGCTGGGTATAAGTCTTAAGGGGTC
AATCGTCATAGTAGATGAGGCTCACAACCTACTGGACAGCGTGGCCCAGC
TGCACGGCTCCGAAATCAGCCGTCAGCAGTTGGAGCGGGCCAAGGTGCAG
ATCTCCGGCTATAAGGACCACTTCCAAAAGCGTTTCACCACCAAGAATCT
CCTGAAAATCAACCAAATCATCTTCATAATTCGCCGATTGCTTAAGATTC
TAGATCAGCGCAAGGAATTGCAGTCCAACGGCTGCAGCATGATGCGCACC
TATGAGCTAACCGCCGAGGGTGACTTCTTCAACATCGATCTGTGCGAGCT
TCTGGACTTTTGCGCTCGCACTCGTTTCGCGAGGAAAGTACAGGGACGTG
CAGACAGAATGGAGCGGGAACCACGGCCGAGTGAGAATCAAGCTCCTGTG
TCAACGGCGAGGAGTCTGATCCTCCAAAGATTGGCAAGCGAGCAAAAGCT
GAAAGAGAAAACCAAGTCGGTCAAAAGAAGAGTGGAAGACATCAATAAGG
AAGATAAAGCGGAGGAGTTGCAAGAACAGCAGAAGCCAACGAAGAAGCCG
GTCGAGGAAGTAGCTCCTTCGCCAATCAGACCATTGCTGGCATTTCTGGA
AACCCTCACCAGCAATGCTGAGGATGGCAGAATTTTGGTGGATCCCGTGG
GGGGAACCTTGAAGTACATACTCCTCGACCCCGCCGAGCAATTCGCCGAC
ATCGTTGCAGAAGCCAGAGCGATTGTGATCGCTGGCGGAACCATGCAGCC
CACTAAGGAGCTGAAGGAGCAGCTATTTACCGGTTGCCATGATCGTTTGG
TCGAGCGTTTCTACAACCACGTGGTGGCGAATGACGCGATCTTGCCCTTT
GTGATATCCAATGGCCCCAGCGGTGCTCCGCTGTCTTTTAAGTTTGCTCA
TAGAGGCAGTGCAGAAATGCTCCGGGAGCTCTCAATGATTCTTCGGAATC
TGTGCCAAGTGGTGCCGGGCGGAGTAGTTTGCTTCCTGCCGTCCTACGAG
TATTTAGACAAGGTCTACAAGTACCTGGAGCAGTCCGGCACCCTCGAGAC
GATTAGCGGCAGGAAAAGCGTGTTTCGTGAGGTCTCCGGATCGGCCGAGC
AGCTCCTGGACAACTATGCGCTGGCCATTAAGAGACCTGCTTCGTATGGA
GCCCTCCTCCTGAGTGTCGTGGGAGGAAAGCTCTCCGAAGGCCTGAACTT
CGCTGACGATCTGGGCAGAGCAGTGCTCGTAGTGGGCCTGCCGTATTCCA
ACAGCCTGTCGCCGGAGCTGCGCCAGCGAATGCAGCACCTGGACGAGAAA
CTGGGACCGGGCGCAGGCAACGAATACTACGAGAATCTCTGCGTAAAGGC
TGTCAACCAGTGCATAGGACGGGCAGTGCGCCACATCAAGGACTATGCCT
GCGTATATCTGCTGGATAAGCGTTTTGCGGATCCGAAGATACGCGGCAAA
CTGCCGAAGTGGATTTCCCGCCACATCGTGGAGGCGAACGCCGCGAATGG
AGGCTTTGGAGCCGTGCAAGGACGCACGGCTAGGTTCTTCAAGGGCAGAT
GAAAGCTTTCTAGACCAT
BS08002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-RA | 2586 | CG11403-PA | 1..2586 | 17..2602 | 12930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-RA | 2890 | CG11403-RA | 103..2688 | 17..2602 | 12930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1238028..1239782 | 1771..17 | 8775 | 100 | Minus |
| X | 23542271 | X | 1237075..1237708 | 2602..1969 | 3170 | 100 | Minus |
| X | 23542271 | X | 1237766..1237964 | 1969..1771 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:22:52 has no hits.
BS08002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:38 Download gff for
BS08002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 1..2586 | 17..2602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:39 Download gff for
BS08002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 78..2662 | 17..2601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:50 Download gff for
BS08002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 103..2687 | 17..2601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:38 Download gff for
BS08002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 69..2668 | 7..2609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:12 Download gff for
BS08002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11403-RA | 103..2687 | 17..2601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:12 Download gff for
BS08002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1237076..1237707 | 1970..2601 | 100 | <- | Minus |
| X | 1237766..1237963 | 1772..1969 | 100 | <- | Minus |
| X | 1238028..1239782 | 17..1771 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:50 Download gff for
BS08002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1131109..1131740 | 1970..2601 | 100 | <- | Minus |
| arm_X | 1131799..1131996 | 1772..1969 | 100 | <- | Minus |
| arm_X | 1132061..1133815 | 17..1771 | 100 | | Minus |
BS08002.pep Sequence
Translation from 16 to 2601
> BS08002.pep
MSQYTPNQRLDTPGAQEFGFPYSPYEIQEQLMQELFQVLERGQVGIFESP
TGTGKSLTLTCGALTWLARHEELVRTEMLARIRGVEQELAKLKEESEQSS
NWLESQGKSRAQRAELLRLQHLQALLDKQEQQLDQIRKGAKKHKRQGRVH
PGKLEELEKDLDPESDSDSEHETADGPQEAAEDRYRPVQIFFCSRTHSQL
AQIVAELRKTPHGQSVRSISLGSRQQLCGNPAVRKLKHVGLMNERCLDMA
TKKARPNPSKKSRLTAEANSRCPFKAASLVESLRDLALTEPLDIEELANE
GTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISLKGSIVIVD
EAHNLLDSVAQLHGSEISRQQLERAKVQISGYKDHFQKRFTTKNLLKINQ
IIFIIRRLLKILDQRKELQSNGCSMMRTYELTAEGDFFNIDLCELLDFCA
RTRFARKVQGRADRMEREPRPSENQAPVSTARSLILQRLASEQKLKEKTK
SVKRRVEDINKEDKAEELQEQQKPTKKPVEEVAPSPIRPLLAFLETLTSN
AEDGRILVDPVGGTLKYILLDPAEQFADIVAEARAIVIAGGTMQPTKELK
EQLFTGCHDRLVERFYNHVVANDAILPFVISNGPSGAPLSFKFAHRGSAE
MLRELSMILRNLCQVVPGGVVCFLPSYEYLDKVYKYLEQSGTLETISGRK
SVFREVSGSAEQLLDNYALAIKRPASYGALLLSVVGGKLSEGLNFADDLG
RAVLVVGLPYSNSLSPELRQRMQHLDEKLGPGAGNEYYENLCVKAVNQCI
GRAVRHIKDYACVYLLDKRFADPKIRGKLPKWISRHIVEANAANGGFGAV
QGRTARFFKGR*
BS08002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11403-PA | 861 | CG11403-PA | 1..861 | 1..861 | 4389 | 100 | Plus |
| Xpd-PA | 769 | CG9433-PA | 399..704 | 540..840 | 355 | 30.8 | Plus |
| CG4078-PB | 985 | CG4078-PB | 472..749 | 582..859 | 346 | 30.6 | Plus |
| CG4078-PA | 985 | CG4078-PA | 472..749 | 582..859 | 346 | 30.6 | Plus |
| CG4078-PB | 985 | CG4078-PB | 108..351 | 189..437 | 217 | 27.8 | Plus |
| CG4078-PA | 985 | CG4078-PA | 108..351 | 189..437 | 217 | 27.8 | Plus |
