Clone Sequence Records
BS08003.3prime Sequence
944 bp (834 high quality bases) assembled on 2006-01-06
> BS08003.3prime
ATGGTCTAGAAAGCTTCTATTTTTTCATGCTGCCCATTTTCTCTTTGCGT
TTCTTCACGTGCTTTTTCACTTTAACCTTGCGCTGCTCGGCTTTCGCATC
TTTGACGGCCTTTTTGCGAGCCTTTTTACTCTCCGGAGACTCTTCTCGTG
GTCTTGCCGAATTCTTAAACTTCTTGGCATCTTCATCGTTGTCGTTATCC
TGCGAGTTGTCTTCGTCCTCACTGCCGCTCGTTTGGGCCTCACTACCGTC
ATCCTCTTTGGCGGTCGAGGATTGCAGCACGTCTGGCTTTTGCTGCACGT
CCAGATCCGAAGTCAGACCAGTGATCTTTCCGTAGATGAGATTTTGCTGC
ACCCCTTGCTTGGCCTTGGCTACATCTCTCTCAAAATGGCGCACCTCGTC
CAACCTTTTGGGAATGTAGGTGTTCTGCCAAACAGCCTCATCGATCTTCT
CCTGAGCCGAGATGGCATCGAAATCGCGGTCCTTGATTCGCTCAGATATG
CGTTCCAGGCACTCCTCCATGTTCTCTGTGGTTATAGTCTGATCGGTGAT
GAAATCAAAAAGTTCCTTCACCGTCATCGTTGCCACCGCACGTTTTCGGA
AGAACTCGGATATGTTGGTGCAATCCTTGCGCAGGAAGTCAAAGGAATGC
GGATGATCGTGCTCCACTGACTGGCTTACATCGATAATGACCAGCTGACC
ATCCTGCAGCAGGATGTTAAACTCTGAAAGATCAGCGTGCACAAGACGGC
ATTGATTGTAAATGCGCCACATGATGACTACGCAATCCCTGTACAACTCT
CGCGCCTTTGAAGTGCTGAGCTCAACATCCTTAAGCTTTGGCGCAGGCCA
TCCGTCGCGACCGCAAAACCGCATGACCAGTACATGTGAGCGTAGCAAGA
TTGGCTCCGGTACAGGAACGCCAGCGTTGCGCATTCGCAAGTAG
BS08003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11660-PA | 1758 | CG11660-RA | 831..1758 | 944..17 | 4590 | 99.7 | Minus |
| CG11660-PB | 1758 | CG11660-RB | 831..1758 | 944..17 | 4590 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-RB | 2121 | CG11660-RB | 1006..1933 | 944..17 | 4610 | 99.8 | Minus |
| RIOK1-RA | 2049 | CG11660-RA | 934..1861 | 944..17 | 4610 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11646859..11647410 | 393..944 | 2730 | 99.6 | Plus |
| 3L | 28110227 | 3L | 11646422..11646801 | 17..396 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:50:07 has no hits.
BS08003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:29 Download gff for
BS08003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-PB | 831..1758 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:43 Download gff for
BS08003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-PB | 831..1758 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:04:02 Download gff for
BS08003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RA | 934..1871 | 8..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:44 Download gff for
BS08003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK1-RA | 934..1871 | 8..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:44 Download gff for
BS08003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11646412..11646799 | 8..394 | 98 | <- | Plus |
| 3L | 11646861..11647410 | 395..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:04:02 Download gff for
BS08003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11639512..11639899 | 8..394 | 98 | <- | Plus |
| arm_3L | 11639961..11640510 | 395..944 | 99 | | Plus |
BS08003.5prime Sequence
880 bp (878 high quality bases) assembled on 2006-01-06
> BS08003.5prime
GAAGTTATCAGTCGACATGAACAACGACAGCCACAAATATAGCGACGCCG
AGGAGGACGAAGAAGACCTGCGAAGTTCCGAGTGGACAAACGACTTCAAG
AACCTCACATTGAAGCACGAGATCTTTAAGGATATTAAACTGACACCCAA
AGAGGACTGTGATGACCTGGCACAAGTTATAGCAACCGCCAACGAAGAGG
ATGAACCGGAGGACGAAGAGCCAGAGGAATACGATGAAGACGATTACGAC
GATATCGGAGATGACTATGATACGTATGAGGAGGCCTATACGGGCTTTAA
CAAGCTTCACGTTCAGCCGCAGCTAACAAATGCCAGTGGAGGTGGCTCCG
GCGGTGGCGCTGGAGGTGCATCTGGTGGCTCACAACGCGTCAGCAGCTAC
CAACCAAACGAAAAGCTGTTGCGCCGCTACTCCGCCCGCATTAATGTAGA
AAAGTACGATCCCACCACAAATATGAGCGCGCAGGCGGCCAACCGGCTGG
TGAACTTCGATCGGCGCGATAGGACACAGGTGCGTGACAAACACGACCGA
GCCACTGCGGAACAGGTAATGGATCCACGTACCCGGATGATACTCTTCAA
GCTGCTGAATCGCGGAATGATACAGGAAATCAACGGCTGCATTTCTACGG
GCAAAGAGGCTAATGTCTATCACGCCGTTTCCAAAAATGGTGAAGAGGAG
TTTGCCATCAAGATCTACAAGACGTCCATTCTAGTATTTAAGGACCGCGA
CAAATATGTGTCAGGCGAATTCCGGTTTCGACACGGCTACTGCAAGCACA
ATCCGCGCAAAATGGTGCGTACCTGGGCGGAGAAGGAAATGCGAAACTAC
TTGCGAATGCGCAACGCTGGCGTTCCTGTA
BS08003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11660-PA | 1758 | CG11660-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG11660-PB | 1758 | CG11660-RB | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-RB | 2121 | CG11660-RB | 176..1039 | 17..880 | 4320 | 100 | Plus |
| RIOK1-RA | 2049 | CG11660-RA | 104..967 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11647377..11648180 | 880..77 | 4020 | 100 | Minus |
| 3L | 28110227 | 3L | 11648240..11648299 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:25:16 has no hits.
BS08003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:30 Download gff for
BS08003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-PB | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:44 Download gff for
BS08003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-PB | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:06 Download gff for
BS08003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RA | 96..966 | 7..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:38 Download gff for
BS08003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK1-RA | 96..966 | 7..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:38 Download gff for
BS08003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11647378..11648180 | 77..879 | 100 | <- | Minus |
| 3L | 11648240..11648307 | 7..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:06 Download gff for
BS08003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11640478..11641280 | 77..879 | 100 | <- | Minus |
| arm_3L | 11641340..11641407 | 7..76 | 94 | | Minus |
BS08003.complete Sequence
1790 bp assembled on 2007-10-17
GenBank Submission: FJ636054
> BS08003.complete
GAAGTTATCAGTCGACATGAACAACGACAGCCACAAATATAGCGACGCCG
AGGAGGACGAAGAAGACCTGCGAAGTTCCGAGTGGACAAACGACTTCAAG
AACCTCACATTGAAGCACGAGATCTTTAAGGATATTAAACTGACACCCAA
AGAGGACTGTGATGACCTGGCACAAGTTATAGCAACCGCCAACGAAGAGG
ATGAACCGGAGGACGAAGAGCCAGAGGAATACGATGAAGACGATTACGAC
GATATCGGAGATGACTATGATACGTATGAGGAGGCCTATACGGGCTTTAA
CAAGCTTCACGTTCAGCCGCAGCTAACAAATGCCAGTGGAGGTGGCTCCG
GCGGTGGCGCTGGAGGTGCATCTGGTGGCTCACAACGCGTCAGCAGCTAC
CAACCAAACGAAAAGCTGTTGCGCCGCTACTCCGCCCGCATTAATGTAGA
AAAGTACGATCCCACCACAAATATGAGCGCGCAGGCGGCCAACCGGCTGG
TGAACTTCGATCGGCGCGATAGGACACAGGTGCGTGACAAACACGACCGA
GCCACTGCGGAACAGGTAATGGATCCACGTACCCGGATGATACTCTTCAA
GCTGCTGAATCGCGGAATGATACAGGAAATCAACGGCTGCATTTCTACGG
GCAAAGAGGCTAATGTCTATCACGCCGTTTCCAAAAATGGTGAAGAGGAG
TTTGCCATCAAGATCTACAAGACGTCCATTCTAGTATTTAAGGACCGCGA
CAAATATGTGTCAGGCGAATTCCGGTTTCGACACGGCTACTGCAAGCACA
ATCCGCGCAAAATGGTGCGTACCTGGGCGGAGAAGGAAATGCGAAACTAC
TTGCGAATGCGCAACGCTGGCGTTCCTGTACCGGAGCCAATCTTGCTACG
CTCACATGTACTGGTCATGCGGTTTTGCGGTCGCGACGGATGGCCTGCGC
CAAAGCTTAAGGATGTTGAGCTCAGCACTTCAAAGGCGCGAGAGTTGTAC
AGGGATTGCGTAGTCATCATGTGGCGCATTTACAATCAATGCCGTCTTGT
GCACGCTGATCTTTCAGAGTTTAACATCCTGCTGCAGGATGGTCAGCTGG
TCATTATCGATGTAAGCCAGTCAGTGGAGCACGATCATCCGCATTCCTTT
GACTTCCTGCGCAAGGATTGCACCAACATATCCGAGTTCTTCCGAAAACG
TGCGGTGGCAACGATGACGGTGAAGGAACTTTTTGATTTCATCACCGATC
AGACTATAACCACAGAGAACATGGAGGAGTGCCTGGAACGCATATCTGAG
CGAATCAAGGACCGCGATTTCGATGCCATCTCGGCTCAGGAGAAGATCGA
TGAGGCTGTTTGGCAGAACACCTACATTCCCAAAAGGTTGGACGAGGTGC
GCCATTTTGAGAGAGATGTAGCCAAGGCCAAGCAAGGGGTGCAGCAAAAT
CTCATCTACGGAAAGATCACTGGTCTGACTTCGGATCTGGACGTGCAGCA
AAAGCCAGACGTGCTGCAATCCTCGACCGCCAAAGAGGATGACGGTAGTG
AGGCCCAAACGAGCGGCAGTGAGGACGAAGACAACTCGCAGGATAACGAC
AACGATGAAGATGCCAAGAAGTTTAAGAATTCGGCAAGACCACGAGAAGA
GTCTCCGGAGAGTAAAAAGGCTCGCAAAAAGGCCGTCAAAGATGCGAAAG
CCGAGCAGCGCAAGGTTAAAGTGAAAAAGCACGTGAAGAAACGCAAAGAG
AAAATGGGCAGCATGAAAAAATAGAAGCTTTCTAGACCAT
BS08003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-RB | 1758 | CG11660-PB | 1..1758 | 17..1774 | 8760 | 99.9 | Plus |
| RIOK1-RA | 1758 | CG11660-PA | 1..1758 | 17..1774 | 8760 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-RB | 2121 | CG11660-RB | 176..1933 | 17..1774 | 8760 | 99.9 | Plus |
| RIOK1-RA | 2049 | CG11660-RA | 104..1861 | 17..1774 | 8760 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11646859..11648180 | 1398..77 | 6580 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11646422..11646801 | 1774..1395 | 1900 | 100 | Minus |
| 3L | 28110227 | 3L | 11648240..11648299 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:52:27 has no hits.
BS08003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:39 Download gff for
BS08003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RB | 1..1758 | 17..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:18 Download gff for
BS08003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RB | 166..1941 | 7..1783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:38 Download gff for
BS08003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RA | 104..1852 | 17..1765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:16 Download gff for
BS08003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RB | 174..1922 | 17..1765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:30 Download gff for
BS08003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK1-RA | 104..1852 | 17..1765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:30 Download gff for
BS08003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11648240..11648299 | 17..76 | 100 | | Minus |
| 3L | 11646431..11646799 | 1397..1765 | 100 | <- | Minus |
| 3L | 11646861..11648180 | 77..1396 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:38 Download gff for
BS08003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11639531..11639899 | 1397..1765 | 100 | <- | Minus |
| arm_3L | 11639961..11641280 | 77..1396 | 99 | <- | Minus |
| arm_3L | 11641340..11641399 | 17..76 | 100 | | Minus |
BS08003.pep Sequence
Translation from 16 to 1773
> BS08003.pep
MNNDSHKYSDAEEDEEDLRSSEWTNDFKNLTLKHEIFKDIKLTPKEDCDD
LAQVIATANEEDEPEDEEPEEYDEDDYDDIGDDYDTYEEAYTGFNKLHVQ
PQLTNASGGGSGGGAGGASGGSQRVSSYQPNEKLLRRYSARINVEKYDPT
TNMSAQAANRLVNFDRRDRTQVRDKHDRATAEQVMDPRTRMILFKLLNRG
MIQEINGCISTGKEANVYHAVSKNGEEEFAIKIYKTSILVFKDRDKYVSG
EFRFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGVPVPEPILLRSHVLV
MRFCGRDGWPAPKLKDVELSTSKARELYRDCVVIMWRIYNQCRLVHADLS
EFNILLQDGQLVIIDVSQSVEHDHPHSFDFLRKDCTNISEFFRKRAVATM
TVKELFDFITDQTITTENMEECLERISERIKDRDFDAISAQEKIDEAVWQ
NTYIPKRLDEVRHFERDVAKAKQGVQQNLIYGKITGLTSDLDVQQKPDVL
QSSTAKEDDGSEAQTSGSEDEDNSQDNDNDEDAKKFKNSARPREESPESK
KARKKAVKDAKAEQRKVKVKKHVKKRKEKMGSMKK*
BS08003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-PB | 585 | CG11660-PB | 1..585 | 1..585 | 3063 | 100 | Plus |
| RIOK1-PA | 585 | CG11660-PA | 1..585 | 1..585 | 3063 | 100 | Plus |
| CG3008-PA | 603 | CG3008-PA | 148..602 | 66..538 | 575 | 31.9 | Plus |
| RIOK2-PA | 538 | CG11859-PA | 83..276 | 191..395 | 166 | 24.3 | Plus |
