Clone Sequence Records
BS08004.3prime Sequence
868 bp (827 high quality bases) assembled on 2006-01-06
> BS08004.3prime
ATGGTCTAGAAAGCTTTCACTTGCTCAGGCAGGCGGTATCGCTGAGGATC
GAGGCGATCAGCTGCTTGTCGCTCAGTGCCGCATGCACCTCCTCCTCGTC
CCACTGCAGCAGAACCTTGTGCAGGCGCGGCTCCTTTTTGCGCATGATTC
GCAGAATGCCTCGGGTCTCGACCAGATCCACAGTCCCAGTGAACTCCGCT
TGGTCCAGGGCCAGGATGTTGCGTTTGGCGCACACTCTCCTGTAGACCTC
GTGCAGGCGACCCATACTGATGTCTTTGTTGCGCTCGTTGCGCAGCATCA
GCACCAGGGTGCACAGCATTAGCTTTTGCTGCAGCGGAAATGATGCCTCG
ATGTCCTCCTCCAGATTCTGTGAGGCACCGTAGACCTTGTTCAGCACTGC
AGCCACTTGGGTGACCTGAACAGGCTTTAGAGTGTCTTGCTTTTCCTTGG
CCTCCACCGCATCCTTGCCCTCCAGCTGCAGGGCCTTCATATTGAACTCC
TTTTCGCCATCGCGCTTCTGCTGCTCTGCTATCTCGACCACTCGTCGTCC
AATGTCCAGGGCCCTTCGCACATCTCCACTGATCGCACTCACCTTGGCGG
CCAGCAGCTGCAGGGTCACGGGTGGAAAGACGTCCAGCACTTCCGCCTCA
GCCAGACGCGACTTGAATATCTCCACGATCTGCTGCTTGGAGTAGGGCGG
GAAGTGCATCAGTCTGGGCTTCAGCTCGCACCTTGCATTCAGTCGCATCA
GCGCACGATCTGTGAGATCCAAACTATTGGCAATGCCCACGAGCAGTATC
CTGGAGCCGGGAAGAGCTGGCCACTCGAAGATCGTGTACAACACCTCCTG
CCTGCTGGTGCAGAGCTG
BS08004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5971-PA | 1989 | CG5971-RA | 1138..1989 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 2483 | CG5971-RA | 1258..2109 | 868..17 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8632380..8632812 | 436..868 | 2165 | 100 | Plus |
| 3L | 28110227 | 3L | 8631883..8632303 | 17..437 | 2105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:40:57 has no hits.
BS08004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:32 Download gff for
BS08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1138..1989 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:45 Download gff for
BS08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1138..1989 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:07 Download gff for
BS08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 1258..2109 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:30 Download gff for
BS08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 1258..2109 | 17..868 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:30 Download gff for
BS08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8631883..8632301 | 17..435 | 100 | <- | Plus |
| 3L | 8632380..8632812 | 436..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:07 Download gff for
BS08004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8624983..8625401 | 17..435 | 100 | <- | Plus |
| arm_3L | 8625480..8625912 | 436..868 | 100 | | Plus |
BS08004.5prime Sequence
998 bp (789 high quality bases) assembled on 2006-01-06
> BS08004.5prime
GAAGTTATCAGTCGACATGGCTGCCGTACGCCGCTCCACGCGCCTTAGTA
GCATCAGCAAAGCGACCGCCGCCTCTCCGCTGCCGCCGTCGACGCAGACG
CCGCGTCGCTCGGAAGTTTGGAAACGCAGGCAGCCGAAAAAAGTGCTTGC
CGATAGCGACGAGGAGGAGGAGGTGGTGACGGCGATCTATGACCTGACCA
GCCCCGTTTCAGAGAACAACGAGAACCGCAACGTGCTCAACAAAATGGAC
AAGATCTCCAGGCGCAGGACATCGCAAGTGCAGGTGGCTCAATCGGAGCT
GCCAAAGACGCCACGCAGCACAAAGAAAACAGTCCAATCAGCTGGCAGTT
CACGGGCCAAACGTGAGGAGGAAAACCGTGAGGCCACCGCTAGATTCTTG
GAGGGCGAACAGGATTCGGAGGTGGACCCGCTTCATGGATCGCCGCCGAA
GCAGAGGAAGTTGCAGCCACTGCCACAGCACCTGATCAGTCCTTCGCGGC
TGCTGGACAGACTCAGCATCGACGAGCGCCAGGAGGAAGAGGTGGAGGCG
ACCACACACAAGACTGAAACGGCTGAGCAGCAGCCGAAACATCAAGCCAA
GGACGAGGCAAAGCCTCGGCCAAAACAGCAGGAGGATCCATTAGCGCAAA
AGCAGCAGGAGAAACCTCCAACAAAGCAGCCGAATAAAAACCAAACTAAA
GAAAAAAGCAATATCCAAACCAATGAGGAAACCCAACAGAATAACCTGCC
ATCTCCCTCACGCAACAAATACCAAAACGCCAGACGAGTGCTNCACAGCG
CCGAGACACAAAACTTGCCAGGACGTGAGTCCCAGCTCCAAGAGCTACGT
GAATTCTTTCAGCATCACCTGGAAAGCCAGACTTCCGGCAGCCTCTATGT
CTCCGGTCAGCCAGGAACAGGCAAGACCGCCTGCCTATCGCTACTGCTGA
GAGATCCCGACTTCTCCAGGCGTCTGCAACGTGTGTACATAACCTGCA
BS08004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5971-PA | 1989 | CG5971-RA | 1..842 | 17..858 | 4166 | 99.7 | Plus |
| CG5971-PA | 1989 | CG5971-RA | 848..974 | 864..990 | 610 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 2483 | CG5971-RA | 121..1102 | 17..998 | 4794 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8632968..8633949 | 998..17 | 4764 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:19:55 has no hits.
BS08004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:33 Download gff for
BS08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:47 Download gff for
BS08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:12 Download gff for
BS08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 119..1101 | 14..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:20 Download gff for
BS08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 119..1101 | 14..997 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:20 Download gff for
BS08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8632969..8633951 | 14..997 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:12 Download gff for
BS08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8626069..8627051 | 14..997 | 99 | | Minus |
BS08004.complete Sequence
2021 bp assembled on 2008-01-03
GenBank Submission: FJ636055
> BS08004.complete
GAAGTTATCAGTCGACATGGCTGCCGTACGCCGCTCCACGCGCCTTAGTA
GCATCAGCAAAGCGACCGCCGCCTCTCCGCTGCCGCCGTCGACGCAGACG
CCGCGTCGCTCGGAAGTTTGGAAACGCAGGCAGCCGAAAAAAGTGCTTGC
CGATAGCGACGAGGAGGAGGAGGTGGTGACGGCGATCTATGACCTGACCA
GCCCCGTTTCAGAGAACAACGAGAACCGCAACGTGCTCAACAAAATGGAC
AAGATCTCCAGGCGCAGGACATCGCAAGTGCAGGTGGCTCAATCGGAGCT
GCCAAAGACGCCACGCAGCACAAAGAAAACAGTCCAATCAGCTGGCAGTT
CACGGGCCAAACGTGAGGAGGAAAACCGTGAGGCCACCGCTAGATTCTTG
GAGGGCGAACAGGATTCGGAGGTGGACCCGCTTCATGGATCGCCGCCGAA
GCAGAGGAAGTTGCAGCCACTGCCACAGCACCTGATCAGTCCTTCGCGGC
TGCTGGACAGACTCAGCATCGACGAGCGCCAGGAGGAAGAGGTGGAGGCG
ACCACACACAAGACTGAAACGGCTGAGCAGCAGCCGAAACATCAAGCCAA
GGACGAGGCAAAGCCTCGGCCAAAACAGCAGGAGGATCCATTAGCGCAAA
AGCAGCAGGAGAAACCTCCAACAAAGCAGCCGAATAAAAACCAAACTAAA
GAAAAAAGCAATATCCAAACCAATGAGGAAACCCAACAGAATAACCTGCC
ATCTCCCTCACGCAACAAATACCAAAACGCCAGACGAGTGCTCAACAGCG
CCGAGACACAAAACTTGCCAGGACGTGAGTCCCAGCTCCAAGAGCTACGT
GAATTCTTCAGCAATCACCTGGAAAGCCAGACTTCCGGCAGCCTCTATGT
CTCCGGTCAGCCAGGAACAGGCAAGACCGCCTGCCTATCGCTACTGCTGA
GAGATCCCGACTTCTCCAAGCGTCTGCAACGTGTGTACATTAACTGCACC
AGCATAGCAAGTGTAGGAGCAGTTTACAAGAAACTATGCACCGAACTGCA
GCTCAAAGTCAGCGGTCGCACAGAGAGAGATCACTTGGAGGCCATTCAGC
GTCACCTAAAGACAGCAAAGCGAATGCTTCTGCTGGTGCTGGACGAGATT
GATCAGCTCTGCACCAGCAGGCAGGAGGTGTTGTACACGATCTTCGAGTG
GCCAGCTCTTCCCGGCTCCAGGATACTGCTCGTGGGCATTGCCAATAGTT
TGGATCTCACAGATCGTGCGCTGATGCGACTGAATGCAAGGTGCGAGCTG
AAGCCCAGACTGATGCACTTCCCGCCCTACTCCAAGCAGCAGATCGTGGA
GATATTCAAGTCGCGTCTGGCTGAGGCGGAAGTGCTGGACGTCTTTCCAC
CCGTGACCCTGCAGCTGCTGGCCGCCAAGGTGAGTGCGATCAGTGGAGAT
GTGCGAAGGGCCCTGGACATTGGACGACGAGTGGTCGAGATAGCAGAGCA
GCAGAAGCGCGATGGCGAAAAGGAGTTCAATATGAAGGCCCTGCAGCTGG
AGGGCAAGGATGCGGTGGAGGCCAAGGAAAAGCAAGACACTCTAAAGCCT
GTTCAGGTCACCCAAGTGGCTGCAGTGCTGAACAAGGTCTACGGTGCCTC
ACAGAATCTGGAGGAGGACATCGAGGCATCATTTCCGCTGCAGCAAAAGC
TAATGCTGTGCACCCTGGTGCTGATGCTGCGCAACGAGCGCAACAAAGAC
ATCAGTATGGGTCGCCTGCACGAGGTCTACAGGAGAGTGTGCGCCAAACG
CAACATCCTGGCCCTGGACCAAGCGGAGTTCACTGGGACTGTGGATCTGG
TCGAGACCCGAGGCATTCTGCGAATCATGCGCAAAAAGGAGCCGCGCCTG
CACAAGGTTCTGCTGCAGTGGGACGAGGAGGAGGTGCATGCGGCACTGAG
CGACAAGCAGCTGATCGCCTCGATCCTCAGCGATACCGCCTGCCTGAGCA
AGTGAAAGCTTTCTAGACCAT
BS08004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 1989 | CG5971-PA | 1..1989 | 17..2005 | 9945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 2483 | CG5971-RA | 121..2109 | 17..2005 | 9945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8632380..8633949 | 1586..17 | 7850 | 100 | Minus |
| 3L | 28110227 | 3L | 8631883..8632303 | 2005..1585 | 2105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:13:02 has no hits.
BS08004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:41 Download gff for
BS08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 1..1989 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:24 Download gff for
BS08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 133..2120 | 17..2004 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:50 Download gff for
BS08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 121..2108 | 17..2004 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:41 Download gff for
BS08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 131..2121 | 14..2005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:21 Download gff for
BS08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 121..2108 | 17..2004 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:21 Download gff for
BS08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8631884..8632301 | 1587..2004 | 100 | <- | Minus |
| 3L | 8632380..8633949 | 17..1586 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:50 Download gff for
BS08004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8624984..8625401 | 1587..2004 | 100 | <- | Minus |
| arm_3L | 8625480..8627049 | 17..1586 | 100 | | Minus |
BS08004.pep Sequence
Translation from 16 to 2004
> BS08004.pep
MAAVRRSTRLSSISKATAASPLPPSTQTPRRSEVWKRRQPKKVLADSDEE
EEVVTAIYDLTSPVSENNENRNVLNKMDKISRRRTSQVQVAQSELPKTPR
STKKTVQSAGSSRAKREEENREATARFLEGEQDSEVDPLHGSPPKQRKLQ
PLPQHLISPSRLLDRLSIDERQEEEVEATTHKTETAEQQPKHQAKDEAKP
RPKQQEDPLAQKQQEKPPTKQPNKNQTKEKSNIQTNEETQQNNLPSPSRN
KYQNARRVLNSAETQNLPGRESQLQELREFFSNHLESQTSGSLYVSGQPG
TGKTACLSLLLRDPDFSKRLQRVYINCTSIASVGAVYKKLCTELQLKVSG
RTERDHLEAIQRHLKTAKRMLLLVLDEIDQLCTSRQEVLYTIFEWPALPG
SRILLVGIANSLDLTDRALMRLNARCELKPRLMHFPPYSKQQIVEIFKSR
LAEAEVLDVFPPVTLQLLAAKVSAISGDVRRALDIGRRVVEIAEQQKRDG
EKEFNMKALQLEGKDAVEAKEKQDTLKPVQVTQVAAVLNKVYGASQNLEE
DIEASFPLQQKLMLCTLVLMLRNERNKDISMGRLHEVYRRVCAKRNILAL
DQAEFTGTVDLVETRGILRIMRKKEPRLHKVLLQWDEEEVHAALSDKQLI
ASILSDTACLSK*
BS08004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-PA | 662 | CG5971-PA | 1..662 | 1..662 | 3327 | 100 | Plus |
| Orc1-PA | 924 | CG10667-PA | 393..798 | 90..494 | 359 | 28.2 | Plus |
