Clone Sequence Records
BS08005.3prime Sequence
967 bp (852 high quality bases) assembled on 2006-01-06
> BS08005.3prime
ATGGTCTAGAAAGCTTCTATTGCGATACAATGGGGCTCTTTTTATCTATG
TCAGATATATTCGCGTTGTTCTGCGGGGCAGCTCCGTTCCCAGGGCTGGC
CGGGATGGCTCCCGCCCGGTCGATGCTCCACGGATTCGAGCCGGATATGG
GCGAGTCGGCGTGTCCAAAGCCGGTGTGATTATCGTGCTCCACGGCATTG
GTTCCGTCGTATTGCGTGTTCTCTAGCCGGGTGATCAGCCGCTCGTCCTC
CTCACCAAACTCGCCGCCCATCAGCGTCGGCTCGCCCACCACCATCACGT
CCTGGGAGGAGAGGGAGAAACTGGGACCGGAGGGGGAACGCTTCTGGTTC
GTCACAGGCGGAGTGTTCGAGTTGTTGCCACCACCCGAGTTGGAGCCCTT
CCGTTTGCGCCTCTTGTTGGGTGGTCGTTGCGGATCCTTCTTGCCGGGCG
GAGCCACCATGCGCTGCCACTTCTGGAACAACGTTGTCTTCAGGCAGTCG
CGCGGACTCAGTGCGTACGCCTTGTGCCGCGACATCAGCTCCTGCATCGG
TTCGAGGATGACGCAGAGGCGCAGATAGTTGAGGGTGGAGTTGGTGATGC
CAGCGCGCGTGATGTTCTTGGTTATTTGATCTAGCAGCATCGGGTCAGGC
GGCAGACTGGTGCCGATCACGGACCTTGGAATGAGCTCGCGGTGTCCCTT
GATGGTCATGTGCCATGACTTGATGCGCATGTAGTCGTCGTACATGAACT
CCAAGATCAGTCTTGCGTCGGCGCAGACCTTCGTGAAGAAGGGCTTGCCG
TGCTGCGTGATCACCGTGCACTGGTCGCAGTCCAACGTGATGGACGTGTT
GTGGAACGACTCCTTGGCATGCTTCAGCTGAAAGTACAGGTCCGAAACGC
CGCCCTCGTATATGCTGCGGAAGAAGCGCGGGATGAGCGTGCGCCCGATG
GTGTACCGCTTCGGTCC
BS08005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3924-PA | 1734 | Chi-RA | 784..1734 | 967..17 | 4755 | 100 | Minus |
| CG3924-PB | 1791 | Chi-RB | 841..1791 | 967..17 | 4755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 909..1861 | 967..15 | 4765 | 100 | Minus |
| Chi-RA | 2156 | CG3924-RA | 940..1892 | 967..15 | 4765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24031802..24032754 | 15..967 | 4765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 11:35:15 has no hits.
BS08005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:34 Download gff for
BS08005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 841..1791 | 17..967 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:48 Download gff for
BS08005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 841..1791 | 17..967 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:31 Download gff for
BS08005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 940..1905 | 1..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:36 Download gff for
BS08005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 940..1905 | 1..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:36 Download gff for
BS08005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24031789..24032754 | 1..967 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:31 Download gff for
BS08005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19919312..19920277 | 1..967 | 99 | | Plus |
BS08005.5prime Sequence
899 bp (898 high quality bases) assembled on 2006-01-06
> BS08005.5prime
GAAGTTATCAGTCGACATGAATCGTAGGGGTTTGAACGCTGGCAATACGA
TGACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGCGGTCTCCGAG
GGCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCAATCCGGACGG
GAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTACAACTCGGCCG
GGAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGGCAACCAGTCC
ATCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACACCTCAGTATAC
CTCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCTGTTGGTGCGC
AGAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGGCAATTTCAAT
GGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGACTCGGCCAGTT
CAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGCCAGGCCGGGC
ACTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATTCAATCCGATG
CCGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGATGATGGGCGG
GCCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGGCACAATTCCT
ACTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAAGCGGCTGCAG
CAGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGTTTACCACGGA
GTTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGCCTGGAGGACG
GACCGAAGCGGTACACCATCGGGCGCACGCTCATCCCGCGCTTCTTCCGC
AGCATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGCTGAAGCATG
BS08005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3924-PB | 1791 | Chi-RB | 57..940 | 16..899 | 4420 | 100 | Plus |
| CG3924-PA | 1734 | Chi-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 125..1008 | 16..899 | 4420 | 100 | Plus |
| Chi-RA | 2156 | CG3924-RA | 156..1039 | 16..899 | 4420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24032655..24033538 | 899..16 | 4420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:19:42 has no hits.
BS08005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:35 Download gff for
BS08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 53..940 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:50 Download gff for
BS08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3924-PB | 53..940 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:10 Download gff for
BS08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1039 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:18 Download gff for
BS08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1039 | 9..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:18 Download gff for
BS08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24032655..24033542 | 9..899 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:10 Download gff for
BS08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19920178..19921065 | 9..899 | 99 | | Minus |
BS08005.complete Sequence
1766 bp assembled on 2007-10-17
> BS08005.complete
GAAGTTATCAGTCGACATGAATCGTAGGGGTTTGAACGCTGGCAATACGA
TGACTTCTCAAGCGAACATTGACGACGGCAGCTGGAAGGCGGTCTCCGAG
GGCGGATCAATGCTGCCCGCGTCCAATTCGGCGGTCCTCAATCCGGACGG
GAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCTGCCGTACAACTCGGCCG
GGAATCCGTACCCGCCCGCCGGCCAATCCTCGCCAGCCGGCAACCAGTCC
ATCGTGTTCCAGAACTCCAACCAGCCTGGCTCGAACACACCTCAGTATAC
CTCCTCACCTGCTCCCTCGGGCTCATCGACACCCGGACCTGTTGGTGCGC
AGAACATTCCCGGCAACTACCCGCAGTCGGCGACGGCGGGCAATTTCAAT
GGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCCTCGGGACTCGGCCAGTT
CAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAACAGTGGCCAGGCCGGGC
ACTTCTCATCGCCCACGGTATTCAGCGTTGGCGGGCAATTCAATCCGATG
CCGCCGGCGTCGCCATTCGGCCACGGAGGCAACCACCCGATGATGGGCGG
GCCGCAGCAGATGGAACGCATCGACCAGGGCTTCAGGCGGCACAATTCCT
ACTTTAGCCACACGGAACACCGCGTCTTTGAGCTAAACAAGCGGCTGCAG
CAGCGCAACGAGGAGAGCGACAACTGCTGGTGGGACTCGTTTACCACGGA
GTTCTTCGAGGATGATGCCCGGCTGACCATTCTGTTCTGCCTGGAGGACG
GACCGAAGCGGTACACCATCGGGCGCACGCTCATCCCGCGCTTCTTCCGC
AGCATATACGAGGGCGGCGTTTCGGACCTGTACTTTCAGCTGAAGCATGC
CAAGGAGTCGTTCCACAACACGTCCATCACGTTGGACTGCGACCAGTGCA
CGGTGATCACGCAGCACGGCAAGCCCTTCTTCACGAAGGTCTGCGCCGAC
GCAAGACTGATCTTGGAGTTCATGTACGACGACTACATGCGCATCAAGTC
ATGGCACATGACCATCAAGGGACACCGCGAGCTCATTCCAAGGTCCGTGA
TCGGCACCAGTCTGCCGCCTGACCCGATGCTGCTAGATCAAATAACCAAG
AACATCACGCGCGCTGGCATCACCAACTCCACCCTCAACTATCTGCGCCT
CTGCGTCATCCTCGAACCGATGCAGGAGCTGATGTCGCGGCACAAGGCGT
ACGCACTGAGTCCGCGCGACTGCCTGAAGACAACGTTGTTCCAGAAGTGG
CAGCGCATGGTGGCTCCGCCCGGCAAGAAGGATCCGCAACGACCACCCAA
CAAGAGGCGCAAACGGAAGGGCTCCAACTCGGGTGGTGGCAACAACTCGA
ACACTCCGCCTGTGACGAACCAGAAGCGTTCCCCCTCCGGTCCCAGTTTC
TCCCTCTCCTCCCAGGACGTGATGGTGGTGGGCGAGCCGACGCTGATGGG
CGGCGAGTTTGGTGAGGAGGACGAGCGGCTGATCACCCGGCTAGAGAACA
CGCAATACGACGGAACCAATGCCGTGGAGCACGATAATCACACCGGCTTT
GGACACGCCGACTCGCCCATATCCGGCTCGAATCCGTGGAGCATCGACCG
GGCGGGAGCCATCCCGGCCAGCCCTGGGAACGGAGCTGCCCCGCAGAACA
ACGCGAATATATCTGACATAGATAAAAAGAGCCCCATTGTATCGCAATAG
AAGCTTTCTAGACCAT
BS08005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 1791 | CG3924-PB | 57..1791 | 16..1750 | 8675 | 100 | Plus |
| Chi-RA | 1734 | CG3924-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 125..1861 | 16..1752 | 8685 | 100 | Plus |
| Chi-RA | 2156 | CG3924-RA | 156..1892 | 16..1752 | 8685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24031802..24033538 | 1752..16 | 8685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:57:30 has no hits.
BS08005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:42 Download gff for
BS08005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 53..1791 | 9..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:21 Download gff for
BS08005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 121..1874 | 9..1766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:11 Download gff for
BS08005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 157..1890 | 17..1750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:45 Download gff for
BS08005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 126..1859 | 17..1750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:01 Download gff for
BS08005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 157..1890 | 17..1750 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:01 Download gff for
BS08005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24031804..24033537 | 17..1750 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:11 Download gff for
BS08005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19919327..19921060 | 17..1750 | 100 | | Minus |
BS08005.pep Sequence
Translation from 16 to 1749
> BS08005.pep
MNRRGLNAGNTMTSQANIDDGSWKAVSEGGSMLPASNSAVLNPDGSNQSG
FAQGGLPYNSAGNPYPPAGQSSPAGNQSIVFQNSNQPGSNTPQYTSSPAP
SGSSTPGPVGAQNIPGNYPQSATAGNFNGPVGGPFGSPSSGLGQFSRPAS
SGTPFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQME
RIDQGFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDD
ARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFH
NTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTI
KGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILE
PMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKR
KGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGE
EDERLITRLENTQYDGTNAVEHDNHTGFGHADSPISGSNPWSIDRAGAIP
ASPGNGAAPQNNANISDIDKKSPIVSQ*
BS08005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-PB | 596 | CG3924-PB | 20..596 | 1..577 | 3109 | 100 | Plus |
| Chi-PA | 577 | CG3924-PA | 1..577 | 1..577 | 3109 | 100 | Plus |
