Clone BS08006 Report

Search the DGRC for BS08006

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6a13-RA
Protein status:BS08006.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08006.3prime Sequence

936 bp (817 high quality bases) assembled on 2006-01-06

> BS08006.3prime
ATGGTCTAGAAAGCTTTTATGGTCTTTCAAGTCCTTCCATCCTCAAATGA
ACTCCCTCCTGGGTGGATATCAGGAAATTACGACTGGAAAACTTCAGCGG
GATCTGTGTTTTCTCCGACCTGCTGAACTTAAAATCCCTTAGAAGGTATA
CAAGACCCACCTTCACTTGCAGTTTACCAAAACGCTCGCCTATGCAATTT
CGAGGACCCTCGCCAAAAGGCAAATAGGCGAAAGGATGCCTAGCCTTAAT
CTCTTCTGGCTCAAAGCGACTGGGATCAAACTTTTCTGGATCGGGATAAA
GCTCTGGGTCGTGATGAATACTATGCACAGGTATTATTATCTTAGATCCC
GGCTCCAGGATTAGGTTGCTATTCGGTATCTGGTACTCCTTGGTGGAACG
CCTCAGTAAGTGAGGCAGTATAGGATACTTGCGAAGCGTCTCGGCAACCA
CTTGGTCCAGGTAGGGCATCTCCTGAACGGAGTCGTACGTGAGCTTTTGG
TTGTTGCGTTTCAAAACGGCGAGTACCTCAACCCGTAGCCTTTCTTGGAC
ATCGGGGTTGAGGGCCAGCTCATACAGGCAGAAGGACATGGTGGTGGAGG
AGGTGTCGAACCCGGCCAAAAAGAAAACCAATGCCTGGGCCGCAATCTGC
TCGAAGGAGAGGGCGTCTTTTACTCCCTCCTCACCCAATTCCATTAGTAG
TTGGATCAGGTCGTTGCGATGAATATTCTCCCGTCGCCTGTAGTCCAATG
TCTGGCGTACCGTGTCCAAGAAGAACTCACTGACCTCCGGGCGAAAAAGC
CTGAAGCGCAGCTTCCTAGCCAACTCCGGCTGGGCAAACATAAAGGCCTG
GACGAGCACCGAATGCAGGGGCTCCTGGGTCACTGATCGGCCCATTCGCC
GGAACTGCGACTCCGGATCCTGAAGACTATTACACT

BS08006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2397-PA 1482 Cyp6a13-RA 563..1482 936..17 4575 99.8 Minus
CG8687-PB 1314 Cyp6a14-RB 655..717 625..563 165 90.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a13-RA 1649 CG2397-RA 595..1514 936..17 4585 99.9 Minus
Cyp6a14-RE 2959 CG8687-RE 2164..2253 652..563 270 86.7 Minus
Cyp6a14-RC 1626 CR8687-RC 940..1029 652..563 270 86.7 Minus
Cyp6a14-RE 2959 CG8687-RE 2491..2609 328..210 190 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8571093..8572012 936..17 4585 99.9 Minus
2R 25286936 2R 8564950..8565039 563..652 270 86.7 Plus
2R 25286936 2R 8564537..8564655 210..328 190 77.3 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:19 has no hits.

BS08006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:36 Download gff for BS08006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2397-PA 563..1482 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:51 Download gff for BS08006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2397-PA 563..1482 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:42 Download gff for BS08006.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 595..1523 7..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:07 Download gff for BS08006.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 595..1523 7..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:07 Download gff for BS08006.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8571093..8572014 17..936 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:42 Download gff for BS08006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4458598..4459519 17..936 99 -> Minus

BS08006.5prime Sequence

896 bp (858 high quality bases) assembled on 2006-01-06

> BS08006.5prime
GAAGTTATCAGTCGACATGCTGACGCTCCTGGTACTCGTGTTCACCGTCG
GACTTCTGCTATATGTCAAGCTACGCTGGCATTACAGCTACTGGAGCAGA
AGGGGCGTCGCCGGAGAAAGACCCGTGTACTTCCGCGGCAATATGAGTGG
GCTGGGAAGGGACCTTCACTGGACGGATATCAACCTGCGGATCTACCGGA
AGTTTCGGGGAGTGGAGCGCTACTGCGGCTACTTCACTTTTATGACCAAG
TCGCTGTTTATCATGGATCTGGAACTGATCCGCGATATAATGATCAGGGA
CTTTTCCAGCTTCGCCGATCGAGGACTCTTCCATAATGTGCGGGACGATC
CACTGACCGGGAACCTTCTCTTCCTGGACGGACCGGAGTGGCGCTGGTTG
CGCCAGAATTTGACGCAGGTGTTCACCTCCGGCAAGATGAAATTCATGTT
CCCCAACATGGTGGAGGTGGGCGAGAAGCTAACGCAGGCGTGTCGCCTCC
AGGTCGGCGAGATAGAGGCAAAGGATCTGTGTGCCAGGTTCACCACGGAT
GTGATCGGCAGCTGTGCCTTCGGCCTCGAGTGTAATAGTCTCCAGGATCC
GGAGTCGCAGTTCCGGCGAATGGGCCGATCAGTGACCCAGGAGCCCCTGC
ATTCGGTGCTCGTCCAGGCCTTTATGTTTGCCCAGCCGGAGTTGGCTAGG
AAGCTGCGCTTCAGGCTTTTTCGCCCGGAGGTCAGTGAGTTCTTCTTGGA
CACGGTACGCCAGACATTGGACTACAGGCGACGGGAGAATATTCATCGCA
ACGACCTGATCCAACTACTAATGGAATTGGGTGAGGAGGGAGTAAAAGAC
GCCCTCTCCTTCGAGCAGATTGCGGCCCAGGCATTGGTTTTCTTTT

BS08006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2397-PA 1482 Cyp6a13-RA 1..880 17..896 4400 100 Plus
CG9438-PA 1521 Cyp6a2-RA 538..590 533..585 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a13-RA 1649 CG2397-RA 32..912 16..896 4405 100 Plus
Cyp6a14-RE 2959 CG8687-RE 1789..1868 521..600 190 84 Plus
Cyp6a14-RC 1626 CR8687-RC 565..644 521..600 190 84 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8570530..8571410 16..896 4405 100 Plus
2R 25286936 2R 6780843..6780895 585..533 190 90.6 Minus
2R 25286936 2R 8565335..8565414 600..521 190 82.5 Minus
Blast to na_te.dros performed on 2015-02-12 12:05:43 has no hits.

BS08006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:37 Download gff for BS08006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2397-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:52 Download gff for BS08006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2397-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:43 Download gff for BS08006.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 32..912 16..896 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:58 Download gff for BS08006.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 32..912 16..896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:58 Download gff for BS08006.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8570530..8571410 16..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:43 Download gff for BS08006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4458035..4458915 16..896 100   Plus

BS08006.complete Sequence

1514 bp (1514 high quality bases) assembled on 2006-01-10

> BS08006.complete
GAAGTTATCAGTCGACATGCTGACGCTCCTGGTACTCGTGTTCACCGTCG
GACTTCTGCTATATGTCAAGCTACGCTGGCATTACAGCTACTGGAGCAGA
AGGGGCGTCGCCGGAGAAAGACCCGTGTACTTCCGCGGCAATATGAGTGG
GCTGGGAAGGGACCTTCACTGGACGGATATCAACCTGCGGATCTACCGGA
AGTTTCGGGGAGTGGAGCGCTACTGCGGCTACTTCACTTTTATGACCAAG
TCGCTGTTTATCATGGATCTGGAACTGATCCGCGATATAATGATCAGGGA
CTTTTCCAGCTTCGCCGATCGAGGACTCTTCCATAATGTGCGGGACGATC
CACTGACCGGGAACCTTCTCTTCCTGGACGGACCGGAGTGGCGCTGGTTG
CGCCAGAATTTGACGCAGGTGTTCACCTCCGGCAAGATGAAATTCATGTT
CCCCAACATGGTGGAGGTGGGCGAGAAGCTAACGCAGGCGTGTCGCCTCC
AGGTCGGCGAGATAGAGGCAAAGGATCTGTGTGCCAGGTTCACCACGGAT
GTGATCGGCAGCTGTGCCTTCGGCCTCGAGTGTAATAGTCTCCAGGATCC
GGAGTCGCAGTTCCGGCGAATGGGCCGATCAGTGACCCAGGAGCCCCTGC
ATTCGGTGCTCGTCCAGGCCTTTATGTTTGCCCAGCCGGAGTTGGCTAGG
AAGCTGCGCTTCAGGCTTTTTCGCCCGGAGGTCAGTGAGTTCTTCTTGGA
CACGGTACGCCAGACATTGGACTACAGGCGACGGGAGAATATTCATCGCA
ACGACCTGATCCAACTACTAATGGAATTGGGTGAGGAGGGAGTAAAAGAC
GCCCTCTCCTTCGAGCAGATTGCGGCCCAGGCATTGGTTTTCTTTTTGGC
CGGGTTCGACACCTCCTCCACCACCATGTCCTTCTGCCTGTATGAGCTGG
CCCTCAACCCCGATGTCCAAGAAAGGCTACGGGTTGAGGTACTCGCCGTT
TTGAAACGCAACAACCAAAAGCTCACGTACGACTCCGTTCAGGAGATGCC
CTACCTGGACCAAGTGGTTGCCGAGACGCTTCGCAAGTATCCTATACTGC
CTCACTTACTGAGGCGTTCCACCAAGGAGTACCAGATACCGAATAGCAAC
CTAATCCTGGAGCCGGGATCTAAGATAATAATACCTGTGCATAGTATTCA
TCACGACCCAGAGCTTTATCCCGATCCAGAAAAGTTTGATCCCAGTCGCT
TTGAGCCAGAAGAGATTAAGGCTAGGCATCCTTTCGCCTATTTGCCTTTT
GGCGAGGGTCCTCGAAATTGCATAGGCGAGCGTTTTGGTAAACTGCAAGT
GAAGGTGGGTCTTGTATACCTTCTAAGGGATTTTAAGTTCAGCAGGTCGG
AGAAAACACAGATCCCGCTGAAGTTTTCCAGTCGTAATTTCCTGATATCC
ACCCAGGAGGGAGTTCATTTGAGGATGGAAGGACTTGAAAGACCATAAAA
GCTTTCTAGACCAT

BS08006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a13-RA 1482 CG2397-PA 1..1482 17..1498 7410 100 Plus
Cyp6a14-RE 1528 CG8687-PE 899..988 863..952 270 86.7 Plus
Cyp6a14-RC 1528 CG8687-PC 899..988 863..952 270 86.7 Plus
Cyp6a14-RE 1528 CG8687-PE 524..603 521..600 190 82.5 Plus
Cyp6a14-RE 1528 CG8687-PE 1226..1344 1187..1305 190 77.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a13-RA 1649 CG2397-RA 32..1514 16..1498 7415 100 Plus
Cyp6a14-RE 2959 CG8687-RE 2164..2253 863..952 270 86.7 Plus
Cyp6a14-RC 1626 CR8687-RC 940..1029 863..952 270 86.7 Plus
Cyp6a14-RE 2959 CG8687-RE 1789..1868 521..600 190 82.5 Plus
Cyp6a14-RE 2959 CG8687-RE 2491..2609 1187..1305 190 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8570530..8572012 16..1498 7415 100 Plus
2R 25286936 2R 8564950..8565039 952..863 270 86.7 Minus
2R 25286936 2R 6780843..6780895 585..533 190 90.6 Minus
2R 25286936 2R 8564537..8564655 1305..1187 190 77.3 Minus
2R 25286936 2R 8565335..8565414 600..521 190 82.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:57:45 has no hits.

BS08006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:50 Download gff for BS08006.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 1..1482 17..1498 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:03 Download gff for BS08006.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 29..1520 16..1508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:53 Download gff for BS08006.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 33..1512 17..1496 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:50 Download gff for BS08006.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 29..1520 16..1508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:13 Download gff for BS08006.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a13-RA 33..1512 17..1496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:13 Download gff for BS08006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8570531..8572010 17..1496 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:53 Download gff for BS08006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4458036..4459515 17..1496 100   Plus

BS08006.pep Sequence

Translation from 16 to 1497

> BS08006.pep
MLTLLVLVFTVGLLLYVKLRWHYSYWSRRGVAGERPVYFRGNMSGLGRDL
HWTDINLRIYRKFRGVERYCGYFTFMTKSLFIMDLELIRDIMIRDFSSFA
DRGLFHNVRDDPLTGNLLFLDGPEWRWLRQNLTQVFTSGKMKFMFPNMVE
VGEKLTQACRLQVGEIEAKDLCARFTTDVIGSCAFGLECNSLQDPESQFR
RMGRSVTQEPLHSVLVQAFMFAQPELARKLRFRLFRPEVSEFFLDTVRQT
LDYRRRENIHRNDLIQLLMELGEEGVKDALSFEQIAAQALVFFLAGFDTS
STTMSFCLYELALNPDVQERLRVEVLAVLKRNNQKLTYDSVQEMPYLDQV
VAETLRKYPILPHLLRRSTKEYQIPNSNLILEPGSKIIIPVHSIHHDPEL
YPDPEKFDPSRFEPEEIKARHPFAYLPFGEGPRNCIGERFGKLQVKVGLV
YLLRDFKFSRSEKTQIPLKFSSRNFLISTQEGVHLRMEGLERP*

BS08006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a13-PA 493 CG2397-PA 1..493 1..493 2577 100 Plus
Cyp6a14-PE 509 CG8687-PE 1..507 4..488 1412 53.1 Plus
Cyp6a14-PC 509 CG8687-PC 1..507 4..488 1412 53.1 Plus
Cyp6a22-PC 499 CG10240-PC 4..496 1..492 1162 45.7 Plus
Cyp6a22-PB 499 CG10240-PB 4..496 1..492 1162 45.7 Plus