Clone Sequence Records
BS08006.3prime Sequence
936 bp (817 high quality bases) assembled on 2006-01-06
> BS08006.3prime
ATGGTCTAGAAAGCTTTTATGGTCTTTCAAGTCCTTCCATCCTCAAATGA
ACTCCCTCCTGGGTGGATATCAGGAAATTACGACTGGAAAACTTCAGCGG
GATCTGTGTTTTCTCCGACCTGCTGAACTTAAAATCCCTTAGAAGGTATA
CAAGACCCACCTTCACTTGCAGTTTACCAAAACGCTCGCCTATGCAATTT
CGAGGACCCTCGCCAAAAGGCAAATAGGCGAAAGGATGCCTAGCCTTAAT
CTCTTCTGGCTCAAAGCGACTGGGATCAAACTTTTCTGGATCGGGATAAA
GCTCTGGGTCGTGATGAATACTATGCACAGGTATTATTATCTTAGATCCC
GGCTCCAGGATTAGGTTGCTATTCGGTATCTGGTACTCCTTGGTGGAACG
CCTCAGTAAGTGAGGCAGTATAGGATACTTGCGAAGCGTCTCGGCAACCA
CTTGGTCCAGGTAGGGCATCTCCTGAACGGAGTCGTACGTGAGCTTTTGG
TTGTTGCGTTTCAAAACGGCGAGTACCTCAACCCGTAGCCTTTCTTGGAC
ATCGGGGTTGAGGGCCAGCTCATACAGGCAGAAGGACATGGTGGTGGAGG
AGGTGTCGAACCCGGCCAAAAAGAAAACCAATGCCTGGGCCGCAATCTGC
TCGAAGGAGAGGGCGTCTTTTACTCCCTCCTCACCCAATTCCATTAGTAG
TTGGATCAGGTCGTTGCGATGAATATTCTCCCGTCGCCTGTAGTCCAATG
TCTGGCGTACCGTGTCCAAGAAGAACTCACTGACCTCCGGGCGAAAAAGC
CTGAAGCGCAGCTTCCTAGCCAACTCCGGCTGGGCAAACATAAAGGCCTG
GACGAGCACCGAATGCAGGGGCTCCTGGGTCACTGATCGGCCCATTCGCC
GGAACTGCGACTCCGGATCCTGAAGACTATTACACT
BS08006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2397-PA | 1482 | Cyp6a13-RA | 563..1482 | 936..17 | 4575 | 99.8 | Minus |
CG8687-PB | 1314 | Cyp6a14-RB | 655..717 | 625..563 | 165 | 90.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a13-RA | 1649 | CG2397-RA | 595..1514 | 936..17 | 4585 | 99.9 | Minus |
Cyp6a14-RE | 2959 | CG8687-RE | 2164..2253 | 652..563 | 270 | 86.7 | Minus |
Cyp6a14-RC | 1626 | CR8687-RC | 940..1029 | 652..563 | 270 | 86.7 | Minus |
Cyp6a14-RE | 2959 | CG8687-RE | 2491..2609 | 328..210 | 190 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8571093..8572012 | 936..17 | 4585 | 99.9 | Minus |
2R | 25286936 | 2R | 8564950..8565039 | 563..652 | 270 | 86.7 | Plus |
2R | 25286936 | 2R | 8564537..8564655 | 210..328 | 190 | 77.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:19 has no hits.
BS08006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:36 Download gff for
BS08006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2397-PA | 563..1482 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:51 Download gff for
BS08006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2397-PA | 563..1482 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:42 Download gff for
BS08006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 595..1523 | 7..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:07 Download gff for
BS08006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 595..1523 | 7..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:07 Download gff for
BS08006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8571093..8572014 | 17..936 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:42 Download gff for
BS08006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4458598..4459519 | 17..936 | 99 | -> | Minus |
BS08006.5prime Sequence
896 bp (858 high quality bases) assembled on 2006-01-06
> BS08006.5prime
GAAGTTATCAGTCGACATGCTGACGCTCCTGGTACTCGTGTTCACCGTCG
GACTTCTGCTATATGTCAAGCTACGCTGGCATTACAGCTACTGGAGCAGA
AGGGGCGTCGCCGGAGAAAGACCCGTGTACTTCCGCGGCAATATGAGTGG
GCTGGGAAGGGACCTTCACTGGACGGATATCAACCTGCGGATCTACCGGA
AGTTTCGGGGAGTGGAGCGCTACTGCGGCTACTTCACTTTTATGACCAAG
TCGCTGTTTATCATGGATCTGGAACTGATCCGCGATATAATGATCAGGGA
CTTTTCCAGCTTCGCCGATCGAGGACTCTTCCATAATGTGCGGGACGATC
CACTGACCGGGAACCTTCTCTTCCTGGACGGACCGGAGTGGCGCTGGTTG
CGCCAGAATTTGACGCAGGTGTTCACCTCCGGCAAGATGAAATTCATGTT
CCCCAACATGGTGGAGGTGGGCGAGAAGCTAACGCAGGCGTGTCGCCTCC
AGGTCGGCGAGATAGAGGCAAAGGATCTGTGTGCCAGGTTCACCACGGAT
GTGATCGGCAGCTGTGCCTTCGGCCTCGAGTGTAATAGTCTCCAGGATCC
GGAGTCGCAGTTCCGGCGAATGGGCCGATCAGTGACCCAGGAGCCCCTGC
ATTCGGTGCTCGTCCAGGCCTTTATGTTTGCCCAGCCGGAGTTGGCTAGG
AAGCTGCGCTTCAGGCTTTTTCGCCCGGAGGTCAGTGAGTTCTTCTTGGA
CACGGTACGCCAGACATTGGACTACAGGCGACGGGAGAATATTCATCGCA
ACGACCTGATCCAACTACTAATGGAATTGGGTGAGGAGGGAGTAAAAGAC
GCCCTCTCCTTCGAGCAGATTGCGGCCCAGGCATTGGTTTTCTTTT
BS08006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2397-PA | 1482 | Cyp6a13-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
CG9438-PA | 1521 | Cyp6a2-RA | 538..590 | 533..585 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a13-RA | 1649 | CG2397-RA | 32..912 | 16..896 | 4405 | 100 | Plus |
Cyp6a14-RE | 2959 | CG8687-RE | 1789..1868 | 521..600 | 190 | 84 | Plus |
Cyp6a14-RC | 1626 | CR8687-RC | 565..644 | 521..600 | 190 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8570530..8571410 | 16..896 | 4405 | 100 | Plus |
2R | 25286936 | 2R | 6780843..6780895 | 585..533 | 190 | 90.6 | Minus |
2R | 25286936 | 2R | 8565335..8565414 | 600..521 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:05:43 has no hits.
BS08006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:37 Download gff for
BS08006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2397-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:52 Download gff for
BS08006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2397-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:43 Download gff for
BS08006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 32..912 | 16..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:58 Download gff for
BS08006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 32..912 | 16..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:58 Download gff for
BS08006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8570530..8571410 | 16..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:43 Download gff for
BS08006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4458035..4458915 | 16..896 | 100 | | Plus |
BS08006.complete Sequence
1514 bp (1514 high quality bases) assembled on 2006-01-10
> BS08006.complete
GAAGTTATCAGTCGACATGCTGACGCTCCTGGTACTCGTGTTCACCGTCG
GACTTCTGCTATATGTCAAGCTACGCTGGCATTACAGCTACTGGAGCAGA
AGGGGCGTCGCCGGAGAAAGACCCGTGTACTTCCGCGGCAATATGAGTGG
GCTGGGAAGGGACCTTCACTGGACGGATATCAACCTGCGGATCTACCGGA
AGTTTCGGGGAGTGGAGCGCTACTGCGGCTACTTCACTTTTATGACCAAG
TCGCTGTTTATCATGGATCTGGAACTGATCCGCGATATAATGATCAGGGA
CTTTTCCAGCTTCGCCGATCGAGGACTCTTCCATAATGTGCGGGACGATC
CACTGACCGGGAACCTTCTCTTCCTGGACGGACCGGAGTGGCGCTGGTTG
CGCCAGAATTTGACGCAGGTGTTCACCTCCGGCAAGATGAAATTCATGTT
CCCCAACATGGTGGAGGTGGGCGAGAAGCTAACGCAGGCGTGTCGCCTCC
AGGTCGGCGAGATAGAGGCAAAGGATCTGTGTGCCAGGTTCACCACGGAT
GTGATCGGCAGCTGTGCCTTCGGCCTCGAGTGTAATAGTCTCCAGGATCC
GGAGTCGCAGTTCCGGCGAATGGGCCGATCAGTGACCCAGGAGCCCCTGC
ATTCGGTGCTCGTCCAGGCCTTTATGTTTGCCCAGCCGGAGTTGGCTAGG
AAGCTGCGCTTCAGGCTTTTTCGCCCGGAGGTCAGTGAGTTCTTCTTGGA
CACGGTACGCCAGACATTGGACTACAGGCGACGGGAGAATATTCATCGCA
ACGACCTGATCCAACTACTAATGGAATTGGGTGAGGAGGGAGTAAAAGAC
GCCCTCTCCTTCGAGCAGATTGCGGCCCAGGCATTGGTTTTCTTTTTGGC
CGGGTTCGACACCTCCTCCACCACCATGTCCTTCTGCCTGTATGAGCTGG
CCCTCAACCCCGATGTCCAAGAAAGGCTACGGGTTGAGGTACTCGCCGTT
TTGAAACGCAACAACCAAAAGCTCACGTACGACTCCGTTCAGGAGATGCC
CTACCTGGACCAAGTGGTTGCCGAGACGCTTCGCAAGTATCCTATACTGC
CTCACTTACTGAGGCGTTCCACCAAGGAGTACCAGATACCGAATAGCAAC
CTAATCCTGGAGCCGGGATCTAAGATAATAATACCTGTGCATAGTATTCA
TCACGACCCAGAGCTTTATCCCGATCCAGAAAAGTTTGATCCCAGTCGCT
TTGAGCCAGAAGAGATTAAGGCTAGGCATCCTTTCGCCTATTTGCCTTTT
GGCGAGGGTCCTCGAAATTGCATAGGCGAGCGTTTTGGTAAACTGCAAGT
GAAGGTGGGTCTTGTATACCTTCTAAGGGATTTTAAGTTCAGCAGGTCGG
AGAAAACACAGATCCCGCTGAAGTTTTCCAGTCGTAATTTCCTGATATCC
ACCCAGGAGGGAGTTCATTTGAGGATGGAAGGACTTGAAAGACCATAAAA
GCTTTCTAGACCAT
BS08006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a13-RA | 1482 | CG2397-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Cyp6a14-RE | 1528 | CG8687-PE | 899..988 | 863..952 | 270 | 86.7 | Plus |
Cyp6a14-RC | 1528 | CG8687-PC | 899..988 | 863..952 | 270 | 86.7 | Plus |
Cyp6a14-RE | 1528 | CG8687-PE | 524..603 | 521..600 | 190 | 82.5 | Plus |
Cyp6a14-RE | 1528 | CG8687-PE | 1226..1344 | 1187..1305 | 190 | 77.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a13-RA | 1649 | CG2397-RA | 32..1514 | 16..1498 | 7415 | 100 | Plus |
Cyp6a14-RE | 2959 | CG8687-RE | 2164..2253 | 863..952 | 270 | 86.7 | Plus |
Cyp6a14-RC | 1626 | CR8687-RC | 940..1029 | 863..952 | 270 | 86.7 | Plus |
Cyp6a14-RE | 2959 | CG8687-RE | 1789..1868 | 521..600 | 190 | 82.5 | Plus |
Cyp6a14-RE | 2959 | CG8687-RE | 2491..2609 | 1187..1305 | 190 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8570530..8572012 | 16..1498 | 7415 | 100 | Plus |
2R | 25286936 | 2R | 8564950..8565039 | 952..863 | 270 | 86.7 | Minus |
2R | 25286936 | 2R | 6780843..6780895 | 585..533 | 190 | 90.6 | Minus |
2R | 25286936 | 2R | 8564537..8564655 | 1305..1187 | 190 | 77.3 | Minus |
2R | 25286936 | 2R | 8565335..8565414 | 600..521 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:57:45 has no hits.
BS08006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:50 Download gff for
BS08006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 1..1482 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:03 Download gff for
BS08006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 29..1520 | 16..1508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:53 Download gff for
BS08006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 33..1512 | 17..1496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:50 Download gff for
BS08006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 29..1520 | 16..1508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:13 Download gff for
BS08006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a13-RA | 33..1512 | 17..1496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:13 Download gff for
BS08006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8570531..8572010 | 17..1496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:53 Download gff for
BS08006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4458036..4459515 | 17..1496 | 100 | | Plus |
BS08006.pep Sequence
Translation from 16 to 1497
> BS08006.pep
MLTLLVLVFTVGLLLYVKLRWHYSYWSRRGVAGERPVYFRGNMSGLGRDL
HWTDINLRIYRKFRGVERYCGYFTFMTKSLFIMDLELIRDIMIRDFSSFA
DRGLFHNVRDDPLTGNLLFLDGPEWRWLRQNLTQVFTSGKMKFMFPNMVE
VGEKLTQACRLQVGEIEAKDLCARFTTDVIGSCAFGLECNSLQDPESQFR
RMGRSVTQEPLHSVLVQAFMFAQPELARKLRFRLFRPEVSEFFLDTVRQT
LDYRRRENIHRNDLIQLLMELGEEGVKDALSFEQIAAQALVFFLAGFDTS
STTMSFCLYELALNPDVQERLRVEVLAVLKRNNQKLTYDSVQEMPYLDQV
VAETLRKYPILPHLLRRSTKEYQIPNSNLILEPGSKIIIPVHSIHHDPEL
YPDPEKFDPSRFEPEEIKARHPFAYLPFGEGPRNCIGERFGKLQVKVGLV
YLLRDFKFSRSEKTQIPLKFSSRNFLISTQEGVHLRMEGLERP*
BS08006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a13-PA | 493 | CG2397-PA | 1..493 | 1..493 | 2577 | 100 | Plus |
Cyp6a14-PE | 509 | CG8687-PE | 1..507 | 4..488 | 1412 | 53.1 | Plus |
Cyp6a14-PC | 509 | CG8687-PC | 1..507 | 4..488 | 1412 | 53.1 | Plus |
Cyp6a22-PC | 499 | CG10240-PC | 4..496 | 1..492 | 1162 | 45.7 | Plus |
Cyp6a22-PB | 499 | CG10240-PB | 4..496 | 1..492 | 1162 | 45.7 | Plus |