Clone Sequence Records
BS08008.3prime Sequence
648 bp (647 high quality bases) assembled on 2006-01-06
> BS08008.3prime
ATGGTCTAGAAAGCTTTTACAGGGTCTTGTCGAACAGGAACTCGCCCAGT
TCGCCGTTGGTGTCCATCATCTTCTTGAGAGTGGTCAGCTTGCCGGCGAG
CTCGCGCTGTCCGTGGAGCTGCTCCTCCAGATAGACACCGGTCAGGTAGT
CCACCAGGTGGTAGTGGTTGTAGGGCTTGTTCTCGCAGGTCTGGATCAGC
TTGCGGATGGACTTGGTCACCTTGATCTCCAGGTCGAGGGCGTCGGACAG
GGCGGCGGCACCATCGGTCCACTCCTGCTTGGCCACAGTCGGCACATTGA
TCAGATCGCTGACTCCCTCGGTCAGTTGACCGCGCATGGACAGGTACTCC
ACCAGCTTGGATCCGTGCTCACGTTCCTCCTTGGCGGCCTTGAAGAAGTG
CTCGGCGAATCCAGGGCGGTTGACGGTGTCGCGGGAGAAGTAGGCGCCCA
TGGCCAAGTACTGGTAGGAGGCGTTGATCTCCTCCTGGATCTGATTGCGC
ATGCCCTTTATGCAGGCATCCTTCATGTCCACCCAGTCCTTGGTAATCTC
AGGAACAGCCAGGGAGCACTTGAAATCTCCATAGGCCTGGGCCACCACGG
CCAACAGGAGCAGGCTAGCAATTAGTTTCACCATGTCGACTGATAACT
BS08008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2216-PA | 618 | Fer1HCH-RA | 1..618 | 634..17 | 3090 | 100 | Minus |
| CG2216-PB | 618 | Fer1HCH-RB | 1..618 | 634..17 | 3090 | 100 | Minus |
| CG2216-PC | 618 | Fer1HCH-RC | 1..618 | 634..17 | 3090 | 100 | Minus |
| CG2216-PD | 618 | Fer1HCH-RD | 1..618 | 634..17 | 3090 | 100 | Minus |
| CG2216-PE | 366 | Fer1HCH-RE | 1..345 | 634..290 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RD | 1187 | CG2216-RD | 159..776 | 634..17 | 3090 | 100 | Minus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..816 | 634..17 | 3090 | 100 | Minus |
| Fer1HCH-RB | 1135 | CG2216-RB | 107..724 | 634..17 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386319..30386596 | 290..567 | 1390 | 100 | Plus |
| 3R | 32079331 | 3R | 30385984..30386257 | 17..290 | 1370 | 100 | Plus |
| 3R | 32079331 | 3R | 30387463..30387530 | 567..634 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:50:11 has no hits.
BS08008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:38 Download gff for
BS08008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PD | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:53 Download gff for
BS08008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PD | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:04:04 Download gff for
BS08008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..724 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:54 Download gff for
BS08008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..724 | 17..634 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:54 Download gff for
BS08008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30386319..30386596 | 290..567 | 100 | <- | Plus |
| 3R | 30387464..30387530 | 568..634 | 100 | | Plus |
| 3R | 30385984..30386256 | 17..289 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:04:04 Download gff for
BS08008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26211706..26211978 | 17..289 | 100 | <- | Plus |
| arm_3R | 26212041..26212318 | 290..567 | 100 | <- | Plus |
| arm_3R | 26213186..26213252 | 568..634 | 100 | | Plus |
BS08008.5prime Sequence
648 bp (647 high quality bases) assembled on 2006-01-06
> BS08008.5prime
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCC
CTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAA
GCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGG
ACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAG
CTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGA
ACTGGGCGAGTTCCTGTTCGACAAGACCCTGTAAAAGCTTTCTAGACC
BS08008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2216-PA | 618 | Fer1HCH-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
| CG2216-PB | 618 | Fer1HCH-RB | 1..618 | 17..634 | 3090 | 100 | Plus |
| CG2216-PC | 618 | Fer1HCH-RC | 1..618 | 17..634 | 3090 | 100 | Plus |
| CG2216-PD | 618 | Fer1HCH-RD | 1..618 | 17..634 | 3090 | 100 | Plus |
| CG2216-PE | 366 | Fer1HCH-RE | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RD | 1187 | CG2216-RD | 159..776 | 17..634 | 3090 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..816 | 17..634 | 3090 | 100 | Plus |
| Fer1HCH-RB | 1135 | CG2216-RB | 107..724 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386319..30386596 | 361..84 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 30385984..30386257 | 634..361 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:33:03 has no hits.
BS08008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:39 Download gff for
BS08008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PD | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:54 Download gff for
BS08008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-PD | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:05 Download gff for
BS08008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..724 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:19 Download gff for
BS08008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..724 | 17..634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:19 Download gff for
BS08008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30387464..30387530 | 17..83 | 100 | | Minus |
| 3R | 30385984..30386256 | 362..634 | 100 | <- | Minus |
| 3R | 30386319..30386596 | 84..361 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:05 Download gff for
BS08008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26211706..26211978 | 362..634 | 100 | <- | Minus |
| arm_3R | 26212041..26212318 | 84..361 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BS08008.complete Sequence
650 bp (650 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636056
> BS08008.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCC
CTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAA
GCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGG
ACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAG
CTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGA
ACTGGGCGAGTTCCTGTTCGACAAGACCCTGTAAAAGCTTTCTAGACCAT
BS08008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RD | 618 | CG2216-PD | 1..618 | 17..634 | 3090 | 100 | Plus |
| Fer1HCH-RC | 618 | CG2216-PC | 1..618 | 17..634 | 3090 | 100 | Plus |
| Fer1HCH-RB | 618 | CG2216-PB | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RD | 1187 | CG2216-RD | 159..776 | 17..634 | 3090 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..816 | 17..634 | 3090 | 100 | Plus |
| Fer1HCH-RB | 1135 | CG2216-RB | 107..724 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386319..30386596 | 361..84 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 30385984..30386257 | 634..361 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:56:34 has no hits.
BS08008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:39 Download gff for
BS08008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RC | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:50 Download gff for
BS08008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 371..988 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:44 Download gff for
BS08008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..722 | 17..632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:25 Download gff for
BS08008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..722 | 17..632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:25 Download gff for
BS08008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30385986..30386256 | 362..632 | 100 | <- | Minus |
| 3R | 30386319..30386596 | 84..361 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:44 Download gff for
BS08008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26211708..26211978 | 362..632 | 100 | <- | Minus |
| arm_3R | 26212041..26212318 | 84..361 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BS08008.pep Sequence
Translation from 16 to 633
> BS08008.pep
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTC
ENKPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL
FDKTL*
BS08008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-PD | 205 | CG2216-PD | 1..205 | 1..205 | 1055 | 100 | Plus |
| Fer1HCH-PC | 205 | CG2216-PC | 1..205 | 1..205 | 1055 | 100 | Plus |
| Fer1HCH-PB | 205 | CG2216-PB | 1..205 | 1..205 | 1055 | 100 | Plus |
| Fer1HCH-PA | 205 | CG2216-PA | 1..205 | 1..205 | 1055 | 100 | Plus |
| Fer1HCH-PI | 245 | CG2216-PI | 1..245 | 1..205 | 1004 | 83.7 | Plus |
