Clone BS08009 Report

Search the DGRC for BS08009

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG7185-RA
Protein status:BS08009.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08009.3prime Sequence

927 bp (822 high quality bases) assembled on 2006-01-06

> BS08009.3prime
ATGGTCTAGAAAGCTTTCAATGCCGGGAACGGTGCTCCTCACGCCTGTCG
CGATCACGCTCCCGCTCGCGGTCGCGGTCTCGATCGCGGTCGCGTCGCTC
ACGGTCCGAGGAGCGGTACCTTTCCCGATCCTCGTAGTAGCGCTTCGATG
ATGGCGCCTCCGCTGCTTCGGCGACTACGGGTTCCGGCGACTTTCGTGGA
CGCACCGATCGGCTGTCATCCCTGTAGTGATCTGGAGCCTGGCGTTCACG
TTCTCTACTGCGAGACCTCTCTCTGTAGCTTCCGCCATCCCGTTCACGCT
CACGATCCCGATCGCGTTCCCGCTCCCGAGATCGCTCGCGGTACCTGGAC
GTGGAACGCTCACGTCGCTGTCGGCTGCGATGAGATCGCTCCCTCGACCG
CGACCTTTCGCGCCTATTGTAGCTCTTGGCCTCGATGCCATGCAACGTGT
CCTGCAGCGAGCTAATCAGAATTTTGCATCGCTCATCGTGCGCTACCTTG
GACTGTTTGATCAGTGAAATGGCTGTGACCAGTGTCTCGATGGCGCTCGA
GTATTCACCAGCGGCTGCATCAGAAACAGCTCTGGCGATCGCCGAACTGC
TGACTGTGCGATTTCTGCTCATCACCTCCTCGAACTCCACCTCCGTCAGT
TGCGGACCCATCTGCTGCGGATCGGGGAAGGGACCTGGTGGCTTACCCTG
CGGTGGCGGCCACGGACCACGTGGTCCATGCTGGGCGAACTGGGGTGGCG
GTCCATGCTGTGGCGTCATGTTCATGCCCTGTTGCGGTGGCATATTCATG
CCTGGCTGTGGACCTGGTGCTCCGTGGGGCGGGCCACCCATGCCCGGATG
CTGGGCAGGACCACCAGGCTGGTTAAAGAATGCTGGGTTCACGTGGGGTG
CGGGTGCGCCGTGTGGTCCGCCCGGAC

BS08009.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-PA 1959 CG7185-RA 1049..1959 927..17 4555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RB 2721 CG7185-RB 1273..2183 927..17 4555 100 Minus
CG7185-RA 2862 CG7185-RA 1414..2324 927..17 4555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8312284..8312629 582..927 1730 100 Plus
3L 28110227 3L 8311774..8312076 282..584 1515 100 Plus
3L 28110227 3L 8311031..8311230 17..216 1000 100 Plus
3L 28110227 3L 8311647..8311716 213..282 350 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:06:47 has no hits.

BS08009.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:40 Download gff for BS08009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1049..1959 17..927 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:56 Download gff for BS08009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1049..1959 17..927 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:45 Download gff for BS08009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 1414..2328 13..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:46 Download gff for BS08009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 1414..2328 13..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:46 Download gff for BS08009.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8311027..8311226 13..212 99 <- Plus
3L 8311647..8311715 213..281 100 <- Plus
3L 8311774..8312073 282..581 100 <- Plus
3L 8312284..8312629 582..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:45 Download gff for BS08009.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8304127..8304326 13..212 99 <- Plus
arm_3L 8304747..8304815 213..281 100 <- Plus
arm_3L 8304874..8305173 282..581 100 <- Plus
arm_3L 8305384..8305729 582..927 100   Plus

BS08009.5prime Sequence

948 bp (802 high quality bases) assembled on 2006-01-06

> BS08009.5prime
GAAGTTATCAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGG
ACCTCGACAAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGAT
GGAGTAGACCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTC
AGGTGGCGGGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAG
GCTCCGGGGAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTAC
CATCAGAGCAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCT
TTATGTGGGCAATCTCACATGGTGGACCACTGACCAGGATATCGCCAATT
CGCTGCGAGACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAG
AACAGGGCCAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTC
AGAATCTAGCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGC
ACGGCCAAGCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAA
TTCGAGAGTCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGG
ACCGCCCAGGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCA
CCGGACATCCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCG
CGCGGGATGAACTCCATCATGCAGCCGGGCCAGTACCGACCGCAGCACAT
GTCGCAGGTTCCCCAGGTGGGCGGACCCAACTCANGACCTCCACGAATGC
AGCCGCTCATGCATCCGCAAGGCGGGCTCATGGGGAACCAACAGCCGCCA
CCCCGGTATCCGTCAGCGCAGGGCCAATGGCCAGGTCAGCGGCCAGGCGG
GCCGCGACCAGGTCCACCGACGGGACACCGCAGCGACAATGGTTCAAG

BS08009.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-PA 1959 CG7185-RA 1..904 17..920 4451 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RA 2862 CG7185-RA 364..1299 15..948 4529 99 Plus
CG7185-RB 2721 CG7185-RB 364..1151 15..802 3929 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8313957..8314679 802..80 3604 99.9 Minus
3L 28110227 3L 8313016..8313153 937..801 580 96.4 Minus
3L 28110227 3L 8315071..8315139 83..15 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:08:47 has no hits.

BS08009.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:41 Download gff for BS08009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1..934 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:26:58 Download gff for BS08009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-PA 1..934 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:52 Download gff for BS08009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 361..1299 12..948 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:30 Download gff for BS08009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 361..1299 12..948 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:30 Download gff for BS08009.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8313003..8313151 803..948 94 <- Minus
3L 8313957..8314676 83..802 99 <- Minus
3L 8315072..8315142 12..82 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:52 Download gff for BS08009.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8306103..8306251 803..948 94 <- Minus
arm_3L 8307057..8307776 83..802 99 <- Minus
arm_3L 8308172..8308242 12..82 98   Minus

BS08009.complete Sequence

1991 bp assembled on 2008-01-03

GenBank Submission: FJ636057

> BS08009.complete
GAAGTTATCAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGG
ACCTCGACAAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGAT
GGAGTAGACCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTC
AGGTGGCGGGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAG
GCTCCGGGGAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTAC
CATCAGAGCAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCT
TTATGTGGGCAATCTCACATGGTGGACCACTGACCAGGATATCGCCAATT
CGCTGCGAGACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAG
AACAGGGCCAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTC
AGAATCTAGCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGC
ACGGCCAAGCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAA
TTCGAGAGTCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGG
ACCGCCCAGGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCA
CCGGACATCCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCG
CGCGGGATGAACTCCATCATGCAGCCGGGCCAGTACCGACCGCAGCACAT
GTCGCAGGTTCCCCAGGTGGGCGGACCCAACTCAGGACCTCCACGAATGC
AGCCGCCAATGCATCCGCAAGGCGGGCTCATGGGGAACCAACAGCCGCCA
CCCCGGTATCCGTCAGCGCAGGGCCAATGGCCAGGTCAGCGGCCAGGCGG
GCCGCGACCAGGTCCACCGAACGGACCACCGCAGCGACCAATGTTCCAAG
GAGGCCCAATGGGCATGCCCGTCAGGGGTCCGGCAGGTCCCGACTGGCGT
CGTCCACCCATGCACGGTGGTTTCCCGCCGCAAGGTCCGCCACGTGGCCT
TCCCCCAGCACCAGGTCCGGGCGGACCACACGGCGCACCCGCACCCCACG
TGAACCCAGCATTCTTTAACCAGCCTGGTGGTCCTGCCCAGCATCCGGGC
ATGGGTGGCCCGCCCCACGGAGCACCAGGTCCACAGCCAGGCATGAATAT
GCCACCGCAACAGGGCATGAACATGACGCCACAGCATGGACCGCCACCCC
AGTTCGCCCAGCATGGACCACGTGGTCCGTGGCCGCCACCGCAGGGTAAG
CCACCAGGTCCCTTCCCCGATCCGCAGCAGATGGGTCCGCAACTGACGGA
GGTGGAGTTCGAGGAGGTGATGAGCAGAAATCGCACAGTCAGCAGTTCGG
CGATCGCCAGAGCTGTTTCTGATGCAGCCGCTGGTGAATACTCGAGCGCC
ATCGAGACACTGGTCACAGCCATTTCACTGATCAAACAGTCCAAGGTAGC
GCACGATGAGCGATGCAAAATTCTGATTAGCTCGCTGCAGGACACGTTGC
ATGGCATCGAGGCCAAGAGCTACAATAGGCGCGAAAGGTCGCGGTCGAGG
GAGCGATCTCATCGCAGCCGACAGCGACGTGAGCGTTCCACGTCCAGGTA
CCGCGAGCGATCTCGGGAGCGGGAACGCGATCGGGATCGTGAGCGTGAAC
GGGATGGCGGAAGCTACAGAGAGAGGTCTCGCAGTAGAGAACGTGAACGC
CAGGCTCCAGATCACTACAGGGATGACAGCCGATCGGTGCGTCCACGAAA
GTCGCCGGAACCCGTAGTCGCCGAAGCAGCGGAGGCGCCATCATCGAAGC
GCTACTACGAGGATCGGGAAAGGTACCGCTCCTCGGACCGTGAGCGACGC
GACCGCGATCGAGACCGCGACCGCGAGCGGGAGCGTGATCGCGACAGGCG
TGAGGAGCACCGTTCCCGGCATTGAAAGCTTTCTAGACCAT

BS08009.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RA 1959 CG7185-PA 1..1959 17..1975 9795 100 Plus
CG7185-RB 1818 CG7185-PB 786..1818 943..1975 5165 100 Plus
CG7185-RB 1818 CG7185-PB 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-RA 2862 CG7185-RA 364..2324 15..1975 9805 100 Plus
CG7185-RB 2721 CG7185-RB 1151..2183 943..1975 5165 100 Plus
CG7185-RB 2721 CG7185-RB 364..1151 15..802 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8313957..8314679 802..80 3615 100 Minus
3L 28110227 3L 8312284..8312751 1410..943 2340 100 Minus
3L 28110227 3L 8311774..8312076 1710..1408 1515 100 Minus
3L 28110227 3L 8311031..8311230 1975..1776 1000 100 Minus
3L 28110227 3L 8313011..8313153 943..801 715 100 Minus
3L 28110227 3L 8311647..8311716 1779..1710 350 100 Minus
3L 28110227 3L 8315071..8315139 83..15 345 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:15:21 has no hits.

BS08009.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:43 Download gff for BS08009.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 1..1959 17..1975 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:45 Download gff for BS08009.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 351..2308 17..1974 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:00 Download gff for BS08009.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 366..2323 17..1974 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:44 Download gff for BS08009.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 346..2313 12..1979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:02 Download gff for BS08009.complete
Subject Subject Range Query Range Percent Splice Strand
CG7185-RA 366..2323 17..1974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:02 Download gff for BS08009.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8311032..8311226 1780..1974 100 <- Minus
3L 8311647..8311715 1711..1779 100 <- Minus
3L 8311774..8312073 1411..1710 100 <- Minus
3L 8312284..8312750 944..1410 100 <- Minus
3L 8313011..8313151 803..943 100 <- Minus
3L 8313957..8314676 83..802 100 <- Minus
3L 8315072..8315137 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:00 Download gff for BS08009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8304132..8304326 1780..1974 100 <- Minus
arm_3L 8304747..8304815 1711..1779 100 <- Minus
arm_3L 8304874..8305173 1411..1710 100 <- Minus
arm_3L 8305384..8305850 944..1410 100 <- Minus
arm_3L 8306111..8306251 803..943 100 <- Minus
arm_3L 8307057..8307776 83..802 100 <- Minus
arm_3L 8308172..8308237 17..82 100   Minus

BS08009.pep Sequence

Translation from 16 to 1974

> BS08009.pep
MADVVLDLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGG
GTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNL
TWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLR
AVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGPPRGP
APPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQYRPQHMSQVPQ
VGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGP
PNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPG
PGGPHGAPAPHVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQG
MNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLTEVEFEE
VMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERC
KILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSR
ERERDRDRERERDGGSYRERSRSRERERQAPDHYRDDSRSVRPRKSPEPV
VAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRREEHRS
RH*

BS08009.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7185-PA 652 CG7185-PA 1..652 1..652 3574 100 Plus
CG7185-PB 605 CG7185-PB 1..605 1..652 3043 89.1 Plus
CG15021-PA 420 CG15021-PA 112..389 187..448 274 34.1 Plus
pygo-PA 815 CG11518-PA 346..740 32..442 274 30 Plus
CG5514-PC 1109 CG5514-PC 352..727 258..650 270 25.4 Plus
CG15021-PA 420 CG15021-PA 183..418 171..433 251 34.4 Plus
CG15021-PA 420 CG15021-PA 11..335 140..441 250 29.1 Plus
pygo-PA 815 CG11518-PA 122..369 205..436 240 34.1 Plus
pygo-PA 815 CG11518-PA 153..444 189..418 218 31.8 Plus
pygo-PA 815 CG11518-PA 327..627 183..440 217 30.1 Plus
CG15021-PA 420 CG15021-PA 42..236 227..444 216 33 Plus
pygo-PA 815 CG11518-PA 103..280 249..441 174 32.8 Plus