Clone Sequence Records
BS08011.3prime Sequence
870 bp (869 high quality bases) assembled on 2006-01-06
> BS08011.3prime
ATGGTCTAGAAAGCTTTTAAGTCTGAACGGAGATCCGCTCCAGTCGGGGA
GCGCTGCGGAACTTGGTCCACCACCAGAACCAGGCGCACGAAAATCCCAC
AGCCAAGGTGGTGTAATACAAAATAGTAGCCAGGCTCCACTTCTTCTTCT
TGTGACTCTCGTTGCCCTGCACTTTCTTCTGGCTCCTTGCGTTCTGGGCA
TTAGCTTCGATTTTCGCGAGATCCTTGGCAATCTCTTCGGTGATCTGATT
CACGCTTTTTAGAGTTTCCTGGGCAAAGCAGCTGGCATATCGTTTGTCGC
CCACCACGACGTCCTCGGGAGTGGAGACCTGCAGCTTGTAGTTGGTGGCC
GCTAAAGAAGCGCGCAGGGACATAAAGTGGTTGCCAGCATTGCCCAGAAT
CTGATTGTTGTAGTTTTCGGCTTCAGGATGGTTGCAAATGTATTCGTAAC
TGGGATTCTGGTTGGGAATCTTTTCGAACATCTCCAGGAGCTGTTGCCGT
TGCTTTCGACACTTGAACCCGAAGAGTTCCAAATCTTCGTCGGTGAGAGA
GGCCAAATCCAGATAGTTAATGTTCTCGGCAATAAGTTTGTCCACACAGG
TGCTGGCGTAGTCCGTTTCCACGCTGGTAGAGCACAGTAGACCGTTGAGG
ATCTCCCTCTCCCGGCGTGTGTCCCTGTGAGCCTTTTGGCGAACCCAAGG
ACGTCGATTGTAGCCCAGGAAAGCACTGTCCAATTCCTTCTGCTCGGTGT
GCGAGTGAAAGTTCTTTGTGGCCTCAAACTGAATGGTCGGCGGAACCTTG
GCCATCGCCACCAAGGGGACATCCCCCGCGGACATTGTGTGCGTCTTCGT
TGCCATGTCGACTGATAACT
BS08011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10880-PA | 840 | CG10880-RA | 1..840 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10880-RA | 1285 | CG10880-RA | 87..928 | 856..15 | 4210 | 100 | Minus |
CG10880-RB | 1282 | CG10880-RB | 87..925 | 856..15 | 4155 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2215515..2216225 | 146..856 | 3555 | 100 | Plus |
2L | 23513712 | 2L | 2215329..2215461 | 15..147 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:10:48 has no hits.
BS08011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:44 Download gff for
BS08011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-PA | 1..840 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:02 Download gff for
BS08011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-PA | 1..840 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:32 Download gff for
BS08011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 82..928 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:04 Download gff for
BS08011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 82..928 | 15..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:04 Download gff for
BS08011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2215329..2215459 | 15..145 | 100 | <- | Plus |
2L | 2215515..2216230 | 146..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:32 Download gff for
BS08011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2215329..2215459 | 15..145 | 100 | <- | Plus |
arm_2L | 2215515..2216230 | 146..863 | 99 | | Plus |
BS08011.5prime Sequence
870 bp (847 high quality bases) assembled on 2006-01-06
> BS08011.5prime
GAAGTTATCAGTCGACATGGCAACGAAGACGCACACAATGTCCGCGGGGG
ATGTCCCCTTGGTGGCGATGGCCAAGGTTCCGCCGACCATTCAGTTTGAG
GCCACAAAGAACTTTCACTCGCACACCGAGCAGAAGGAATTGGACAGTGC
TTTCCTGGGCTACAATCGACGTCCTTGGGTTCGCCAAAAGGCTCACAGGG
ACACACGCCGGGAGAGGGAGATCCTCAACGGTCTACTGTGCTCTACCAGC
GTGGAAACGGACTACGCCAGCACCTGTGTGGACAAACTTATTGCCGAGAA
CATTAACTATCTGGATTTGGCCTCTCTCACCGACGAAGATTTGGAACTCT
TCGGGTTCAAGTGTCGAAAGCAACGGCAACAGCTCCTGGAGATGTTCGAA
AAGATTCCCAACCAGAATCCCAGTTACGAATACATTTGCAACCATCCTGA
AGCCGAAAACTACAACAATCAGATTCTGGGCAATGCTGGCAACCACTTTA
TGTCCCTGCGCGCTTCTTTAGCGGCCACCAACTACAAGCTGCAGGTCTCC
ACTCCCGAGGACGTCGTGGTGGGCGACAAACGATATGCCAGCTGCTTTGC
CCAGGAAACTCTAAAAAGCGTGAATCAGATCACCGAAGAGATTGCCAAGG
ATCTCGCGAAAATCGAAGCTAATGCCCAGAACGCAAGGAGCCAGAAGAAA
GTGCAGGGCAACGAGAGTCACAAGAAGAAGAAGTGGAGCCTGGCTACTAT
TTTGTATTACACCACCTTGGCTGTGGGATTTTCGTGCGCCTGGTTCTGGT
GGTGGACCAAGTTCCGCAGCGCTCCCCGACTGGAGCGGATCTCCGTTCAG
ACTTAAAAGCTTTCTAGACC
BS08011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10880-PA | 840 | CG10880-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10880-RA | 1285 | CG10880-RA | 87..928 | 17..858 | 4210 | 100 | Plus |
CG10880-RB | 1282 | CG10880-RB | 87..925 | 17..858 | 4155 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2215515..2216225 | 727..17 | 3555 | 100 | Minus |
2L | 23513712 | 2L | 2215329..2215461 | 858..726 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:03:05 has no hits.
BS08011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:45 Download gff for
BS08011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:04 Download gff for
BS08011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:53:26 Download gff for
BS08011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 82..928 | 10..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:51 Download gff for
BS08011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 82..928 | 10..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:51 Download gff for
BS08011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2215329..2215459 | 728..858 | 100 | <- | Minus |
2L | 2215515..2216230 | 10..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:53:26 Download gff for
BS08011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2215329..2215459 | 728..858 | 100 | <- | Minus |
arm_2L | 2215515..2216230 | 10..727 | 99 | | Minus |
BS08011.complete Sequence
872 bp (872 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636058
> BS08011.complete
GAAGTTATCAGTCGACATGGCAACGAAGACGCACACAATGTCCGCGGGGG
ATGTCCCCTTGGTGGCGATGGCCAAGGTTCCGCCGACCATTCAGTTTGAG
GCCACAAAGAACTTTCACTCGCACACCGAGCAGAAGGAATTGGACAGTGC
TTTCCTGGGCTACAATCGACGTCCTTGGGTTCGCCAAAAGGCTCACAGGG
ACACACGCCGGGAGAGGGAGATCCTCAACGGTCTACTGTGCTCTACCAGC
GTGGAAACGGACTACGCCAGCACCTGTGTGGACAAACTTATTGCCGAGAA
CATTAACTATCTGGATTTGGCCTCTCTCACCGACGAAGATTTGGAACTCT
TCGGGTTCAAGTGTCGAAAGCAACGGCAACAGCTCCTGGAGATGTTCGAA
AAGATTCCCAACCAGAATCCCAGTTACGAATACATTTGCAACCATCCTGA
AGCCGAAAACTACAACAATCAGATTCTGGGCAATGCTGGCAACCACTTTA
TGTCCCTGCGCGCTTCTTTAGCGGCCACCAACTACAAGCTGCAGGTCTCC
ACTCCCGAGGACGTCGTGGTGGGCGACAAACGATATGCCAGCTGCTTTGC
CCAGGAAACTCTAAAAAGCGTGAATCAGATCACCGAAGAGATTGCCAAGG
ATCTCGCGAAAATCGAAGCTAATGCCCAGAACGCAAGGAGCCAGAAGAAA
GTGCAGGGCAACGAGAGTCACAAGAAGAAGAAGTGGAGCCTGGCTACTAT
TTTGTATTACACCACCTTGGCTGTGGGATTTTCGTGCGCCTGGTTCTGGT
GGTGGACCAAGTTCCGCAGCGCTCCCCGACTGGAGCGGATCTCCGTTCAG
ACTTAAAAGCTTTCTAGACCAT
BS08011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10880-RA | 840 | CG10880-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
CG10880-RB | 837 | CG10880-PB | 1..837 | 17..856 | 4120 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10880-RA | 1285 | CG10880-RA | 87..928 | 17..858 | 4210 | 100 | Plus |
CG10880-RB | 1282 | CG10880-RB | 87..925 | 17..858 | 4130 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2215515..2216225 | 727..17 | 3555 | 100 | Minus |
2L | 23513712 | 2L | 2215329..2215461 | 858..726 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:07:01 has no hits.
BS08011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:51 Download gff for
BS08011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:05 Download gff for
BS08011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 69..915 | 10..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:06 Download gff for
BS08011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 87..924 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:51 Download gff for
BS08011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 69..915 | 10..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:19 Download gff for
BS08011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10880-RA | 87..924 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:19 Download gff for
BS08011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2215333..2215459 | 728..854 | 100 | <- | Minus |
2L | 2215515..2216225 | 17..727 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:06 Download gff for
BS08011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2215333..2215459 | 728..854 | 100 | <- | Minus |
arm_2L | 2215515..2216225 | 17..727 | 100 | | Minus |
BS08011.pep Sequence
Translation from 16 to 855
> BS08011.pep
MATKTHTMSAGDVPLVAMAKVPPTIQFEATKNFHSHTEQKELDSAFLGYN
RRPWVRQKAHRDTRREREILNGLLCSTSVETDYASTCVDKLIAENINYLD
LASLTDEDLELFGFKCRKQRQQLLEMFEKIPNQNPSYEYICNHPEAENYN
NQILGNAGNHFMSLRASLAATNYKLQVSTPEDVVVGDKRYASCFAQETLK
SVNQITEEIAKDLAKIEANAQNARSQKKVQGNESHKKKKWSLATILYYTT
LAVGFSCAWFWWWTKFRSAPRLERISVQT*
BS08011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10880-PA | 279 | CG10880-PA | 1..279 | 1..279 | 1468 | 100 | Plus |
CG10880-PB | 278 | CG10880-PB | 1..278 | 1..279 | 1451 | 99.6 | Plus |