Clone BS08011 Report

Search the DGRC for BS08011

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG10880-RA
Protein status:BS08011.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08011.3prime Sequence

870 bp (869 high quality bases) assembled on 2006-01-06

> BS08011.3prime
ATGGTCTAGAAAGCTTTTAAGTCTGAACGGAGATCCGCTCCAGTCGGGGA
GCGCTGCGGAACTTGGTCCACCACCAGAACCAGGCGCACGAAAATCCCAC
AGCCAAGGTGGTGTAATACAAAATAGTAGCCAGGCTCCACTTCTTCTTCT
TGTGACTCTCGTTGCCCTGCACTTTCTTCTGGCTCCTTGCGTTCTGGGCA
TTAGCTTCGATTTTCGCGAGATCCTTGGCAATCTCTTCGGTGATCTGATT
CACGCTTTTTAGAGTTTCCTGGGCAAAGCAGCTGGCATATCGTTTGTCGC
CCACCACGACGTCCTCGGGAGTGGAGACCTGCAGCTTGTAGTTGGTGGCC
GCTAAAGAAGCGCGCAGGGACATAAAGTGGTTGCCAGCATTGCCCAGAAT
CTGATTGTTGTAGTTTTCGGCTTCAGGATGGTTGCAAATGTATTCGTAAC
TGGGATTCTGGTTGGGAATCTTTTCGAACATCTCCAGGAGCTGTTGCCGT
TGCTTTCGACACTTGAACCCGAAGAGTTCCAAATCTTCGTCGGTGAGAGA
GGCCAAATCCAGATAGTTAATGTTCTCGGCAATAAGTTTGTCCACACAGG
TGCTGGCGTAGTCCGTTTCCACGCTGGTAGAGCACAGTAGACCGTTGAGG
ATCTCCCTCTCCCGGCGTGTGTCCCTGTGAGCCTTTTGGCGAACCCAAGG
ACGTCGATTGTAGCCCAGGAAAGCACTGTCCAATTCCTTCTGCTCGGTGT
GCGAGTGAAAGTTCTTTGTGGCCTCAAACTGAATGGTCGGCGGAACCTTG
GCCATCGCCACCAAGGGGACATCCCCCGCGGACATTGTGTGCGTCTTCGT
TGCCATGTCGACTGATAACT

BS08011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-PA 840 CG10880-RA 1..840 856..17 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-RA 1285 CG10880-RA 87..928 856..15 4210 100 Minus
CG10880-RB 1282 CG10880-RB 87..925 856..15 4155 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2215515..2216225 146..856 3555 100 Plus
2L 23513712 2L 2215329..2215461 15..147 665 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:10:48 has no hits.

BS08011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:44 Download gff for BS08011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-PA 1..840 17..856 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:02 Download gff for BS08011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-PA 1..840 17..856 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:32 Download gff for BS08011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 82..928 15..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:04 Download gff for BS08011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 82..928 15..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:04 Download gff for BS08011.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2215329..2215459 15..145 100 <- Plus
2L 2215515..2216230 146..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:32 Download gff for BS08011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2215329..2215459 15..145 100 <- Plus
arm_2L 2215515..2216230 146..863 99   Plus

BS08011.5prime Sequence

870 bp (847 high quality bases) assembled on 2006-01-06

> BS08011.5prime
GAAGTTATCAGTCGACATGGCAACGAAGACGCACACAATGTCCGCGGGGG
ATGTCCCCTTGGTGGCGATGGCCAAGGTTCCGCCGACCATTCAGTTTGAG
GCCACAAAGAACTTTCACTCGCACACCGAGCAGAAGGAATTGGACAGTGC
TTTCCTGGGCTACAATCGACGTCCTTGGGTTCGCCAAAAGGCTCACAGGG
ACACACGCCGGGAGAGGGAGATCCTCAACGGTCTACTGTGCTCTACCAGC
GTGGAAACGGACTACGCCAGCACCTGTGTGGACAAACTTATTGCCGAGAA
CATTAACTATCTGGATTTGGCCTCTCTCACCGACGAAGATTTGGAACTCT
TCGGGTTCAAGTGTCGAAAGCAACGGCAACAGCTCCTGGAGATGTTCGAA
AAGATTCCCAACCAGAATCCCAGTTACGAATACATTTGCAACCATCCTGA
AGCCGAAAACTACAACAATCAGATTCTGGGCAATGCTGGCAACCACTTTA
TGTCCCTGCGCGCTTCTTTAGCGGCCACCAACTACAAGCTGCAGGTCTCC
ACTCCCGAGGACGTCGTGGTGGGCGACAAACGATATGCCAGCTGCTTTGC
CCAGGAAACTCTAAAAAGCGTGAATCAGATCACCGAAGAGATTGCCAAGG
ATCTCGCGAAAATCGAAGCTAATGCCCAGAACGCAAGGAGCCAGAAGAAA
GTGCAGGGCAACGAGAGTCACAAGAAGAAGAAGTGGAGCCTGGCTACTAT
TTTGTATTACACCACCTTGGCTGTGGGATTTTCGTGCGCCTGGTTCTGGT
GGTGGACCAAGTTCCGCAGCGCTCCCCGACTGGAGCGGATCTCCGTTCAG
ACTTAAAAGCTTTCTAGACC

BS08011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-PA 840 CG10880-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-RA 1285 CG10880-RA 87..928 17..858 4210 100 Plus
CG10880-RB 1282 CG10880-RB 87..925 17..858 4155 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2215515..2216225 727..17 3555 100 Minus
2L 23513712 2L 2215329..2215461 858..726 665 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:03:05 has no hits.

BS08011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:45 Download gff for BS08011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:04 Download gff for BS08011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:53:26 Download gff for BS08011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 82..928 10..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:51 Download gff for BS08011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 82..928 10..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:51 Download gff for BS08011.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2215329..2215459 728..858 100 <- Minus
2L 2215515..2216230 10..727 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:53:26 Download gff for BS08011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2215329..2215459 728..858 100 <- Minus
arm_2L 2215515..2216230 10..727 99   Minus

BS08011.complete Sequence

872 bp (872 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636058

> BS08011.complete
GAAGTTATCAGTCGACATGGCAACGAAGACGCACACAATGTCCGCGGGGG
ATGTCCCCTTGGTGGCGATGGCCAAGGTTCCGCCGACCATTCAGTTTGAG
GCCACAAAGAACTTTCACTCGCACACCGAGCAGAAGGAATTGGACAGTGC
TTTCCTGGGCTACAATCGACGTCCTTGGGTTCGCCAAAAGGCTCACAGGG
ACACACGCCGGGAGAGGGAGATCCTCAACGGTCTACTGTGCTCTACCAGC
GTGGAAACGGACTACGCCAGCACCTGTGTGGACAAACTTATTGCCGAGAA
CATTAACTATCTGGATTTGGCCTCTCTCACCGACGAAGATTTGGAACTCT
TCGGGTTCAAGTGTCGAAAGCAACGGCAACAGCTCCTGGAGATGTTCGAA
AAGATTCCCAACCAGAATCCCAGTTACGAATACATTTGCAACCATCCTGA
AGCCGAAAACTACAACAATCAGATTCTGGGCAATGCTGGCAACCACTTTA
TGTCCCTGCGCGCTTCTTTAGCGGCCACCAACTACAAGCTGCAGGTCTCC
ACTCCCGAGGACGTCGTGGTGGGCGACAAACGATATGCCAGCTGCTTTGC
CCAGGAAACTCTAAAAAGCGTGAATCAGATCACCGAAGAGATTGCCAAGG
ATCTCGCGAAAATCGAAGCTAATGCCCAGAACGCAAGGAGCCAGAAGAAA
GTGCAGGGCAACGAGAGTCACAAGAAGAAGAAGTGGAGCCTGGCTACTAT
TTTGTATTACACCACCTTGGCTGTGGGATTTTCGTGCGCCTGGTTCTGGT
GGTGGACCAAGTTCCGCAGCGCTCCCCGACTGGAGCGGATCTCCGTTCAG
ACTTAAAAGCTTTCTAGACCAT

BS08011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-RA 840 CG10880-PA 1..840 17..856 4200 100 Plus
CG10880-RB 837 CG10880-PB 1..837 17..856 4120 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-RA 1285 CG10880-RA 87..928 17..858 4210 100 Plus
CG10880-RB 1282 CG10880-RB 87..925 17..858 4130 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2215515..2216225 727..17 3555 100 Minus
2L 23513712 2L 2215329..2215461 858..726 665 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:07:01 has no hits.

BS08011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:51 Download gff for BS08011.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:05 Download gff for BS08011.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 69..915 10..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:06 Download gff for BS08011.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 87..924 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:51 Download gff for BS08011.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 69..915 10..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:19 Download gff for BS08011.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 87..924 17..854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:19 Download gff for BS08011.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2215333..2215459 728..854 100 <- Minus
2L 2215515..2216225 17..727 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:06 Download gff for BS08011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2215333..2215459 728..854 100 <- Minus
arm_2L 2215515..2216225 17..727 100   Minus

BS08011.pep Sequence

Translation from 16 to 855

> BS08011.pep
MATKTHTMSAGDVPLVAMAKVPPTIQFEATKNFHSHTEQKELDSAFLGYN
RRPWVRQKAHRDTRREREILNGLLCSTSVETDYASTCVDKLIAENINYLD
LASLTDEDLELFGFKCRKQRQQLLEMFEKIPNQNPSYEYICNHPEAENYN
NQILGNAGNHFMSLRASLAATNYKLQVSTPEDVVVGDKRYASCFAQETLK
SVNQITEEIAKDLAKIEANAQNARSQKKVQGNESHKKKKWSLATILYYTT
LAVGFSCAWFWWWTKFRSAPRLERISVQT*

BS08011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-PA 279 CG10880-PA 1..279 1..279 1468 100 Plus
CG10880-PB 278 CG10880-PB 1..278 1..279 1451 99.6 Plus