Clone Sequence Records
BS08020.3prime Sequence
930 bp (825 high quality bases) assembled on 2006-01-06
> BS08020.3prime
ATGGTCTAGAAAGCTTTCAGTGCCTGCGCTGCGGATTGGACTGAAGCATC
CGCGCGAACCGCCTCACCAGGAAAGGCCACAGGATGAGGACGGCAAACCA
GAGCGGGGAGATGTTCCTGAAGGGCCACCAGGCGGGCAGTGATCGTGGCT
GCGCCACCGTTCCTTTCGCTGCCTTTTGGCCGCTGCGAAGTTCGTTGAGC
GACTGCTCCAGGCTGCGAACGCGCTGCTGCACTGCGCCCACATCGCTGTT
CATCCGTGTGATAGCAGCCTGGATTTGACGCAGCAGGTCCGTGTTCTGGC
CAATCGCCTGGGTCAGCTCGTGGCTGAGATCGTAGGGATCGTCGTACTCA
TCGTCCGAGGGATCCACGATGGCCACGCTGCTGTTGCTCGTAAAGTTGTG
CGTGTCATGTTGTGTGTAGCTTGCTGTTGGCTTAGGTCCATAGCCATTGG
TCAGTGGCGGCGAACTATGGCCATTCTCCTTAATCGTTTCGGATGTGGCC
AGCGGTGCGGTGCTAGTCGCCTGAGGTTCCGGCTCCGGTTCGCCATTACA
ACTGGAGCCGTGCTGGGGACTGTTGGTGCGCGAGTGGAACGGCGAGTTGG
GATGCGACTCGGCCAGCTCCTTCATGCCGGGCGAGACCAGCTCCAGTTCG
TCCAGGCTGATGTTTCCCAGACTATCGAGGCTGCCCACAAAGTTCTGCAC
ATTCTCCGTGAACGACATGGTCTCAATGATCTCCTGCAGGCTCTCCACAT
AGCGCTGCATCGCCTCCTCCTTGGTCAAGTGACGGTTATCGTTCCATGCC
TGCCACTTGGCCTTGCCTACGATGTCCCAAAAGCCGGGCTTCTTGTCCAC
ATCTGGTCTACCCTCGGTGGCCTGTTTGAACAGCCCGTAGAACTTGAGCA
TCATGCTGGTGCTGGGCTGGTAGGGGCCAT
BS08020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-PA | 975 | CG8814-RA | 62..975 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 1785 | CG8814-RA | 439..1352 | 930..17 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2875449..2876362 | 930..17 | 4570 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:48:41 has no hits.
BS08020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:57 Download gff for
BS08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 62..975 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:20 Download gff for
BS08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 62..975 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:51 Download gff for
BS08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 457..1373 | 13..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:57 Download gff for
BS08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 439..1355 | 13..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:57 Download gff for
BS08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2875449..2876365 | 13..930 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:51 Download gff for
BS08020.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2875449..2876365 | 13..930 | 99 | | Minus |
BS08020.5prime Sequence
936 bp (830 high quality bases) assembled on 2006-01-06
> BS08020.5prime
GAAGTTATCAGTCGACATGGCGGCGATTGAGGAGCGTTTCCAGGCGGCAG
TCAATGTGATAAAGGGTCTGCCCAAAAATGGCCCCTACCAGCCCAGCACC
AGCATGATGCTCAAGTTCTACGGGCTGTTCAAACAGGCCACCGAGGGTAG
ACCAGATGTGGACAAGAAGCCCGGCTTTTGGGACATCGTAGGCAAGGCCA
AGTGGCAGGCATGGAACGATAACCGTCACTTGACCAAGGAGGAGGCGATG
CAGCGCTATGTGGAGAGCCTGCAGGAGATCATTGAGACCATGTCGTTCAC
GGAGAATGTGCAGAACTTTGTGGGCAGCCTCGATAGTCTGGGAAACATCA
GCCTGGACGAACTGGAGCTGGTCTCGCCCGGCATGAAGGAGCTGGCCGAG
TCGCATCCCAACTCGCCGTTCCACTCGCGCACCAACAGTCCCCAGCACGG
CTCCAGTTGTAATGGCGAACCGGAGCCGGAACCTCAGGCGACTAGCACCG
CACCGCTGGCCACATCCGAAACGATTAAGGAGAATGGCCATAGTTCGCCG
CCACTGACCAATGGCTATGGACCTAAGCCAACAGCAAGCTACACACAACA
TGACACGCACAACTTTACGAGCAACAGCAGCGTGGCCATCGTGGATCCCT
CGGACGATGAGTACGACGATCCCTACGATCTCAGCCACGAGCTGACCCAG
GCGATTGGCCAGAACACGGACCTGCTGCGTCAAATCCAGGCTGCTATCAC
ACGGATGAACAGCGATGTGGGCGCAGTGCAGCAGCGCGTTCGCAGCCTGG
AGCAGTCGCTCAACGAACTTCGCAGCGGCCAAAAGGCAGCGAAAGGAACG
GTGGCGCAGCCACGATCACTGCCCGCCTGGTGGCCCTTCAGGAACATCTC
CCCGCTCTGGTTTTGCGTCCTCATCCTGTGGCCTTT
BS08020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-PA | 975 | CG8814-RA | 1..920 | 17..936 | 4550 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 1785 | CG8814-RA | 378..1297 | 17..936 | 4570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2875388..2876307 | 17..936 | 4570 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:24:37 has no hits.
BS08020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:58 Download gff for
BS08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:22 Download gff for
BS08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:02 Download gff for
BS08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1315 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:32 Download gff for
BS08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 378..1297 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:32 Download gff for
BS08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2875383..2876307 | 9..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:02 Download gff for
BS08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2875383..2876307 | 9..936 | 99 | | Plus |
BS08020.complete Sequence
1007 bp (1007 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636060
> BS08020.complete
GAAGTTATCAGTCGACATGGCGGCGATTGAGGAGCGTTTCCAGGCGGCAG
TCAATGTGATAAAGGGTCTGCCCAAAAATGGCCCCTACCAGCCCAGCACC
AGCATGATGCTCAAGTTCTACGGGCTGTTCAAACAGGCCACCGAGGGTAG
ACCAGATGTGGACAAGAAGCCCGGCTTTTGGGACATCGTAGGCAAGGCCA
AGTGGCAGGCATGGAACGATAACCGTCACTTGACCAAGGAGGAGGCGATG
CAGCGCTATGTGGAGAGCCTGCAGGAGATCATTGAGACCATGTCGTTCAC
GGAGAATGTGCAGAACTTTGTGGGCAGCCTCGATAGTCTGGGAAACATCA
GCCTGGACGAACTGGAGCTGGTCTCGCCCGGCATGAAGGAGCTGGCCGAG
TCGCATCCCAACTCGCCGTTCCACTCGCGCACCAACAGTCCCCAGCACGG
CTCCAGTTGTAATGGCGAACCGGAGCCGGAACCTCAGGCGACTAGCACCG
CACCGCTGGCCACATCCGAAACGATTAAGGAGAATGGCCATAGTTCGCCG
CCACTGACCAATGGCTATGGACCTAAGCCAACAGCAAGCTACACACAACA
TGACACGCACAACTTTACGAGCAACAGCAGCGTGGCCATCGTGGATCCCT
CGGACGATGAGTACGACGATCCCTACGATCTCAGCCACGAGCTGACCCAG
GCGATTGGCCAGAACACGGACCTGCTGCGTCAAATCCAGGCTGCTATCAC
ACGGATGAACAGCGATGTGGGCGCAGTGCAGCAGCGCGTTCGCAGCCTGG
AGCAGTCGCTCAACGAACTTCGCAGCGGCCAAAAGGCAGCGAAAGGAACG
GTGGCGCAGCCACGATCACTGCCCGCCTGGTGGCCCTTCAGGAACATCTC
CCCGCTCTGGTTTGCCGTCCTCATCCTGTGGCCTTTCCTGGTGAGGCGGT
TCGCGCGGATGCTTCAGTCCAATCCGCAGCGCAGGCACTGAAAGCTTTCT
AGACCAT
BS08020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 975 | CG8814-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 1785 | CG8814-RA | 378..1352 | 17..991 | 4875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2875388..2876362 | 17..991 | 4875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:23:13 has no hits.
BS08020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:53 Download gff for
BS08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:09 Download gff for
BS08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1373 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:23 Download gff for
BS08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1369 | 17..990 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:54 Download gff for
BS08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1373 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:29 Download gff for
BS08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 378..1351 | 17..990 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:29 Download gff for
BS08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2875388..2876361 | 17..990 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:23 Download gff for
BS08020.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2875388..2876361 | 17..990 | 100 | | Plus |
BS08020.pep Sequence
Translation from 16 to 990
> BS08020.pep
MAAIEERFQAAVNVIKGLPKNGPYQPSTSMMLKFYGLFKQATEGRPDVDK
KPGFWDIVGKAKWQAWNDNRHLTKEEAMQRYVESLQEIIETMSFTENVQN
FVGSLDSLGNISLDELELVSPGMKELAESHPNSPFHSRTNSPQHGSSCNG
EPEPEPQATSTAPLATSETIKENGHSSPPLTNGYGPKPTASYTQHDTHNF
TSNSSVAIVDPSDDEYDDPYDLSHELTQAIGQNTDLLRQIQAAITRMNSD
VGAVQQRVRSLEQSLNELRSGQKAAKGTVAQPRSLPAWWPFRNISPLWFA
VLILWPFLVRRFARMLQSNPQRRH*
BS08020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-PA | 324 | CG8814-PA | 1..324 | 1..324 | 1711 | 100 | Plus |
| Dbi-PA | 86 | CG8627-PA | 2..82 | 4..89 | 161 | 39.5 | Plus |
| Dbi-PB | 86 | CG8627-PB | 2..82 | 4..89 | 161 | 39.5 | Plus |
| CG8498-PB | 90 | CG8498-PB | 1..83 | 1..89 | 151 | 38.2 | Plus |
| CG8498-PA | 90 | CG8498-PA | 1..83 | 1..89 | 151 | 38.2 | Plus |
