Clone BS08021 Report

Search the DGRC for BS08021

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptRpt6-RA
Protein status:BS08021.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08021.3prime Sequence

814 bp (813 high quality bases) assembled on 2006-01-06

> BS08021.3prime
ATGGTCTAGAAAGCTTCTACTTCCACAGCTTCTTGATAGACATGTTCTTC
TCCGAGTCCTTCTGCATCACCTTGGCCACAGCCATCTCGAAGTCCTCCTG
GGTGACATGGACGCGTCGTTCGCGCAGCGCATACATGCCGGCCTCCGTGC
AGACGCCCTTGACTTCCGCACCTGATGCGCCTGGCATTAGCTCGGCGATC
TTGCGCAGATTAATGCCACGCGTGAGGTTCATCTTACGGGAGTGGATCTT
CAAGATGTCCAGACGCGCCTCCTCGTTTGGTGGCGGGAACTCGATCTTGC
GATCAATACGGCCGGGACGCAGCAGAGCGGGATCCAGGATGTCAATGCGA
TTGGTGGCCATGATCACCTTGATGTTCTTGGTGGCCTCAAAGCCGTCCAG
CTGGTTAAGTAGCTCCAGCATAGTACGCTGCACCTCGGAATCGCCGCCGG
AACCTGACTCAATACGCGACGAGCCAATGGAATCGATTTCGTCCATGAAA
ATAATTGATGGTGCATGTTCCCGGGCCATTACAAAGAGTTCTCGAACCAT
GCGCGAACCCTCGCCGATGAATTTCTGGACCAGCTCTGAGCCAGAGACGC
GAATGAAGGTGCACTCGGTGTGATGGGCAACGGCCCTGGCCAGCAAAGTC
TTTCCTGTACCTGGAGGTCCATAAAGGAGCACTCCCTTCGGCTGGGCAAT
ACCCAAGGCATCAAACAGCTCTGGATGCTTTACGGGCAACTCAATCACCT
CCTTGATCTCTTTAATCTGTTTGTCCAGGCCGCCAACCATTTCGTATGTG
GAGTCAGGAACTTT

BS08021.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1489-PA 1218 Pros45-RA 421..1218 814..17 3990 100 Minus
CG2241-PA 1200 CG2241-RA 775..872 442..345 190 87.7 Minus
CG2241-PA 1200 CG2241-RA 460..497 760..723 140 94.7 Minus
CG2241-PA 1200 CG2241-RA 1045..1127 172..90 140 86.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1404 CG1489-RA 547..1344 814..17 3990 100 Minus
Rpt6R-RA 1445 CG2241-RA 589..1374 805..17 1590 80.4 Minus
CG1801-RC 5303 CG1801-RC 1..182 98..279 910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21316806..21317603 814..17 3990 100 Minus
3R 32079331 3R 30582269..30583054 17..805 1555 80.1 Plus
3R 32079331 3R 9755157..9755461 288..592 295 73.1 Plus
3R 32079331 3R 23754014..23754187 436..263 285 77.6 Minus
X 23542271 X 11126108..11126432 607..283 245 71.7 Minus
3L 28110227 3L 11943026..11943150 366..242 190 76.8 Minus
Blast to na_te.dros performed on 2015-02-02 17:43:29 has no hits.

BS08021.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:59 Download gff for BS08021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 421..1218 17..814 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:23 Download gff for BS08021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 421..1218 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:44:03 Download gff for BS08021.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 547..1349 10..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:40 Download gff for BS08021.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 547..1349 10..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:40 Download gff for BS08021.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21316806..21317608 10..814 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:44:03 Download gff for BS08021.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21187833..21188635 10..814 99   Minus

BS08021.5prime Sequence

877 bp (759 high quality bases) assembled on 2006-01-06

> BS08021.5prime
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCCACCAGAAC

BS08021.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1489-PA 1218 Pros45-RA 1..852 17..868 4260 100 Plus
CG2241-PA 1200 CG2241-RA 322..377 353..408 155 91 Plus
CG2241-PA 1200 CG2241-RA 460..497 491..528 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1404 CG1489-RA 127..978 17..868 4260 100 Plus
Rpt6R-RA 1445 CG2241-RA 290..1007 147..867 1385 79.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21316547..21317237 178..868 3455 100 Plus
3R 32079331 3R 30582636..30583322 867..178 1330 79.9 Minus
X 23542271 X 21316258..21316403 34..179 730 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:00:46 has no hits.

BS08021.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:01 Download gff for BS08021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:24 Download gff for BS08021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:31 Download gff for BS08021.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..987 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:40 Download gff for BS08021.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..987 17..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:40 Download gff for BS08021.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21316178..21316195 17..34 100 -> Plus
X 21316259..21316403 35..179 100 -> Plus
X 21316549..21317246 180..877 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:31 Download gff for BS08021.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21187286..21187430 35..179 100 -> Plus
arm_X 21187205..21187222 17..34 100 -> Plus
arm_X 21187576..21188273 180..877 99   Plus

BS08021.complete Sequence

1250 bp (1250 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636061

> BS08021.complete
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCACCAAGAACATCAAGGTGATCATGGCCACCAA
TCGCATTGACATCCTGGATCCCGCTCTGCTGCGTCCCGGCCGTATTGATC
GCAAGATCGAGTTCCCGCCACCAAACGAGGAGGCGCGTCTGGACATCTTG
AAGATCCACTCCCGTAAGATGAACCTCACGCGTGGCATTAATCTGCGCAA
GATCGCCGAGCTAATGCCAGGCGCATCAGGTGCGGAAGTCAAGGGCGTCT
GCACGGAGGCCGGCATGTATGCGCTGCGCGAACGACGCGTCCATGTCACC
CAGGAGGACTTCGAGATGGCTGTGGCCAAGGTGATGCAGAAGGACTCGGA
GAAGAACATGTCTATCAAGAAGCTGTGGAAGTAGAAGCTTTCTAGACCAT

BS08021.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1218 CG1489-PA 1..1218 17..1234 6090 100 Plus
Rpt6R-RA 1200 CG2241-PA 116..1200 147..1234 2150 80.1 Plus
Rpt2-RB 1320 CG5289-PB 655..1060 563..968 305 71.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1404 CG1489-RA 127..1344 17..1234 6090 100 Plus
Rpt6R-RA 1445 CG2241-RA 290..1374 147..1234 2150 80.1 Plus
CG1801-RC 5303 CG1801-RC 1..182 1153..972 910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21316547..21317603 178..1234 5285 100 Plus
3R 32079331 3R 30582269..30583322 1234..178 2130 80.3 Minus
X 23542271 X 21316258..21316403 34..179 730 100 Plus
3R 32079331 3R 9755157..9755461 963..659 295 73.1 Minus
3R 32079331 3R 23754014..23754187 815..988 285 77.6 Plus
X 23542271 X 11126108..11126432 644..968 245 71.7 Plus
3L 28110227 3L 11943026..11943150 885..1009 190 76.8 Plus
Blast to na_te.dros performed on 2014-11-27 17:02:34 has no hits.

BS08021.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:55 Download gff for BS08021.complete
Subject Subject Range Query Range Percent Splice Strand
Pros45-RA 1..1218 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:10 Download gff for BS08021.complete
Subject Subject Range Query Range Percent Splice Strand
Pros45-RA 119..1341 17..1241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:41 Download gff for BS08021.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..1344 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:55 Download gff for BS08021.complete
Subject Subject Range Query Range Percent Splice Strand
Pros45-RA 119..1341 17..1241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:07 Download gff for BS08021.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..1344 17..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:07 Download gff for BS08021.complete
Subject Subject Range Query Range Percent Splice Strand
X 21316178..21316195 17..34 100 -> Plus
X 21316259..21316403 35..179 100 -> Plus
X 21316549..21317603 180..1234 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:41 Download gff for BS08021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21187205..21187222 17..34 100 -> Plus
arm_X 21187286..21187430 35..179 100 -> Plus
arm_X 21187576..21188630 180..1234 100   Plus

BS08021.pep Sequence

Translation from 16 to 1233

> BS08021.pep
MTVTNRMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNE
LNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDK
NIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV
GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR
AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEI
DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL
DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELM
PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI
KKLWK*

BS08021.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-PA 405 CG1489-PA 1..405 1..405 2050 100 Plus
Rpt6R-PA 399 CG2241-PA 12..399 17..405 1787 90.5 Plus
Rpt2-PB 439 CG5289-PB 64..431 24..395 900 47 Plus
Rpt2-PA 439 CG5289-PA 64..431 24..395 900 47 Plus
Rpt1-PA 433 CG1341-PA 38..418 10..391 899 49.5 Plus