Clone Sequence Records
BS08021.3prime Sequence
814 bp (813 high quality bases) assembled on 2006-01-06
> BS08021.3prime
ATGGTCTAGAAAGCTTCTACTTCCACAGCTTCTTGATAGACATGTTCTTC
TCCGAGTCCTTCTGCATCACCTTGGCCACAGCCATCTCGAAGTCCTCCTG
GGTGACATGGACGCGTCGTTCGCGCAGCGCATACATGCCGGCCTCCGTGC
AGACGCCCTTGACTTCCGCACCTGATGCGCCTGGCATTAGCTCGGCGATC
TTGCGCAGATTAATGCCACGCGTGAGGTTCATCTTACGGGAGTGGATCTT
CAAGATGTCCAGACGCGCCTCCTCGTTTGGTGGCGGGAACTCGATCTTGC
GATCAATACGGCCGGGACGCAGCAGAGCGGGATCCAGGATGTCAATGCGA
TTGGTGGCCATGATCACCTTGATGTTCTTGGTGGCCTCAAAGCCGTCCAG
CTGGTTAAGTAGCTCCAGCATAGTACGCTGCACCTCGGAATCGCCGCCGG
AACCTGACTCAATACGCGACGAGCCAATGGAATCGATTTCGTCCATGAAA
ATAATTGATGGTGCATGTTCCCGGGCCATTACAAAGAGTTCTCGAACCAT
GCGCGAACCCTCGCCGATGAATTTCTGGACCAGCTCTGAGCCAGAGACGC
GAATGAAGGTGCACTCGGTGTGATGGGCAACGGCCCTGGCCAGCAAAGTC
TTTCCTGTACCTGGAGGTCCATAAAGGAGCACTCCCTTCGGCTGGGCAAT
ACCCAAGGCATCAAACAGCTCTGGATGCTTTACGGGCAACTCAATCACCT
CCTTGATCTCTTTAATCTGTTTGTCCAGGCCGCCAACCATTTCGTATGTG
GAGTCAGGAACTTT
BS08021.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1489-PA | 1218 | Pros45-RA | 421..1218 | 814..17 | 3990 | 100 | Minus |
CG2241-PA | 1200 | CG2241-RA | 775..872 | 442..345 | 190 | 87.7 | Minus |
CG2241-PA | 1200 | CG2241-RA | 460..497 | 760..723 | 140 | 94.7 | Minus |
CG2241-PA | 1200 | CG2241-RA | 1045..1127 | 172..90 | 140 | 86.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1404 | CG1489-RA | 547..1344 | 814..17 | 3990 | 100 | Minus |
Rpt6R-RA | 1445 | CG2241-RA | 589..1374 | 805..17 | 1590 | 80.4 | Minus |
CG1801-RC | 5303 | CG1801-RC | 1..182 | 98..279 | 910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21316806..21317603 | 814..17 | 3990 | 100 | Minus |
3R | 32079331 | 3R | 30582269..30583054 | 17..805 | 1555 | 80.1 | Plus |
3R | 32079331 | 3R | 9755157..9755461 | 288..592 | 295 | 73.1 | Plus |
3R | 32079331 | 3R | 23754014..23754187 | 436..263 | 285 | 77.6 | Minus |
X | 23542271 | X | 11126108..11126432 | 607..283 | 245 | 71.7 | Minus |
3L | 28110227 | 3L | 11943026..11943150 | 366..242 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:43:29 has no hits.
BS08021.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:30:59 Download gff for
BS08021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 421..1218 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:23 Download gff for
BS08021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 421..1218 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:44:03 Download gff for
BS08021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 547..1349 | 10..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:40 Download gff for
BS08021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 547..1349 | 10..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:40 Download gff for
BS08021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21316806..21317608 | 10..814 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:44:03 Download gff for
BS08021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21187833..21188635 | 10..814 | 99 | | Minus |
BS08021.5prime Sequence
877 bp (759 high quality bases) assembled on 2006-01-06
> BS08021.5prime
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCCACCAGAAC
BS08021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1489-PA | 1218 | Pros45-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG2241-PA | 1200 | CG2241-RA | 322..377 | 353..408 | 155 | 91 | Plus |
CG2241-PA | 1200 | CG2241-RA | 460..497 | 491..528 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1404 | CG1489-RA | 127..978 | 17..868 | 4260 | 100 | Plus |
Rpt6R-RA | 1445 | CG2241-RA | 290..1007 | 147..867 | 1385 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21316547..21317237 | 178..868 | 3455 | 100 | Plus |
3R | 32079331 | 3R | 30582636..30583322 | 867..178 | 1330 | 79.9 | Minus |
X | 23542271 | X | 21316258..21316403 | 34..179 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:00:46 has no hits.
BS08021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:01 Download gff for
BS08021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:24 Download gff for
BS08021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:31 Download gff for
BS08021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..987 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:40 Download gff for
BS08021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..987 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:40 Download gff for
BS08021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21316178..21316195 | 17..34 | 100 | -> | Plus |
X | 21316259..21316403 | 35..179 | 100 | -> | Plus |
X | 21316549..21317246 | 180..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:31 Download gff for
BS08021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21187286..21187430 | 35..179 | 100 | -> | Plus |
arm_X | 21187205..21187222 | 17..34 | 100 | -> | Plus |
arm_X | 21187576..21188273 | 180..877 | 99 | | Plus |
BS08021.complete Sequence
1250 bp (1250 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636061
> BS08021.complete
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCACCAAGAACATCAAGGTGATCATGGCCACCAA
TCGCATTGACATCCTGGATCCCGCTCTGCTGCGTCCCGGCCGTATTGATC
GCAAGATCGAGTTCCCGCCACCAAACGAGGAGGCGCGTCTGGACATCTTG
AAGATCCACTCCCGTAAGATGAACCTCACGCGTGGCATTAATCTGCGCAA
GATCGCCGAGCTAATGCCAGGCGCATCAGGTGCGGAAGTCAAGGGCGTCT
GCACGGAGGCCGGCATGTATGCGCTGCGCGAACGACGCGTCCATGTCACC
CAGGAGGACTTCGAGATGGCTGTGGCCAAGGTGATGCAGAAGGACTCGGA
GAAGAACATGTCTATCAAGAAGCTGTGGAAGTAGAAGCTTTCTAGACCAT
BS08021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1218 | CG1489-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Rpt6R-RA | 1200 | CG2241-PA | 116..1200 | 147..1234 | 2150 | 80.1 | Plus |
Rpt2-RB | 1320 | CG5289-PB | 655..1060 | 563..968 | 305 | 71.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1404 | CG1489-RA | 127..1344 | 17..1234 | 6090 | 100 | Plus |
Rpt6R-RA | 1445 | CG2241-RA | 290..1374 | 147..1234 | 2150 | 80.1 | Plus |
CG1801-RC | 5303 | CG1801-RC | 1..182 | 1153..972 | 910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21316547..21317603 | 178..1234 | 5285 | 100 | Plus |
3R | 32079331 | 3R | 30582269..30583322 | 1234..178 | 2130 | 80.3 | Minus |
X | 23542271 | X | 21316258..21316403 | 34..179 | 730 | 100 | Plus |
3R | 32079331 | 3R | 9755157..9755461 | 963..659 | 295 | 73.1 | Minus |
3R | 32079331 | 3R | 23754014..23754187 | 815..988 | 285 | 77.6 | Plus |
X | 23542271 | X | 11126108..11126432 | 644..968 | 245 | 71.7 | Plus |
3L | 28110227 | 3L | 11943026..11943150 | 885..1009 | 190 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:02:34 has no hits.
BS08021.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:55 Download gff for
BS08021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros45-RA | 1..1218 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:10 Download gff for
BS08021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros45-RA | 119..1341 | 17..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:41 Download gff for
BS08021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..1344 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:55 Download gff for
BS08021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros45-RA | 119..1341 | 17..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:07 Download gff for
BS08021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..1344 | 17..1234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:07 Download gff for
BS08021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21316178..21316195 | 17..34 | 100 | -> | Plus |
X | 21316259..21316403 | 35..179 | 100 | -> | Plus |
X | 21316549..21317603 | 180..1234 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:41 Download gff for
BS08021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21187205..21187222 | 17..34 | 100 | -> | Plus |
arm_X | 21187286..21187430 | 35..179 | 100 | -> | Plus |
arm_X | 21187576..21188630 | 180..1234 | 100 | | Plus |
BS08021.pep Sequence
Translation from 16 to 1233
> BS08021.pep
MTVTNRMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNE
LNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDK
NIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV
GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR
AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEI
DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL
DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELM
PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI
KKLWK*
BS08021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-PA | 405 | CG1489-PA | 1..405 | 1..405 | 2050 | 100 | Plus |
Rpt6R-PA | 399 | CG2241-PA | 12..399 | 17..405 | 1787 | 90.5 | Plus |
Rpt2-PB | 439 | CG5289-PB | 64..431 | 24..395 | 900 | 47 | Plus |
Rpt2-PA | 439 | CG5289-PA | 64..431 | 24..395 | 900 | 47 | Plus |
Rpt1-PA | 433 | CG1341-PA | 38..418 | 10..391 | 899 | 49.5 | Plus |