Clone BS08022 Report

Search the DGRC for BS08022

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptmeso18E-RA
Protein status:BS08022.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08022.3prime Sequence

889 bp (800 high quality bases) assembled on 2006-01-06

> BS08022.3prime
ATGGTCTAGAAAGCTTCTACGTCTGCCTGCCATCCGTCCGTTCATCGCCG
CCAGCCTTTGGTGTCAGCTTGGCCAGCTTGTCCTTCACCTGAACATCGTC
ACCGCTATCGCCGTCGTCTGGCACCTCAATGGCGGCATCCTGATTCGCGA
CGGGAATGGTGCCGCTCCTGCCTGTCGCAATGCCGTTGCGTTCCGGACTG
GTGGGCTGCTCCTGCGTAGCTGGCGGCGCTGCAAACTGAGCCTCTGGTGG
TGGCGGAGACAACGGTCTGGCTGTCGCTGGCGCGTTCTCTTTGGTTGGAT
TAACTGGAAACGTAAGTGCCCGCTTTACGGCCAGCGTTTCAATGGCCACA
ACCGTGCGCTCCAGCAGGTTCATCAGCCGGTCCTCGCGCGCATCCATCCG
CTTGAGGAGCTCCTCGTCCCGCTTCTCGCGCCGCTTCAGATACTCGATCA
GCTCGTAATTGGTGCTGTCGCCGTCGGTCGAGGTGGACATCTTGCGCTTC
TTCTTCAGCGTTGTCGATGAGGAGCAGTCGGACAGGATGTCCGTGTCGAC
GATCACATCGGGGTGCAGTATATTCGCATCCATGCCCGGCGAATAGTAGT
TCTGCGCTCCATTGTAGTTCGTCTGCATCAGCTGGATGTCGTCCGGATTG
AACTCGCCCTCCGAAAGTGGCTCCGACTTCATTGATATGTGGTTCTCGTT
GTGATTGTTGTTCTGGTGGTGCATGTTGAGTGCTCCATTGCAGTCCTTTT
CGAAGTCGGGTGCTTCGCCAGAGTCGTCCATTGGCGCGTGGCCCAAGCCG
AGGCCGTGGCCATGACCCAGGACGTGAAGGTGGTTTTTAATGCTGGCCGC
TGGGGCTCATCCTCGTCGTCGTCTTCGGGCGTCATTTGA

BS08022.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14233-PA 1662 meso18E-RA 839..1662 840..17 4120 100 Minus
CG14233-PA 1662 meso18E-RA 789..839 889..839 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E-RD 2619 CG14233-RD 1291..2166 889..15 4355 99.9 Minus
meso18E-RC 2588 CG14233-RC 1260..2135 889..15 4355 99.9 Minus
meso18E-RB 3096 CG14233-RB 1768..2643 889..15 4355 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19706871..19707465 15..609 2975 100 Plus
X 23542271 X 19708150..19708364 676..889 1025 99.5 Plus
X 23542271 X 19707536..19707604 609..677 345 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:47:25 has no hits.

BS08022.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:02 Download gff for BS08022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14233-PA 790..1662 17..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:25 Download gff for BS08022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14233-PA 790..1662 17..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:03:01 Download gff for BS08022.3prime
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 1769..2643 15..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:53 Download gff for BS08022.3prime
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 1769..2643 15..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:53 Download gff for BS08022.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19706871..19707464 15..608 100 <- Plus
X 19707536..19707604 609..677 100 <- Plus
X 19708152..19708363 678..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:03:01 Download gff for BS08022.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19600904..19601497 15..608 100 <- Plus
arm_X 19601569..19601637 609..677 100 <- Plus
arm_X 19602185..19602396 678..888 99   Plus

BS08022.5prime Sequence

910 bp (820 high quality bases) assembled on 2006-01-06

> BS08022.5prime
GAAGTTATCAGTCGACATGGATACGAAGAATCCCCCGCCGGTGACGAGCA
GCTATCACCACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTG
CCGGAGTCGGTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAG
CGCGTTCCAGTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCG
CCGAGGTGCTCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGC
TGCAATCGGTACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAA
TCCCGAGCGCCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGG
AGATCGAGGAGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTG
GCGCTCATAACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACG
GCAGGCGGCCGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGC
ACCAGCACAGCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCAC
TCGCACGCCCACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCG
CTTCCTGCCCAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCC
CGGTCGGTGGCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTC
GACGAGAATCCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGC
CGCCGTGGCCGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCG
GCGTTCAAATGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCA
GCATTTAAAAACCACCTTCACGTCCTGGGTCATGGCCACGGCCTCGGCTT
GGGGCACGCG

BS08022.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14233-PA 1662 meso18E-RA 1..894 17..910 4445 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E-RD 2619 CG14233-RD 503..1396 17..910 4455 99.9 Plus
meso18E-RC 2588 CG14233-RC 472..1365 17..910 4455 99.9 Plus
meso18E-RB 3096 CG14233-RB 980..1873 17..910 4455 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19708259..19709150 910..19 4445 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 08:02:59 has no hits.

BS08022.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:03 Download gff for BS08022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14233-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:27 Download gff for BS08022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14233-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:53:24 Download gff for BS08022.5prime
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 980..1873 17..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:32 Download gff for BS08022.5prime
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 980..1873 17..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:32 Download gff for BS08022.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19708259..19709160 6..910 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:53:24 Download gff for BS08022.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19602292..19603193 6..910 99   Minus

BS08022.complete Sequence

1694 bp assembled on 2007-10-17

GenBank Submission: FJ636062

> BS08022.complete
GAAGTTATCAGTCGACATGGATACGAAGAATCCCCCGCCGGTGACGAGCA
GCTATCACCACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTG
CCGGAGTCGGTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAG
CGCGTTCCAGTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCG
CCGAGGTGCTCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGC
TGCAATCGGTACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAA
TCCCGAGCGCCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGG
AGATCGAGGAGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTG
GCGCTCATAACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACG
GCAGGCGGCCGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGC
ACCAGCACAGCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCAC
TCGCACGCCCACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCG
CTTCCTGCCCAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCC
CGGTCGGTGGCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTC
GACGAGAATCCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGC
CGCCGTGGCCGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCG
GCGTTCAAATGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCA
GCATTTAAAAACCACCTTCACGTCCTGGGTCATGGCCACGGCCTCGGCTT
GGGCCACGCGCCAATGGACGACTCTGGCGAAGCACCCGACTTCGAAAAGG
ACTGCAATGGAGCACTCAACATGCACCACCAGAACAACAATCACAACGAG
AACCACATATCAATGAAGTCGGAGCCACTTTCGGAGGGCGAGTTCAATCC
GGACGACATCCAGCTGATGCAGACGAACTACAATGGAGCGCAGAACTACT
ATTCGCCGGGCATGGATGCGAATATACTGCACCCCGATGTGATCGTCGAC
ACGGACATCCTGTCCGACTGCTCCTCATCGACAACGCTGAAGAAGAAGCG
CAAGATGTCCACCTCGACCGACGGCGACAGCACCAATTACGAGCTGATCG
AGTATCTGAAGCGGCGCGAGAAGCGGGACGAGGAGCTCCTCAAGCGGATG
GATGCGCGCGAGGACCGGCTGATGAACCTGCTGGAGCGCACGGTTGTGGC
CATTGAAACGCTGGCCGTAAAGCGGGCACTTACGTTTCCAGTTAATCCAA
CCAAAGAGAACGCGCCAGCGACAGCCAGACCGTTGTCTCCGCCACCACCA
GAGGCTCAGTTTGCAGCGCCGCCAGCTACGCAGGAGCAGCCCACCAGTCC
GGAACGCAACGGCATTGCGACAGGCAGGAGCGGCACCATTCCCGTCGCGA
ATCAGGATGCCGCCATTGAGGTGCCAGACGACGGCGATAGCGGTGACGAT
GTTCAGGTGAAGGACAAGCTGGCCAAGCTGACACCAAAGGCTGGCGGCGA
TGAACGGACGGATGGCAGGCAGACGTAGAAGCTTTCTAGACCAT

BS08022.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E-RD 1662 CG14233-PD 1..1662 17..1678 8310 100 Plus
meso18E-RC 1662 CG14233-PC 1..1662 17..1678 8310 100 Plus
meso18E-RB 1662 CG14233-PB 1..1662 17..1678 8310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E-RD 2619 CG14233-RD 503..2166 17..1680 8320 100 Plus
meso18E-RC 2588 CG14233-RC 472..2135 17..1680 8320 100 Plus
meso18E-RB 3096 CG14233-RB 980..2643 17..1680 8320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19708150..19709150 1019..19 5005 100 Minus
X 23542271 X 19706871..19707465 1680..1086 2975 100 Minus
X 23542271 X 19707536..19707604 1086..1018 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:46:11 has no hits.

BS08022.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:45 Download gff for BS08022.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 1..1662 17..1678 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:25 Download gff for BS08022.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 401..2064 17..1680 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:49 Download gff for BS08022.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 980..2641 17..1678 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:56 Download gff for BS08022.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 401..2062 17..1678 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:51 Download gff for BS08022.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 980..2641 17..1678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:51 Download gff for BS08022.complete
Subject Subject Range Query Range Percent Splice Strand
X 19706873..19707464 1087..1678 100 <- Minus
X 19707536..19707604 1018..1086 100 <- Minus
X 19708152..19709151 17..1017 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:49 Download gff for BS08022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19600906..19601497 1087..1678 100 <- Minus
arm_X 19601569..19601637 1018..1086 100 <- Minus
arm_X 19602185..19603184 17..1017 99   Minus

BS08022.pep Sequence

Translation from 16 to 1677

> BS08022.pep
MDTKNPPPVTSSYHHQRAPRTPESYFNVPESVALLNIVKSERIQSAFQSN
RKNHASVWEMVAEVLNRFSARKRTAKQCCNRYENLKKIYTQLKKNPERHV
RRNWPYMFLFKEIEEQRGECWGSNGKRLALITKNHNELSYYQRRRQAAEL
GVLLNKDNLTPHQHSLLQSLSQSQSQSHSHAHSTDSSQSGSKLDRFLPNH
FVEAQLSEVAGPVGGSASGVSGMSAGGFDENPLQMQMVQAAAAAAAVAAH
KRHELQMASVGGVQMTPEDDDEDEPQRPAFKNHLHVLGHGHGLGLGHAPM
DDSGEAPDFEKDCNGALNMHHQNNNHNENHISMKSEPLSEGEFNPDDIQL
MQTNYNGAQNYYSPGMDANILHPDVIVDTDILSDCSSSTTLKKKRKMSTS
TDGDSTNYELIEYLKRREKRDEELLKRMDAREDRLMNLLERTVVAIETLA
VKRALTFPVNPTKENAPATARPLSPPPPEAQFAAPPATQEQPTSPERNGI
ATGRSGTIPVANQDAAIEVPDDGDSGDDVQVKDKLAKLTPKAGGDERTDG
RQT*

BS08022.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E-PD 553 CG14233-PD 1..553 1..553 2905 100 Plus
meso18E-PC 553 CG14233-PC 1..553 1..553 2905 100 Plus
meso18E-PB 553 CG14233-PB 1..553 1..553 2905 100 Plus
meso18E-PA 553 CG14233-PA 1..553 1..553 2905 100 Plus