Clone Sequence Records
BS08022.3prime Sequence
889 bp (800 high quality bases) assembled on 2006-01-06
> BS08022.3prime
ATGGTCTAGAAAGCTTCTACGTCTGCCTGCCATCCGTCCGTTCATCGCCG
CCAGCCTTTGGTGTCAGCTTGGCCAGCTTGTCCTTCACCTGAACATCGTC
ACCGCTATCGCCGTCGTCTGGCACCTCAATGGCGGCATCCTGATTCGCGA
CGGGAATGGTGCCGCTCCTGCCTGTCGCAATGCCGTTGCGTTCCGGACTG
GTGGGCTGCTCCTGCGTAGCTGGCGGCGCTGCAAACTGAGCCTCTGGTGG
TGGCGGAGACAACGGTCTGGCTGTCGCTGGCGCGTTCTCTTTGGTTGGAT
TAACTGGAAACGTAAGTGCCCGCTTTACGGCCAGCGTTTCAATGGCCACA
ACCGTGCGCTCCAGCAGGTTCATCAGCCGGTCCTCGCGCGCATCCATCCG
CTTGAGGAGCTCCTCGTCCCGCTTCTCGCGCCGCTTCAGATACTCGATCA
GCTCGTAATTGGTGCTGTCGCCGTCGGTCGAGGTGGACATCTTGCGCTTC
TTCTTCAGCGTTGTCGATGAGGAGCAGTCGGACAGGATGTCCGTGTCGAC
GATCACATCGGGGTGCAGTATATTCGCATCCATGCCCGGCGAATAGTAGT
TCTGCGCTCCATTGTAGTTCGTCTGCATCAGCTGGATGTCGTCCGGATTG
AACTCGCCCTCCGAAAGTGGCTCCGACTTCATTGATATGTGGTTCTCGTT
GTGATTGTTGTTCTGGTGGTGCATGTTGAGTGCTCCATTGCAGTCCTTTT
CGAAGTCGGGTGCTTCGCCAGAGTCGTCCATTGGCGCGTGGCCCAAGCCG
AGGCCGTGGCCATGACCCAGGACGTGAAGGTGGTTTTTAATGCTGGCCGC
TGGGGCTCATCCTCGTCGTCGTCTTCGGGCGTCATTTGA
BS08022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14233-PA | 1662 | meso18E-RA | 839..1662 | 840..17 | 4120 | 100 | Minus |
CG14233-PA | 1662 | meso18E-RA | 789..839 | 889..839 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
meso18E-RD | 2619 | CG14233-RD | 1291..2166 | 889..15 | 4355 | 99.9 | Minus |
meso18E-RC | 2588 | CG14233-RC | 1260..2135 | 889..15 | 4355 | 99.9 | Minus |
meso18E-RB | 3096 | CG14233-RB | 1768..2643 | 889..15 | 4355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19706871..19707465 | 15..609 | 2975 | 100 | Plus |
X | 23542271 | X | 19708150..19708364 | 676..889 | 1025 | 99.5 | Plus |
X | 23542271 | X | 19707536..19707604 | 609..677 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:47:25 has no hits.
BS08022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:02 Download gff for
BS08022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14233-PA | 790..1662 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:25 Download gff for
BS08022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14233-PA | 790..1662 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:03:01 Download gff for
BS08022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RB | 1769..2643 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:53 Download gff for
BS08022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RB | 1769..2643 | 15..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:53 Download gff for
BS08022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19706871..19707464 | 15..608 | 100 | <- | Plus |
X | 19707536..19707604 | 609..677 | 100 | <- | Plus |
X | 19708152..19708363 | 678..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:03:01 Download gff for
BS08022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19600904..19601497 | 15..608 | 100 | <- | Plus |
arm_X | 19601569..19601637 | 609..677 | 100 | <- | Plus |
arm_X | 19602185..19602396 | 678..888 | 99 | | Plus |
BS08022.5prime Sequence
910 bp (820 high quality bases) assembled on 2006-01-06
> BS08022.5prime
GAAGTTATCAGTCGACATGGATACGAAGAATCCCCCGCCGGTGACGAGCA
GCTATCACCACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTG
CCGGAGTCGGTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAG
CGCGTTCCAGTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCG
CCGAGGTGCTCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGC
TGCAATCGGTACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAA
TCCCGAGCGCCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGG
AGATCGAGGAGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTG
GCGCTCATAACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACG
GCAGGCGGCCGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGC
ACCAGCACAGCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCAC
TCGCACGCCCACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCG
CTTCCTGCCCAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCC
CGGTCGGTGGCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTC
GACGAGAATCCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGC
CGCCGTGGCCGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCG
GCGTTCAAATGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCA
GCATTTAAAAACCACCTTCACGTCCTGGGTCATGGCCACGGCCTCGGCTT
GGGGCACGCG
BS08022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14233-PA | 1662 | meso18E-RA | 1..894 | 17..910 | 4445 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
meso18E-RD | 2619 | CG14233-RD | 503..1396 | 17..910 | 4455 | 99.9 | Plus |
meso18E-RC | 2588 | CG14233-RC | 472..1365 | 17..910 | 4455 | 99.9 | Plus |
meso18E-RB | 3096 | CG14233-RB | 980..1873 | 17..910 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19708259..19709150 | 910..19 | 4445 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:02:59 has no hits.
BS08022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:03 Download gff for
BS08022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14233-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:27 Download gff for
BS08022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14233-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:53:24 Download gff for
BS08022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RB | 980..1873 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:32 Download gff for
BS08022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RB | 980..1873 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:32 Download gff for
BS08022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19708259..19709160 | 6..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:53:24 Download gff for
BS08022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19602292..19603193 | 6..910 | 99 | | Minus |
BS08022.complete Sequence
1694 bp assembled on 2007-10-17
GenBank Submission: FJ636062
> BS08022.complete
GAAGTTATCAGTCGACATGGATACGAAGAATCCCCCGCCGGTGACGAGCA
GCTATCACCACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTG
CCGGAGTCGGTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAG
CGCGTTCCAGTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCG
CCGAGGTGCTCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGC
TGCAATCGGTACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAA
TCCCGAGCGCCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGG
AGATCGAGGAGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTG
GCGCTCATAACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACG
GCAGGCGGCCGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGC
ACCAGCACAGCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCAC
TCGCACGCCCACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCG
CTTCCTGCCCAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCC
CGGTCGGTGGCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTC
GACGAGAATCCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGC
CGCCGTGGCCGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCG
GCGTTCAAATGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCA
GCATTTAAAAACCACCTTCACGTCCTGGGTCATGGCCACGGCCTCGGCTT
GGGCCACGCGCCAATGGACGACTCTGGCGAAGCACCCGACTTCGAAAAGG
ACTGCAATGGAGCACTCAACATGCACCACCAGAACAACAATCACAACGAG
AACCACATATCAATGAAGTCGGAGCCACTTTCGGAGGGCGAGTTCAATCC
GGACGACATCCAGCTGATGCAGACGAACTACAATGGAGCGCAGAACTACT
ATTCGCCGGGCATGGATGCGAATATACTGCACCCCGATGTGATCGTCGAC
ACGGACATCCTGTCCGACTGCTCCTCATCGACAACGCTGAAGAAGAAGCG
CAAGATGTCCACCTCGACCGACGGCGACAGCACCAATTACGAGCTGATCG
AGTATCTGAAGCGGCGCGAGAAGCGGGACGAGGAGCTCCTCAAGCGGATG
GATGCGCGCGAGGACCGGCTGATGAACCTGCTGGAGCGCACGGTTGTGGC
CATTGAAACGCTGGCCGTAAAGCGGGCACTTACGTTTCCAGTTAATCCAA
CCAAAGAGAACGCGCCAGCGACAGCCAGACCGTTGTCTCCGCCACCACCA
GAGGCTCAGTTTGCAGCGCCGCCAGCTACGCAGGAGCAGCCCACCAGTCC
GGAACGCAACGGCATTGCGACAGGCAGGAGCGGCACCATTCCCGTCGCGA
ATCAGGATGCCGCCATTGAGGTGCCAGACGACGGCGATAGCGGTGACGAT
GTTCAGGTGAAGGACAAGCTGGCCAAGCTGACACCAAAGGCTGGCGGCGA
TGAACGGACGGATGGCAGGCAGACGTAGAAGCTTTCTAGACCAT
BS08022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
meso18E-RD | 1662 | CG14233-PD | 1..1662 | 17..1678 | 8310 | 100 | Plus |
meso18E-RC | 1662 | CG14233-PC | 1..1662 | 17..1678 | 8310 | 100 | Plus |
meso18E-RB | 1662 | CG14233-PB | 1..1662 | 17..1678 | 8310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
meso18E-RD | 2619 | CG14233-RD | 503..2166 | 17..1680 | 8320 | 100 | Plus |
meso18E-RC | 2588 | CG14233-RC | 472..2135 | 17..1680 | 8320 | 100 | Plus |
meso18E-RB | 3096 | CG14233-RB | 980..2643 | 17..1680 | 8320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19708150..19709150 | 1019..19 | 5005 | 100 | Minus |
X | 23542271 | X | 19706871..19707465 | 1680..1086 | 2975 | 100 | Minus |
X | 23542271 | X | 19707536..19707604 | 1086..1018 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:11 has no hits.
BS08022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:45 Download gff for
BS08022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RA | 1..1662 | 17..1678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:25 Download gff for
BS08022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RA | 401..2064 | 17..1680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:49 Download gff for
BS08022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RB | 980..2641 | 17..1678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:56 Download gff for
BS08022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RA | 401..2062 | 17..1678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:51 Download gff for
BS08022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
meso18E-RB | 980..2641 | 17..1678 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:51 Download gff for
BS08022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19706873..19707464 | 1087..1678 | 100 | <- | Minus |
X | 19707536..19707604 | 1018..1086 | 100 | <- | Minus |
X | 19708152..19709151 | 17..1017 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:49 Download gff for
BS08022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19600906..19601497 | 1087..1678 | 100 | <- | Minus |
arm_X | 19601569..19601637 | 1018..1086 | 100 | <- | Minus |
arm_X | 19602185..19603184 | 17..1017 | 99 | | Minus |
BS08022.pep Sequence
Translation from 16 to 1677
> BS08022.pep
MDTKNPPPVTSSYHHQRAPRTPESYFNVPESVALLNIVKSERIQSAFQSN
RKNHASVWEMVAEVLNRFSARKRTAKQCCNRYENLKKIYTQLKKNPERHV
RRNWPYMFLFKEIEEQRGECWGSNGKRLALITKNHNELSYYQRRRQAAEL
GVLLNKDNLTPHQHSLLQSLSQSQSQSHSHAHSTDSSQSGSKLDRFLPNH
FVEAQLSEVAGPVGGSASGVSGMSAGGFDENPLQMQMVQAAAAAAAVAAH
KRHELQMASVGGVQMTPEDDDEDEPQRPAFKNHLHVLGHGHGLGLGHAPM
DDSGEAPDFEKDCNGALNMHHQNNNHNENHISMKSEPLSEGEFNPDDIQL
MQTNYNGAQNYYSPGMDANILHPDVIVDTDILSDCSSSTTLKKKRKMSTS
TDGDSTNYELIEYLKRREKRDEELLKRMDAREDRLMNLLERTVVAIETLA
VKRALTFPVNPTKENAPATARPLSPPPPEAQFAAPPATQEQPTSPERNGI
ATGRSGTIPVANQDAAIEVPDDGDSGDDVQVKDKLAKLTPKAGGDERTDG
RQT*
BS08022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
meso18E-PD | 553 | CG14233-PD | 1..553 | 1..553 | 2905 | 100 | Plus |
meso18E-PC | 553 | CG14233-PC | 1..553 | 1..553 | 2905 | 100 | Plus |
meso18E-PB | 553 | CG14233-PB | 1..553 | 1..553 | 2905 | 100 | Plus |
meso18E-PA | 553 | CG14233-PA | 1..553 | 1..553 | 2905 | 100 | Plus |