Clone BS08023 Report

Search the DGRC for BS08023

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptmts-RA
Protein status:BS08023.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08023.3prime Sequence

914 bp (827 high quality bases) assembled on 2006-01-06

> BS08023.3prime
ATGGTCTAGAAAGCTTTTAAAGGAAATAATCGGGTGTTCTTCGCGTAACA
TGAGGCTCCCCGCGCCTGGGTGCTGGATCAAATTGTAGGAATGAAAATTT
AAGTGAATCATCCAGTTCCATAAGAGCCGCTTGGTTGCCACAGCGGTAGC
AATAGTTTGGCGCTGAGAATATTGTGACCACATTGCGATCGTGACACCAG
TTGTAGCCCTCCATCACCAGCTGATGGGCGCGCGACACCAGTGTCAGGCC
GTTTGTGTTGTTAAAGGTTTCCGAAATATCCTGGCCAAAGGTGTAACCGG
CGCCACGAGGCGAGATTCCCCAGCCACCCCTGTCATCGGGATCGGACCAG
AGCAGATCGCACATGGGACCCTCGTGCGGAACCTCCTGCAAGCGATCGAG
GGCCCGAATGTGATCCAGACTGTCGATCGAGGGACTGAGGCCTCCGTGCA
GGCAGAAGATCTGCCCGTCGACGAGTGCCGTCAGTGGCAAGTAGTCGAAC
AGATCCGTGAAGTACTTCCAAACGTTGGCATTGCCATACTTGCGCAGGCA
CTCGTCGTAGAAGCCGTACACCTGTGTGATCTGGCGCGACTCGTGGTTAC
CGCGCAGGATGGTGATGCGCTCGCGATAGCGAACCTTCAGGGCCACCAGA
AGGGTCACGGTCTCCACGGAGTAGTATCCACGGTCCACGTAGTCGCCCAT
GAACAGGTAGTTGGTGTCCGGAGACTTGCCGCCTATCCGGAAGAGCTCCA
TGAGGTCGTGAAACTGACCGTGGACATCTCCGCACACTGTCACCGGGCAT
TTTACCTCCTGCACATTGGACTCCTTGGAGAGAATCTCCTTGGCCTTGTC
GCAGAGGGTGCGAACTTGTGTCTCTGTCAACTGATTGCATTCGTTCAACT
GCTCAATCCATTGA

BS08023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7109-PA 930 mts-RA 33..930 914..17 4490 100 Minus
CG32505-PA 924 Pp4-19C-RA 340..401 598..537 185 91.9 Minus
CG32505-PE 924 Pp4-19C-RE 340..401 598..537 185 91.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 1507 CG7109-RC 292..1189 914..17 4490 100 Minus
mts-RB 3102 CG7109-RB 435..1332 914..17 4490 100 Minus
mts-RA 2051 CG7109-RA 292..1189 914..17 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7830460..7831026 846..280 2835 100 Minus
2L 23513712 2L 7831467..7831659 282..90 965 100 Minus
X 23542271 X 20422199..20422708 284..793 510 73.3 Plus
2L 23513712 2L 7831734..7831806 89..17 365 100 Minus
X 23542271 X 6372311..6372515 511..715 365 78.5 Plus
2L 23513712 2L 7828084..7828154 914..844 355 100 Minus
X 23542271 X 16558837..16558960 673..796 200 77.4 Plus
X 23542271 X 16567436..16567559 673..796 185 76.6 Plus
Blast to na_te.dros performed on 2015-02-11 21:41:15 has no hits.

BS08023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:05 Download gff for BS08023.3prime
Subject Subject Range Query Range Percent Splice Strand
mts-PA 34..930 17..913 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:29 Download gff for BS08023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7109-PA 34..930 17..913 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:17 Download gff for BS08023.3prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 293..1192 12..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:36:47 Download gff for BS08023.3prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 293..1192 12..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:36:47 Download gff for BS08023.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7831469..7831659 90..280 100 -> Minus
2L 7831734..7831809 12..89 97   Minus
2L 7828085..7828153 845..913 100 -> Minus
2L 7830462..7831025 281..844 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:17 Download gff for BS08023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7828085..7828153 845..913 100 -> Minus
arm_2L 7830462..7831025 281..844 100 -> Minus
arm_2L 7831469..7831659 90..280 100 -> Minus
arm_2L 7831734..7831809 12..89 97   Minus

BS08023.5prime Sequence

921 bp (825 high quality bases) assembled on 2006-01-06

> BS08023.5prime
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGGAGCCTCATGTTACGCG

BS08023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7109-PA 930 mts-RA 1..905 17..921 4525 100 Plus
CG32505-PA 924 Pp4-19C-RA 340..401 365..426 185 91.9 Plus
CG32505-PE 924 Pp4-19C-RE 340..401 365..426 185 91.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 1507 CG7109-RC 260..1164 17..921 4525 100 Plus
mts-RB 3102 CG7109-RB 403..1307 17..921 4525 100 Plus
mts-RA 2051 CG7109-RA 260..1164 17..921 4525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7830460..7831026 117..683 2835 100 Plus
2L 23513712 2L 7831467..7831659 681..873 965 100 Plus
2L 23513712 2L 7828052..7828154 17..119 515 100 Plus
X 23542271 X 20422199..20422708 679..170 510 73.3 Minus
X 23542271 X 6372311..6372515 452..248 365 78.5 Minus
2L 23513712 2L 7831734..7831781 874..921 240 100 Plus
X 23542271 X 16558837..16558960 290..167 200 77.4 Minus
X 23542271 X 16567436..16567559 290..167 185 76.6 Minus
Blast to na_te.dros performed on 2015-02-10 23:05:54 has no hits.

BS08023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:06 Download gff for BS08023.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-PA 1..905 17..921 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:30 Download gff for BS08023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7109-PA 1..905 17..921 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:32 Download gff for BS08023.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 258..1164 13..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:39 Download gff for BS08023.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 258..1164 13..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:39 Download gff for BS08023.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7828050..7828153 13..118 98 -> Plus
2L 7830462..7831025 119..682 100 -> Plus
2L 7831469..7831659 683..873 100 -> Plus
2L 7831734..7831781 874..921 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:32 Download gff for BS08023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7828050..7828153 13..118 98 -> Plus
arm_2L 7830462..7831025 119..682 100 -> Plus
arm_2L 7831469..7831659 683..873 100 -> Plus
arm_2L 7831734..7831781 874..921 100   Plus

BS08023.complete Sequence

962 bp (962 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636063

> BS08023.complete
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGGAGCCTCATGTTACGCGAAGAACACCCGATTATTTCCTTTAAAAGC
TTTCTAGACCAT

BS08023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 930 CG7109-PC 1..930 17..946 4650 100 Plus
mts-RB 930 CG7109-PB 1..930 17..946 4650 100 Plus
mts-RA 930 CG7109-PA 1..930 17..946 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 1507 CG7109-RC 260..1189 17..946 4650 100 Plus
mts-RB 3102 CG7109-RB 403..1332 17..946 4650 100 Plus
mts-RA 2051 CG7109-RA 260..1189 17..946 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7830460..7831026 117..683 2835 100 Plus
2L 23513712 2L 7831467..7831659 681..873 965 100 Plus
2L 23513712 2L 7828052..7828154 17..119 515 100 Plus
X 23542271 X 20422199..20422708 679..170 510 73.3 Minus
2L 23513712 2L 7831734..7831806 874..946 365 100 Plus
X 23542271 X 6372311..6372515 452..248 365 78.5 Minus
X 23542271 X 16558837..16558960 290..167 200 77.4 Minus
X 23542271 X 16567436..16567559 290..167 185 76.6 Minus
Blast to na_te.dros performed on 2014-11-28 01:11:29 has no hits.

BS08023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:41 Download gff for BS08023.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 1..930 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:53 Download gff for BS08023.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 308..1242 13..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:43 Download gff for BS08023.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 260..1187 17..944 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:41 Download gff for BS08023.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 308..1242 13..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:01 Download gff for BS08023.complete
Subject Subject Range Query Range Percent Splice Strand
mts-RA 260..1187 17..944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:01 Download gff for BS08023.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7828052..7828153 17..118 100 -> Plus
2L 7830462..7831025 119..682 100 -> Plus
2L 7831469..7831659 683..873 100 -> Plus
2L 7831734..7831804 874..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:43 Download gff for BS08023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7828052..7828153 17..118 100 -> Plus
arm_2L 7830462..7831025 119..682 100 -> Plus
arm_2L 7831469..7831659 683..873 100 -> Plus
arm_2L 7831734..7831804 874..944 100   Plus

BS08023.pep Sequence

Translation from 16 to 945

> BS08023.pep
MEDKATTKDLDQWIEQLNECNQLTETQVRTLCDKAKEILSKESNVQEVKC
PVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLL
VALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLF
DYLPLTALVDGQIFCLHGGLSPSIDSLDHIRALDRLQEVPHEGPMCDLLW
SDPDDRGGWGISPRGAGYTFGQDISETFNNTNGLTLVSRAHQLVMEGYNW
CHDRNVVTIFSAPNYCYRCGNQAALMELDDSLKFSFLQFDPAPRRGEPHV
TRRTPDYFL*

BS08023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
mts-PC 309 CG7109-PC 1..309 1..309 1684 100 Plus
mts-PB 309 CG7109-PB 1..309 1..309 1684 100 Plus
mts-PA 309 CG7109-PA 1..309 1..309 1684 100 Plus
Pp4-19C-PH 307 CG32505-PH 6..307 9..309 1091 64.4 Plus
Pp4-19C-PG 307 CG32505-PG 6..307 9..309 1091 64.4 Plus