Clone Sequence Records
BS08023.3prime Sequence
914 bp (827 high quality bases) assembled on 2006-01-06
> BS08023.3prime
ATGGTCTAGAAAGCTTTTAAAGGAAATAATCGGGTGTTCTTCGCGTAACA
TGAGGCTCCCCGCGCCTGGGTGCTGGATCAAATTGTAGGAATGAAAATTT
AAGTGAATCATCCAGTTCCATAAGAGCCGCTTGGTTGCCACAGCGGTAGC
AATAGTTTGGCGCTGAGAATATTGTGACCACATTGCGATCGTGACACCAG
TTGTAGCCCTCCATCACCAGCTGATGGGCGCGCGACACCAGTGTCAGGCC
GTTTGTGTTGTTAAAGGTTTCCGAAATATCCTGGCCAAAGGTGTAACCGG
CGCCACGAGGCGAGATTCCCCAGCCACCCCTGTCATCGGGATCGGACCAG
AGCAGATCGCACATGGGACCCTCGTGCGGAACCTCCTGCAAGCGATCGAG
GGCCCGAATGTGATCCAGACTGTCGATCGAGGGACTGAGGCCTCCGTGCA
GGCAGAAGATCTGCCCGTCGACGAGTGCCGTCAGTGGCAAGTAGTCGAAC
AGATCCGTGAAGTACTTCCAAACGTTGGCATTGCCATACTTGCGCAGGCA
CTCGTCGTAGAAGCCGTACACCTGTGTGATCTGGCGCGACTCGTGGTTAC
CGCGCAGGATGGTGATGCGCTCGCGATAGCGAACCTTCAGGGCCACCAGA
AGGGTCACGGTCTCCACGGAGTAGTATCCACGGTCCACGTAGTCGCCCAT
GAACAGGTAGTTGGTGTCCGGAGACTTGCCGCCTATCCGGAAGAGCTCCA
TGAGGTCGTGAAACTGACCGTGGACATCTCCGCACACTGTCACCGGGCAT
TTTACCTCCTGCACATTGGACTCCTTGGAGAGAATCTCCTTGGCCTTGTC
GCAGAGGGTGCGAACTTGTGTCTCTGTCAACTGATTGCATTCGTTCAACT
GCTCAATCCATTGA
BS08023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7109-PA | 930 | mts-RA | 33..930 | 914..17 | 4490 | 100 | Minus |
CG32505-PA | 924 | Pp4-19C-RA | 340..401 | 598..537 | 185 | 91.9 | Minus |
CG32505-PE | 924 | Pp4-19C-RE | 340..401 | 598..537 | 185 | 91.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 1507 | CG7109-RC | 292..1189 | 914..17 | 4490 | 100 | Minus |
mts-RB | 3102 | CG7109-RB | 435..1332 | 914..17 | 4490 | 100 | Minus |
mts-RA | 2051 | CG7109-RA | 292..1189 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7830460..7831026 | 846..280 | 2835 | 100 | Minus |
2L | 23513712 | 2L | 7831467..7831659 | 282..90 | 965 | 100 | Minus |
X | 23542271 | X | 20422199..20422708 | 284..793 | 510 | 73.3 | Plus |
2L | 23513712 | 2L | 7831734..7831806 | 89..17 | 365 | 100 | Minus |
X | 23542271 | X | 6372311..6372515 | 511..715 | 365 | 78.5 | Plus |
2L | 23513712 | 2L | 7828084..7828154 | 914..844 | 355 | 100 | Minus |
X | 23542271 | X | 16558837..16558960 | 673..796 | 200 | 77.4 | Plus |
X | 23542271 | X | 16567436..16567559 | 673..796 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:41:15 has no hits.
BS08023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:05 Download gff for
BS08023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-PA | 34..930 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:29 Download gff for
BS08023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7109-PA | 34..930 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:17 Download gff for
BS08023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 293..1192 | 12..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:36:47 Download gff for
BS08023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 293..1192 | 12..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:36:47 Download gff for
BS08023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7831469..7831659 | 90..280 | 100 | -> | Minus |
2L | 7831734..7831809 | 12..89 | 97 | | Minus |
2L | 7828085..7828153 | 845..913 | 100 | -> | Minus |
2L | 7830462..7831025 | 281..844 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:17 Download gff for
BS08023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7828085..7828153 | 845..913 | 100 | -> | Minus |
arm_2L | 7830462..7831025 | 281..844 | 100 | -> | Minus |
arm_2L | 7831469..7831659 | 90..280 | 100 | -> | Minus |
arm_2L | 7831734..7831809 | 12..89 | 97 | | Minus |
BS08023.5prime Sequence
921 bp (825 high quality bases) assembled on 2006-01-06
> BS08023.5prime
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGGAGCCTCATGTTACGCG
BS08023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7109-PA | 930 | mts-RA | 1..905 | 17..921 | 4525 | 100 | Plus |
CG32505-PA | 924 | Pp4-19C-RA | 340..401 | 365..426 | 185 | 91.9 | Plus |
CG32505-PE | 924 | Pp4-19C-RE | 340..401 | 365..426 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 1507 | CG7109-RC | 260..1164 | 17..921 | 4525 | 100 | Plus |
mts-RB | 3102 | CG7109-RB | 403..1307 | 17..921 | 4525 | 100 | Plus |
mts-RA | 2051 | CG7109-RA | 260..1164 | 17..921 | 4525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7830460..7831026 | 117..683 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 7831467..7831659 | 681..873 | 965 | 100 | Plus |
2L | 23513712 | 2L | 7828052..7828154 | 17..119 | 515 | 100 | Plus |
X | 23542271 | X | 20422199..20422708 | 679..170 | 510 | 73.3 | Minus |
X | 23542271 | X | 6372311..6372515 | 452..248 | 365 | 78.5 | Minus |
2L | 23513712 | 2L | 7831734..7831781 | 874..921 | 240 | 100 | Plus |
X | 23542271 | X | 16558837..16558960 | 290..167 | 200 | 77.4 | Minus |
X | 23542271 | X | 16567436..16567559 | 290..167 | 185 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:05:54 has no hits.
BS08023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:06 Download gff for
BS08023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-PA | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:30 Download gff for
BS08023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7109-PA | 1..905 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:32 Download gff for
BS08023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 258..1164 | 13..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:39 Download gff for
BS08023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 258..1164 | 13..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:39 Download gff for
BS08023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7828050..7828153 | 13..118 | 98 | -> | Plus |
2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
2L | 7831734..7831781 | 874..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:32 Download gff for
BS08023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7828050..7828153 | 13..118 | 98 | -> | Plus |
arm_2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
arm_2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
arm_2L | 7831734..7831781 | 874..921 | 100 | | Plus |
BS08023.complete Sequence
962 bp (962 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636063
> BS08023.complete
GAAGTTATCAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATC
AATGGATTGAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTT
CGCACCCTCTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGT
GCAGGAGGTAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGT
TTCACGACCTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACC
AACTACCTGTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGA
GACCGTGACCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCA
CCATCCTGCGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGC
TTCTACGACGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTA
CTTCACGGATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGC
AGATCTTCTGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGAT
CACATTCGGGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCAT
GTGCGATCTGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCT
CGCCTCGTGGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTT
AACAACACAAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGAT
GGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAG
CGCCAAACTATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTG
GATGATTCACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCG
CGGGGAGCCTCATGTTACGCGAAGAACACCCGATTATTTCCTTTAAAAGC
TTTCTAGACCAT
BS08023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 930 | CG7109-PC | 1..930 | 17..946 | 4650 | 100 | Plus |
mts-RB | 930 | CG7109-PB | 1..930 | 17..946 | 4650 | 100 | Plus |
mts-RA | 930 | CG7109-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-RC | 1507 | CG7109-RC | 260..1189 | 17..946 | 4650 | 100 | Plus |
mts-RB | 3102 | CG7109-RB | 403..1332 | 17..946 | 4650 | 100 | Plus |
mts-RA | 2051 | CG7109-RA | 260..1189 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7830460..7831026 | 117..683 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 7831467..7831659 | 681..873 | 965 | 100 | Plus |
2L | 23513712 | 2L | 7828052..7828154 | 17..119 | 515 | 100 | Plus |
X | 23542271 | X | 20422199..20422708 | 679..170 | 510 | 73.3 | Minus |
2L | 23513712 | 2L | 7831734..7831806 | 874..946 | 365 | 100 | Plus |
X | 23542271 | X | 6372311..6372515 | 452..248 | 365 | 78.5 | Minus |
X | 23542271 | X | 16558837..16558960 | 290..167 | 200 | 77.4 | Minus |
X | 23542271 | X | 16567436..16567559 | 290..167 | 185 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:11:29 has no hits.
BS08023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:41 Download gff for
BS08023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:53 Download gff for
BS08023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 308..1242 | 13..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:43 Download gff for
BS08023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 260..1187 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:41 Download gff for
BS08023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 308..1242 | 13..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:01 Download gff for
BS08023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mts-RA | 260..1187 | 17..944 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:01 Download gff for
BS08023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7828052..7828153 | 17..118 | 100 | -> | Plus |
2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
2L | 7831734..7831804 | 874..944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:43 Download gff for
BS08023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7828052..7828153 | 17..118 | 100 | -> | Plus |
arm_2L | 7830462..7831025 | 119..682 | 100 | -> | Plus |
arm_2L | 7831469..7831659 | 683..873 | 100 | -> | Plus |
arm_2L | 7831734..7831804 | 874..944 | 100 | | Plus |
BS08023.pep Sequence
Translation from 16 to 945
> BS08023.pep
MEDKATTKDLDQWIEQLNECNQLTETQVRTLCDKAKEILSKESNVQEVKC
PVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLL
VALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLF
DYLPLTALVDGQIFCLHGGLSPSIDSLDHIRALDRLQEVPHEGPMCDLLW
SDPDDRGGWGISPRGAGYTFGQDISETFNNTNGLTLVSRAHQLVMEGYNW
CHDRNVVTIFSAPNYCYRCGNQAALMELDDSLKFSFLQFDPAPRRGEPHV
TRRTPDYFL*
BS08023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mts-PC | 309 | CG7109-PC | 1..309 | 1..309 | 1684 | 100 | Plus |
mts-PB | 309 | CG7109-PB | 1..309 | 1..309 | 1684 | 100 | Plus |
mts-PA | 309 | CG7109-PA | 1..309 | 1..309 | 1684 | 100 | Plus |
Pp4-19C-PH | 307 | CG32505-PH | 6..307 | 9..309 | 1091 | 64.4 | Plus |
Pp4-19C-PG | 307 | CG32505-PG | 6..307 | 9..309 | 1091 | 64.4 | Plus |