Clone Sequence Records
BS08025.3prime Sequence
886 bp (836 high quality bases) assembled on 2006-01-06
> BS08025.3prime
ATGGTCTAGAAAGCTTTTATTGCTCAATAAAATCGTTGTAATAGTTCAAG
AAAACCTCGCGATGCTCGCTAGCCAGATAATCCACCTTACCTTTCATCTC
TAGCAGTTCCTTTCTATCGGTGCGGCATTTCTTCTGGGCTATGATATCCC
ACAAATAGGTCATGCGAGCAATGTATTCCGTTGAGTTATCGCCACACTGC
GCAGCAATGCCTTCCAGCTGTTTGCGGATAATCCTCGCCAGATCTTCATA
CTCAAACTCATCCAATGAAGTGCCTCCATCTATCTCATAAAAACAGGCTG
TTACCAGTTCCTCGGCCATAATTCTTTTTAAGCTGTGGTGATCCACAAGC
CACTTGTCTAGATCATCGAATGCCTTGAACAGCGCCTGCCTTTTTGACGA
ATCGGCACTGCTGCCGATGAGTCCAAGGAACTCATTGTACCAGGCGAAAT
GTTGAAGCTCGTGGCACACCGTGCAAGTAATCGGTTTCTCTGCATTGCAT
CTCAGCCACCAGCGAAGATTATTCTGCTGAACTTTGGCGTCTGGCAGAAA
TTCTTGTCGGCAGTTGGGCTTTTCGCAGCGATAACGATGAAAAGAAAGAT
AGTTCTGGTCGGGATCAGTTCGTGTGCACTTAGCGCATGTGCACTCAAAT
TTGTAGATGGCCTTGAGCGGATGAGATCGTTGTAGCTTTAAACTGTTTCT
GTAATCCATTGTATAGCAATTGAAGATCTCTTCGCCTTCTAGAATGTCCT
TTGCAGCGTAGTTCACCACGGAACATCCATCGAACTTGGTGCGAATTGAG
GGTTCGCAGGCGTGGTTGCACAAGCTCAAGTAGGGCAGATTGATAGCCGT
GATAGGATCCGAGTGGGATAGATTGTGCAGCTGGCC
BS08025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-PB | 2256 | CG1868-RB | 1387..2256 | 886..17 | 4350 | 100 | Minus |
| CG1868-PA | 2157 | CG1868-RA | 1288..2157 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2358 | CG1868-RC | 1436..2305 | 886..17 | 4350 | 100 | Minus |
| CG1868-RB | 2399 | CG1868-RB | 1477..2346 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9582128..9582450 | 276..598 | 1615 | 100 | Plus |
| 2R | 25286936 | 2R | 9582505..9582792 | 599..886 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 9581814..9582074 | 17..277 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 11:40:42 has no hits.
BS08025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:07 Download gff for
BS08025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PA | 1288..2157 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:32 Download gff for
BS08025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PA | 1288..2157 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:25 Download gff for
BS08025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 1477..2346 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:18 Download gff for
BS08025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 1477..2346 | 17..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:18 Download gff for
BS08025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9581814..9582073 | 17..276 | 100 | <- | Plus |
| 2R | 9582129..9582450 | 277..598 | 100 | <- | Plus |
| 2R | 9582505..9582792 | 599..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:25 Download gff for
BS08025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5469319..5469578 | 17..276 | 100 | <- | Plus |
| arm_2R | 5469634..5469955 | 277..598 | 100 | <- | Plus |
| arm_2R | 5470010..5470297 | 599..886 | 100 | | Plus |
BS08025.5prime Sequence
905 bp (787 high quality bases) assembled on 2006-01-06
> BS08025.5prime
GAAGTTATCAGTCGACATGCCAGCGGACATTCTGCAGATATTCCAGAAGC
TGGCGCTCGACTTGCTGCAGGATTTGGAGCAACCGGTTGACAGGAAAGGA
TGCGCAGAACGTTCGAAAAATCTGCGCGAGGAGGGAAACCTTATGTTCAA
AGAGTCCGCATCGGGATCCTCCAAGGACTCGGTTCTGAAAGCATGCAGGC
TTTACTCGGAAGCCGTTTTCGAGGCTGAGAATGCTGTGGAAGAGCTGTCG
CTGGCGTTTGCCAACCGAGGAATAGCTTTGCAGGAGTACGGGTACTACAG
AGAAGCCTATGACGACTGCTCCAATGCGCTGGAGTGCGGATACCCGGAAA
GGCTGCGGCACAAGGTGATCATGCGGCAGGCCTTCTGCGCCTGGAAGCTG
AAGAAGATTGCTTCGCTAGAGGAGCATTTGGATTATCTCGGGCAGCTGCA
GCTTAAAGAGAGCTTTGAGCAGCAGCTGGAAGACCTGAAGCAGAAACTGG
AGCTGCTAAAGAACCAACCCAGAGAGCAGGAAACACAAGGGAAAGTGGTG
GATAAATCTCTAGGGGAAATCCTTACAGATCCTGGTCCCCGTGGTCGATA
TATGGTGGCTAAGGAAGCGATTAGCAAAGGCAACGTAATCTTTTCAGAGC
GCGCCTCCTGCTTTGTTCCATTGGAGCAACTGCTTATTTGCCAGCAGTGC
GCCGCCACCTTAATGAGCGCACCCATACCCTGCCCCAATTGCCATCAGCG
GGTAGTCTACTGCTCTAGGAAGTGTCGGGAGGCGCACTCGGCCATCCACA
AATTCGAGTGTGCCGCCTACAGAAAGGATATCCTCCGACTTTTGGGCATT
TCGCATTTGGCCTTGCGATTGCTTTTGACTTACATTCCCTACATAAGGCC
TCATT
BS08025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-PB | 2256 | CG1868-RB | 99..988 | 16..905 | 4450 | 100 | Plus |
| CG1868-PA | 2157 | CG1868-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2358 | CG1868-RC | 148..1037 | 16..905 | 4450 | 100 | Plus |
| CG1868-RB | 2399 | CG1868-RB | 189..1078 | 16..905 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9583581..9584135 | 570..16 | 2775 | 100 | Minus |
| 2R | 25286936 | 2R | 9583191..9583525 | 905..571 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:23:16 has no hits.
BS08025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:08 Download gff for
BS08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PB | 91..988 | 5..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:33 Download gff for
BS08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PB | 91..988 | 5..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:58 Download gff for
BS08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 181..1078 | 5..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:21 Download gff for
BS08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 181..1078 | 5..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:21 Download gff for
BS08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9583191..9583525 | 571..905 | 100 | <- | Minus |
| 2R | 9583581..9584143 | 5..570 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:58 Download gff for
BS08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5470696..5471030 | 571..905 | 100 | <- | Minus |
| arm_2R | 5471086..5471648 | 5..570 | 99 | | Minus |
BS08025.complete Sequence
2189 bp assembled on 2008-01-03
GenBank Submission: FJ636064
> BS08025.complete
GAAGTTATCAGTCGACATGCCAGCGGACATTCTGCAGATATTCCAGAAGC
TGGCGCTCGACTTGCTGCAGGATTTGGAGCAACCGGTTGACAGGAAAGGA
TGCGCAGAACGTTCGAAAAATCTGCGCGAGGAGGGAAACCTTATGTTCAA
AGAGTCCGCATCGGGATCCTCCAAGGACTCGGTTCTGAAAGCATGCAGGC
TTTACTCGGAAGCCGTTTTCGAGGCTGAGAATGCTGTGGAAGAGCTGTCG
CTGGCGTTTGCCAACCGAGGAATAGCTTTGCAGGAGTACGGGTACTACAG
AGAAGCCTATGACGACTGCTCCAATGCGCTGGAGTGCGGATACCCGGAAA
GGCTGCGGCACAAGGTGATCATGCGGCAGGCCTTCTGCGCCTGGAAGCTG
AAGAAGATTGCTTCGCTAGAGGAGCATTTGGATTATCTCGGGCAGCTGCA
GCTTAAAGAGAGCTTTGAGCAGCAGCTGGAAGACCTGAAGCAGAAACTGG
AGCTGCTAAAGAACCAACCCAGAGAGCAGGAAACACAAGGGAAAGTGGTG
GATAAATCTCTAGGGGAAATCCTTACAGATCCTGGTCCCCGTGGTCGATA
TATGGTGGCTAAGGAAGCGATTAGCAAAGGCAACGTAATCTTTTCAGAGC
GCGCCTCCTGCTTTGTTCCATTGGAGCAACTGCTTATTTGCCAGCAGTGC
GCCGCCACCTTAATGAGCGCACCCATACCCTGCCCCAATTGCCATCAGCG
GGTAGTCTACTGCTCTAGGAAGTGTCGGGAGGCGCACTCGGCCATCCACA
AATTCGAGTGTGCCGCCTACAGAAAGGATATCCTCCGACTTTTGGGCATT
TCGCATTTGGCCTTGCGATTGCTTTTGACTTACATTCCCTACATAAGGCC
TCATTTGCAAGAGATGACCAGTGCAAAGGGTATGTGGGAAGAAATAATGA
ATCTGTCCCGAAAACCGGAAGAGAGTGAAAACGCTCCAGAGTATTTGCGA
AGCCTGCGCATGGTCAGTCAACTGGATCAGGCTATCGATGAGGAGTTAAA
TTACCACATCCTCTGTGCCAATCTCCTTCAACTTTACCTGAAAGAGCACA
CCGATTTCTACGATCAGTTCCACTCATTGCCAGCCAGCATTGAAGATTGG
CAACTGATTATATCAGCACTGATTCTGCGCTTCGCCGGCCAGTTGCTGGC
GAATGGGCATGTAGGCGATGCGTTGCTCGGAGTTGGCATGGAGCCAAAAG
AGTTTGTCATGCTGCAGCCGGAGTTGTGGCAAAAGCCTCGACACCTGAAA
CGCGGCCAGCTGCACAATCTATCCCACTCGGATCCTATCACGGCTATCAA
TCTGCCCTACTTGAGCTTGTGCAACCACGCCTGCGAACCCTCAATTCGCA
CCAAGTTCGATGGATGTTCCGTGGTGAACTACGCTGCAAAGGACATTCTA
GAAGGCGAAGAGATCTTCAATTGCTATACAATGGATTACAGAAACAGTTT
AAAGCTACAACGATCTCATCCGCTCAAGGCCATCTACAAATTTGAGTGCA
CATGCGCTAAGTGCACACGAACTGATCCCGACCAGAACTATCTTTCTTTT
CATCGTTATCGCTGCGAAAAGCCCAACTGCCGACAAGAATTTCTGCCAGA
CGCCAAAGTTCAGCAGAATAATCTTCGCTGGTGGCTGAGATGCAATGCAG
AGAAACCGATTACTTGCACGGTGTGCCACGAGCTTCAACATTTCGCCTGG
TACAATGAGTTCCTTGGACTCATCGGCAGCAGTGCCGATTCGTCAAAAAG
GCAGGCGCTGTTCAAGGCATTCGATGATCTAGACAAGTGGCTTGTGGATC
ACCACAGCTTAAAAAGAATTATGGCCGAGGAACTGGTAACAGCCTGTTTT
TATGAGATAGATGGAGGCACTTCATTGGATGAGTTTGAGTATGAAGATCT
GGCGAGGATTATCCGCAAACAGCTGGAAGGCATTGCTGCGCAGTGTGGCG
ATAACTCAACGGAATACATTGCTCGCATGACCTATTTGTGGGATATCATA
GCCCAGAAGAAATGCCGCACCGATAGAAAGGAACTGCTAGAGATGAAAGG
TAAGGTGGATTATCTGGCTAGCGAGCATCGCGAGGTTTTCTTGAACTATT
ACAACGATTTTATTGAGCAATAAAAGCTTTCTAGACCAT
BS08025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2256 | CG1868-PC | 99..2256 | 16..2173 | 10790 | 100 | Plus |
| CG1868-RB | 2256 | CG1868-PB | 99..2256 | 16..2173 | 10790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2358 | CG1868-RC | 148..2305 | 16..2173 | 10790 | 100 | Plus |
| CG1868-RB | 2399 | CG1868-RB | 189..2346 | 16..2173 | 10790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9582505..9583525 | 1591..571 | 5105 | 100 | Minus |
| 2R | 25286936 | 2R | 9583581..9584135 | 570..16 | 2775 | 100 | Minus |
| 2R | 25286936 | 2R | 9582128..9582450 | 1914..1592 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 9581814..9582074 | 2173..1913 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:52:47 has no hits.
BS08025.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:46 Download gff for
BS08025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 91..2256 | 5..2173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:13 Download gff for
BS08025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RA | 96..2250 | 17..2171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:10 Download gff for
BS08025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 190..2344 | 17..2171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:46 Download gff for
BS08025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RA | 87..2252 | 5..2173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:17 Download gff for
BS08025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 190..2344 | 17..2171 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:17 Download gff for
BS08025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9581816..9582073 | 1914..2171 | 100 | <- | Minus |
| 2R | 9582129..9582450 | 1592..1913 | 100 | <- | Minus |
| 2R | 9582505..9583525 | 571..1591 | 100 | <- | Minus |
| 2R | 9583581..9584134 | 17..570 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:10 Download gff for
BS08025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5469321..5469578 | 1914..2171 | 100 | <- | Minus |
| arm_2R | 5469634..5469955 | 1592..1913 | 100 | <- | Minus |
| arm_2R | 5470010..5471030 | 571..1591 | 100 | <- | Minus |
| arm_2R | 5471086..5471639 | 17..570 | 100 | | Minus |
BS08025.pep Sequence
Translation from 16 to 2172
> BS08025.pep
MPADILQIFQKLALDLLQDLEQPVDRKGCAERSKNLREEGNLMFKESASG
SSKDSVLKACRLYSEAVFEAENAVEELSLAFANRGIALQEYGYYREAYDD
CSNALECGYPERLRHKVIMRQAFCAWKLKKIASLEEHLDYLGQLQLKESF
EQQLEDLKQKLELLKNQPREQETQGKVVDKSLGEILTDPGPRGRYMVAKE
AISKGNVIFSERASCFVPLEQLLICQQCAATLMSAPIPCPNCHQRVVYCS
RKCREAHSAIHKFECAAYRKDILRLLGISHLALRLLLTYIPYIRPHLQEM
TSAKGMWEEIMNLSRKPEESENAPEYLRSLRMVSQLDQAIDEELNYHILC
ANLLQLYLKEHTDFYDQFHSLPASIEDWQLIISALILRFAGQLLANGHVG
DALLGVGMEPKEFVMLQPELWQKPRHLKRGQLHNLSHSDPITAINLPYLS
LCNHACEPSIRTKFDGCSVVNYAAKDILEGEEIFNCYTMDYRNSLKLQRS
HPLKAIYKFECTCAKCTRTDPDQNYLSFHRYRCEKPNCRQEFLPDAKVQQ
NNLRWWLRCNAEKPITCTVCHELQHFAWYNEFLGLIGSSADSSKRQALFK
AFDDLDKWLVDHHSLKRIMAEELVTACFYEIDGGTSLDEFEYEDLARIIR
KQLEGIAAQCGDNSTEYIARMTYLWDIIAQKKCRTDRKELLEMKGKVDYL
ASEHREVFLNYYNDFIEQ*
BS08025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-PC | 751 | CG1868-PC | 34..751 | 1..718 | 3808 | 100 | Plus |
| CG1868-PB | 751 | CG1868-PB | 34..751 | 1..718 | 3808 | 100 | Plus |
| dao-PB | 882 | CG15267-PB | 142..865 | 9..716 | 868 | 31.3 | Plus |
| dao-PA | 882 | CG15267-PA | 142..865 | 9..716 | 868 | 31.3 | Plus |
| dao-PC | 808 | CG15267-PC | 142..775 | 9..627 | 699 | 31 | Plus |
