Clone Sequence Records
BS08028.3prime Sequence
935 bp (810 high quality bases) assembled on 2006-01-06
> BS08028.3prime
ATGGTCTAGAAAGCTTTTAAGTGTATTTCCGCTCCGCCTTTTCCTCAGTT
AAGGTTGGTGGCGTGTTTTCCTGGGTCCGAACCAAATGCGATGGCAATTG
CATGTTGAGCGGGTCGTTGATCCTTCTGAGATTGTACTCCAACTCCGCCG
ACTTTCGCTTCAGTTCGTTGTAGTGTTCTACATCGAACTGAACCTTTTTG
GCGTTCCTATAAAGGGAAAGTGAGAATTCGCGATTCTTCACATCCTCCAT
CATATATTCCCTCTTAGTGACACAATAGTAGGCATACATTGCCATTGTCG
TCCCGTAAGTAACAAAATATGTAACGGGTTCCATAATATCCCAAGAGTAT
TCCCACCAAGTCAGTCGTGCCAAAATGCCAAATTGCACCGACATTAGGCC
CAAACCCATCCAAGTCATAAAGTTAGTGCGACGAGCGGCCTTTTTGCTGA
GTTCCAGTTTTTTCTCTTCCAGTGGTTCTAGTTCATAGCGTAGGGTCTCC
AGTTCTTTGGCCAATTGATTGCTCTTCTCCAGCTGATATTCTCCGACGTT
GAATGCCTCGTAGAGCTGAGCAATAACCTTACGAACATCGCCCACTTTGT
CCATGGACTCCAATGTGACTTTGTCACGTTTGGGAGGATTCACATCCAAT
GTGCGATTGTTGATTTGTATGCTAAACGAGTCATCCAGCAAGCTTTCGAT
GGTGCAGGACGACGCGATTCGCACACCATGCTTGTTGATCACCGCAGCTC
GATCGATGCCCCGATCCTCAGCCCTGAGCATGGCTAACAGATCACCAACG
TTGTGGGAGATGGGTTTCAGGGCAAACTGGCAGAGTTCATTGCGACTGGG
AAGTCGTACAGTCATGTGTGGCATGCCATTCACGTATTCCACATAGATGT
CTTCTCCCGTCGTCGGTTTTTTATGCTTGTCCGTT
BS08028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-PA | 1101 | CG18769-RA | 183..1101 | 935..17 | 4595 | 100 | Minus |
CG18769-PC | 1101 | CG18769-RC | 183..1101 | 935..17 | 4595 | 100 | Minus |
CG18769-PB | 1101 | CG18769-RB | 183..1101 | 935..17 | 4595 | 100 | Minus |
CG18769-PD | 1101 | CG18769-RD | 183..1101 | 935..17 | 4595 | 100 | Minus |
CG18769-PF | 858 | CG18769-RF | 1..858 | 874..17 | 4290 | 100 | Minus |
CG18769-PE | 858 | CG18769-RE | 1..858 | 874..17 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RE | 1543 | CG18769-RE | 197..1115 | 935..17 | 4595 | 100 | Minus |
CG18769-RD | 1811 | CG18769-RD | 465..1383 | 935..17 | 4595 | 100 | Minus |
CG18769-RB | 2623 | CG18769-RB | 1277..2195 | 935..17 | 4595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6591478..6591721 | 260..17 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 6590602..6590835 | 905..672 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 6591212..6591418 | 465..259 | 1035 | 100 | Minus |
3L | 28110227 | 3L | 6590891..6590999 | 674..566 | 545 | 100 | Minus |
3L | 28110227 | 3L | 6591055..6591160 | 569..464 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:00:28 has no hits.
BS08028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:14 Download gff for
BS08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PB | 183..1101 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:40 Download gff for
BS08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PD | 183..1101 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:47 Download gff for
BS08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1277..2201 | 11..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:50 Download gff for
BS08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1277..2201 | 11..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:50 Download gff for
BS08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6590604..6590835 | 672..903 | 100 | -> | Minus |
3L | 6590894..6590999 | 566..671 | 100 | -> | Minus |
3L | 6591059..6591160 | 464..565 | 100 | -> | Minus |
3L | 6591214..6591417 | 260..463 | 100 | -> | Minus |
3L | 6591479..6591727 | 11..259 | 98 | | Minus |
3L | 6562387..6562418 | 904..935 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:47 Download gff for
BS08028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6555487..6555518 | 904..935 | 100 | -> | Minus |
arm_3L | 6583704..6583935 | 672..903 | 100 | -> | Minus |
arm_3L | 6583994..6584099 | 566..671 | 100 | -> | Minus |
arm_3L | 6584159..6584260 | 464..565 | 100 | -> | Minus |
arm_3L | 6584314..6584517 | 260..463 | 100 | -> | Minus |
arm_3L | 6584579..6584827 | 11..259 | 98 | | Minus |
BS08028.5prime Sequence
888 bp (831 high quality bases) assembled on 2006-01-06
> BS08028.5prime
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGAACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGAATATATGATGGA
BS08028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-PA | 1101 | CG18769-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG18769-PC | 1101 | CG18769-RC | 1..872 | 17..888 | 4360 | 100 | Plus |
CG18769-PB | 1101 | CG18769-RB | 1..872 | 17..888 | 4360 | 100 | Plus |
CG18769-PD | 1101 | CG18769-RD | 1..872 | 17..888 | 4360 | 100 | Plus |
CG18769-PF | 858 | CG18769-RF | 1..629 | 260..888 | 3145 | 100 | Plus |
CG18769-PE | 858 | CG18769-RE | 1..629 | 260..888 | 3145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RD | 1811 | CG18769-RD | 282..1154 | 16..888 | 4365 | 100 | Plus |
CG18769-RB | 2623 | CG18769-RB | 1094..1966 | 16..888 | 4365 | 100 | Plus |
CG18769-RC | 1778 | CG18769-RC | 249..1121 | 16..888 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6590602..6590835 | 229..462 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 6591212..6591418 | 669..875 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 6551832..6551949 | 16..133 | 590 | 100 | Plus |
3L | 28110227 | 3L | 6590891..6590999 | 460..568 | 545 | 100 | Plus |
3L | 28110227 | 3L | 6591055..6591160 | 565..670 | 530 | 100 | Plus |
3L | 28110227 | 3L | 6562321..6562418 | 133..230 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:10:46 has no hits.
BS08028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:15 Download gff for
BS08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PB | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:41 Download gff for
BS08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PD | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:29:38 Download gff for
BS08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 241..1120 | 10..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:40 Download gff for
BS08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 241..1120 | 10..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:40 Download gff for
BS08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6551824..6551949 | 10..133 | 97 | -> | Plus |
3L | 6562322..6562418 | 134..230 | 100 | -> | Plus |
3L | 6590604..6590835 | 231..462 | 100 | -> | Plus |
3L | 6590894..6590999 | 463..568 | 100 | -> | Plus |
3L | 6591059..6591160 | 569..670 | 100 | -> | Plus |
3L | 6591214..6591417 | 671..874 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:29:38 Download gff for
BS08028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6555422..6555518 | 134..230 | 100 | -> | Plus |
arm_3L | 6544924..6545049 | 10..133 | 97 | -> | Plus |
arm_3L | 6583704..6583935 | 231..462 | 100 | -> | Plus |
arm_3L | 6583994..6584099 | 463..568 | 100 | -> | Plus |
arm_3L | 6584159..6584260 | 569..670 | 100 | -> | Plus |
arm_3L | 6584314..6584517 | 671..874 | 100 | -> | Plus |
BS08028.complete Sequence
1133 bp (1133 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636065
> BS08028.complete
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGAACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGAATATATGATGGAGGATGTGAAGAA
TCGCGAATTCTCACTTTCCCTTTATAGGAACGCCAAAAAGGTTCAGTTCG
ATGTAGAACACTACAACGAACTGAAGCGAAAGTCGGCGGAGTTGGAGTAC
AATCTCAGAAGGATCAACGACCCGCTCAACATGCAATTGCCATCGCATTT
GGTTCGGACCCAGGAAAACACGCCACCAACCTTAACTGAGGAAAAGGCGG
AGCGGAAATACACTTAAAAGCTTTCTAGACCAT
BS08028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RD | 1101 | CG18769-PD | 1..1101 | 17..1117 | 5505 | 100 | Plus |
CG18769-RB | 1101 | CG18769-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
CG18769-RC | 1101 | CG18769-PC | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RD | 1811 | CG18769-RD | 282..1383 | 16..1117 | 5510 | 100 | Plus |
CG18769-RB | 2623 | CG18769-RB | 1094..2195 | 16..1117 | 5510 | 100 | Plus |
CG18769-RC | 1778 | CG18769-RC | 249..1350 | 16..1117 | 5510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6591478..6591721 | 874..1117 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 6590602..6590835 | 229..462 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 6591212..6591418 | 669..875 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 6551832..6551949 | 16..133 | 590 | 100 | Plus |
3L | 28110227 | 3L | 6590891..6590999 | 460..568 | 545 | 100 | Plus |
3L | 28110227 | 3L | 6591055..6591160 | 565..670 | 530 | 100 | Plus |
3L | 28110227 | 3L | 6562321..6562418 | 133..230 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:34:54 has no hits.
BS08028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:42 Download gff for
BS08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1..1101 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:20 Download gff for
BS08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1095..2193 | 17..1115 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:22 Download gff for
BS08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 250..1348 | 17..1115 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:43 Download gff for
BS08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1086..2201 | 10..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:11 Download gff for
BS08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 250..1348 | 17..1115 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:11 Download gff for
BS08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6591214..6591417 | 671..874 | 100 | -> | Plus |
3L | 6591479..6591719 | 875..1115 | 100 | | Plus |
3L | 6551833..6551949 | 17..133 | 100 | -> | Plus |
3L | 6562322..6562418 | 134..230 | 100 | -> | Plus |
3L | 6590604..6590835 | 231..462 | 100 | -> | Plus |
3L | 6590894..6590999 | 463..568 | 100 | -> | Plus |
3L | 6591059..6591160 | 569..670 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:22 Download gff for
BS08028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6583994..6584099 | 463..568 | 100 | -> | Plus |
arm_3L | 6584159..6584260 | 569..670 | 100 | -> | Plus |
arm_3L | 6584314..6584517 | 671..874 | 100 | -> | Plus |
arm_3L | 6584579..6584819 | 875..1115 | 100 | | Plus |
arm_3L | 6544933..6545049 | 17..133 | 100 | -> | Plus |
arm_3L | 6555422..6555518 | 134..230 | 100 | -> | Plus |
arm_3L | 6583704..6583935 | 231..462 | 100 | -> | Plus |
BS08028.pep Sequence
Translation from 16 to 1116
> BS08028.pep
MSRNRAAMVSAFRLFLRPATTTTHRSLALRLAPGTTFALHLRPCHELQQH
RSFASTAEDGETDKHKKPTTGEDIYVEYVNGMPHMTVRLPSRNELCQFAL
KPISHNVGDLLAMLRAEDRGIDRAAVINKHGVRIASSCTIESLLDDSFSI
QINNRTLDVNPPKRDKVTLESMDKVGDVRKVIAQLYEAFNVGEYQLEKSN
QLAKELETLRYELEPLEEKKLELSKKAARRTNFMTWMGLGLMSVQFGILA
RLTWWEYSWDIMEPVTYFVTYGTTMAMYAYYCVTKREYMMEDVKNREFSL
SLYRNAKKVQFDVEHYNELKRKSAELEYNLRRINDPLNMQLPSHLVRTQE
NTPPTLTEEKAERKYT*
BS08028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-PD | 366 | CG18769-PD | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PB | 366 | CG18769-PB | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PC | 366 | CG18769-PC | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PA | 366 | CG18769-PA | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PI | 365 | CG18769-PI | 1..365 | 1..366 | 1884 | 99.7 | Plus |