Clone BS08028 Report

Search the DGRC for BS08028

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG18769-RA
Protein status:BS08028.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08028.3prime Sequence

935 bp (810 high quality bases) assembled on 2006-01-06

> BS08028.3prime
ATGGTCTAGAAAGCTTTTAAGTGTATTTCCGCTCCGCCTTTTCCTCAGTT
AAGGTTGGTGGCGTGTTTTCCTGGGTCCGAACCAAATGCGATGGCAATTG
CATGTTGAGCGGGTCGTTGATCCTTCTGAGATTGTACTCCAACTCCGCCG
ACTTTCGCTTCAGTTCGTTGTAGTGTTCTACATCGAACTGAACCTTTTTG
GCGTTCCTATAAAGGGAAAGTGAGAATTCGCGATTCTTCACATCCTCCAT
CATATATTCCCTCTTAGTGACACAATAGTAGGCATACATTGCCATTGTCG
TCCCGTAAGTAACAAAATATGTAACGGGTTCCATAATATCCCAAGAGTAT
TCCCACCAAGTCAGTCGTGCCAAAATGCCAAATTGCACCGACATTAGGCC
CAAACCCATCCAAGTCATAAAGTTAGTGCGACGAGCGGCCTTTTTGCTGA
GTTCCAGTTTTTTCTCTTCCAGTGGTTCTAGTTCATAGCGTAGGGTCTCC
AGTTCTTTGGCCAATTGATTGCTCTTCTCCAGCTGATATTCTCCGACGTT
GAATGCCTCGTAGAGCTGAGCAATAACCTTACGAACATCGCCCACTTTGT
CCATGGACTCCAATGTGACTTTGTCACGTTTGGGAGGATTCACATCCAAT
GTGCGATTGTTGATTTGTATGCTAAACGAGTCATCCAGCAAGCTTTCGAT
GGTGCAGGACGACGCGATTCGCACACCATGCTTGTTGATCACCGCAGCTC
GATCGATGCCCCGATCCTCAGCCCTGAGCATGGCTAACAGATCACCAACG
TTGTGGGAGATGGGTTTCAGGGCAAACTGGCAGAGTTCATTGCGACTGGG
AAGTCGTACAGTCATGTGTGGCATGCCATTCACGTATTCCACATAGATGT
CTTCTCCCGTCGTCGGTTTTTTATGCTTGTCCGTT

BS08028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-PA 1101 CG18769-RA 183..1101 935..17 4595 100 Minus
CG18769-PC 1101 CG18769-RC 183..1101 935..17 4595 100 Minus
CG18769-PB 1101 CG18769-RB 183..1101 935..17 4595 100 Minus
CG18769-PD 1101 CG18769-RD 183..1101 935..17 4595 100 Minus
CG18769-PF 858 CG18769-RF 1..858 874..17 4290 100 Minus
CG18769-PE 858 CG18769-RE 1..858 874..17 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RE 1543 CG18769-RE 197..1115 935..17 4595 100 Minus
CG18769-RD 1811 CG18769-RD 465..1383 935..17 4595 100 Minus
CG18769-RB 2623 CG18769-RB 1277..2195 935..17 4595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6591478..6591721 260..17 1220 100 Minus
3L 28110227 3L 6590602..6590835 905..672 1170 100 Minus
3L 28110227 3L 6591212..6591418 465..259 1035 100 Minus
3L 28110227 3L 6590891..6590999 674..566 545 100 Minus
3L 28110227 3L 6591055..6591160 569..464 530 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:00:28 has no hits.

BS08028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:14 Download gff for BS08028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PB 183..1101 17..935 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:40 Download gff for BS08028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PD 183..1101 17..935 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:47 Download gff for BS08028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1277..2201 11..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:50 Download gff for BS08028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1277..2201 11..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:50 Download gff for BS08028.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6590604..6590835 672..903 100 -> Minus
3L 6590894..6590999 566..671 100 -> Minus
3L 6591059..6591160 464..565 100 -> Minus
3L 6591214..6591417 260..463 100 -> Minus
3L 6591479..6591727 11..259 98   Minus
3L 6562387..6562418 904..935 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:47 Download gff for BS08028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6555487..6555518 904..935 100 -> Minus
arm_3L 6583704..6583935 672..903 100 -> Minus
arm_3L 6583994..6584099 566..671 100 -> Minus
arm_3L 6584159..6584260 464..565 100 -> Minus
arm_3L 6584314..6584517 260..463 100 -> Minus
arm_3L 6584579..6584827 11..259 98   Minus

BS08028.5prime Sequence

888 bp (831 high quality bases) assembled on 2006-01-06

> BS08028.5prime
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGAACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGAATATATGATGGA

BS08028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-PA 1101 CG18769-RA 1..872 17..888 4360 100 Plus
CG18769-PC 1101 CG18769-RC 1..872 17..888 4360 100 Plus
CG18769-PB 1101 CG18769-RB 1..872 17..888 4360 100 Plus
CG18769-PD 1101 CG18769-RD 1..872 17..888 4360 100 Plus
CG18769-PF 858 CG18769-RF 1..629 260..888 3145 100 Plus
CG18769-PE 858 CG18769-RE 1..629 260..888 3145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RD 1811 CG18769-RD 282..1154 16..888 4365 100 Plus
CG18769-RB 2623 CG18769-RB 1094..1966 16..888 4365 100 Plus
CG18769-RC 1778 CG18769-RC 249..1121 16..888 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6590602..6590835 229..462 1170 100 Plus
3L 28110227 3L 6591212..6591418 669..875 1035 100 Plus
3L 28110227 3L 6551832..6551949 16..133 590 100 Plus
3L 28110227 3L 6590891..6590999 460..568 545 100 Plus
3L 28110227 3L 6591055..6591160 565..670 530 100 Plus
3L 28110227 3L 6562321..6562418 133..230 490 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:10:46 has no hits.

BS08028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:15 Download gff for BS08028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PB 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:41 Download gff for BS08028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PD 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:29:38 Download gff for BS08028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 241..1120 10..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:40 Download gff for BS08028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 241..1120 10..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:40 Download gff for BS08028.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6551824..6551949 10..133 97 -> Plus
3L 6562322..6562418 134..230 100 -> Plus
3L 6590604..6590835 231..462 100 -> Plus
3L 6590894..6590999 463..568 100 -> Plus
3L 6591059..6591160 569..670 100 -> Plus
3L 6591214..6591417 671..874 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:29:38 Download gff for BS08028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6555422..6555518 134..230 100 -> Plus
arm_3L 6544924..6545049 10..133 97 -> Plus
arm_3L 6583704..6583935 231..462 100 -> Plus
arm_3L 6583994..6584099 463..568 100 -> Plus
arm_3L 6584159..6584260 569..670 100 -> Plus
arm_3L 6584314..6584517 671..874 100 -> Plus

BS08028.complete Sequence

1133 bp (1133 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636065

> BS08028.complete
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGAACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGAATATATGATGGAGGATGTGAAGAA
TCGCGAATTCTCACTTTCCCTTTATAGGAACGCCAAAAAGGTTCAGTTCG
ATGTAGAACACTACAACGAACTGAAGCGAAAGTCGGCGGAGTTGGAGTAC
AATCTCAGAAGGATCAACGACCCGCTCAACATGCAATTGCCATCGCATTT
GGTTCGGACCCAGGAAAACACGCCACCAACCTTAACTGAGGAAAAGGCGG
AGCGGAAATACACTTAAAAGCTTTCTAGACCAT

BS08028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RD 1101 CG18769-PD 1..1101 17..1117 5505 100 Plus
CG18769-RB 1101 CG18769-PB 1..1101 17..1117 5505 100 Plus
CG18769-RC 1101 CG18769-PC 1..1101 17..1117 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RD 1811 CG18769-RD 282..1383 16..1117 5510 100 Plus
CG18769-RB 2623 CG18769-RB 1094..2195 16..1117 5510 100 Plus
CG18769-RC 1778 CG18769-RC 249..1350 16..1117 5510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6591478..6591721 874..1117 1220 100 Plus
3L 28110227 3L 6590602..6590835 229..462 1170 100 Plus
3L 28110227 3L 6591212..6591418 669..875 1035 100 Plus
3L 28110227 3L 6551832..6551949 16..133 590 100 Plus
3L 28110227 3L 6590891..6590999 460..568 545 100 Plus
3L 28110227 3L 6591055..6591160 565..670 530 100 Plus
3L 28110227 3L 6562321..6562418 133..230 490 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:34:54 has no hits.

BS08028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:42 Download gff for BS08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1..1101 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:20 Download gff for BS08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1095..2193 17..1115 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:22 Download gff for BS08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 250..1348 17..1115 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:43 Download gff for BS08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1086..2201 10..1123 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:11 Download gff for BS08028.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 250..1348 17..1115 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:11 Download gff for BS08028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6591214..6591417 671..874 100 -> Plus
3L 6591479..6591719 875..1115 100   Plus
3L 6551833..6551949 17..133 100 -> Plus
3L 6562322..6562418 134..230 100 -> Plus
3L 6590604..6590835 231..462 100 -> Plus
3L 6590894..6590999 463..568 100 -> Plus
3L 6591059..6591160 569..670 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:22 Download gff for BS08028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6583994..6584099 463..568 100 -> Plus
arm_3L 6584159..6584260 569..670 100 -> Plus
arm_3L 6584314..6584517 671..874 100 -> Plus
arm_3L 6584579..6584819 875..1115 100   Plus
arm_3L 6544933..6545049 17..133 100 -> Plus
arm_3L 6555422..6555518 134..230 100 -> Plus
arm_3L 6583704..6583935 231..462 100 -> Plus

BS08028.pep Sequence

Translation from 16 to 1116

> BS08028.pep
MSRNRAAMVSAFRLFLRPATTTTHRSLALRLAPGTTFALHLRPCHELQQH
RSFASTAEDGETDKHKKPTTGEDIYVEYVNGMPHMTVRLPSRNELCQFAL
KPISHNVGDLLAMLRAEDRGIDRAAVINKHGVRIASSCTIESLLDDSFSI
QINNRTLDVNPPKRDKVTLESMDKVGDVRKVIAQLYEAFNVGEYQLEKSN
QLAKELETLRYELEPLEEKKLELSKKAARRTNFMTWMGLGLMSVQFGILA
RLTWWEYSWDIMEPVTYFVTYGTTMAMYAYYCVTKREYMMEDVKNREFSL
SLYRNAKKVQFDVEHYNELKRKSAELEYNLRRINDPLNMQLPSHLVRTQE
NTPPTLTEEKAERKYT*

BS08028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-PD 366 CG18769-PD 1..366 1..366 1901 100 Plus
CG18769-PB 366 CG18769-PB 1..366 1..366 1901 100 Plus
CG18769-PC 366 CG18769-PC 1..366 1..366 1901 100 Plus
CG18769-PA 366 CG18769-PA 1..366 1..366 1901 100 Plus
CG18769-PI 365 CG18769-PI 1..365 1..366 1884 99.7 Plus